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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    712801 9b5u:A (3.67) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712802 9b5v:A (3.94) BS01 MG 6.2.1.45 GO:0000287 ... O94609 39143218
    712803 9b5v:A (3.94) BS02 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712804 9b5v:C (3.94) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712805 9b5w:A (3.96) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712806 9b5w:A (3.96) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712807 9b5w:C (3.96) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712808 9b5x:A (4.16) BS01 MG 6.2.1.45 GO:0000287 ... O94609 39143218
    712809 9b5x:A (4.16) BS02 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712810 9b5x:A (4.16) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712811 9b5x:C (4.16) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712812 9b70:A (2.88) BS01 A1AI1 N/A GO:0005886 ... O66465 38877016
    712813 9b70:B (2.88) BS01 A1AI1 N/A GO:0005886 ... O66465 38877016
    712814 9b71:A (2.7) BS01 A1AI2 N/A GO:0005886 ... O66465 38877016
    712815 9b71:B (2.7) BS01 A1AI2 N/A GO:0005886 ... O66465 38877016
    712816 9b8o:H (3.2) BS01 peptide N/A GO:0005654 ... Q6P503 38900912
    712817 9b8o:a (3.2) BS01 MAN N/A GO:0000220 ... P25286 38900912
    712818 9b8o:a (3.2) BS02 GLC N/A GO:0000220 ... P25286 38900912
    712819 9b8o:a (3.2) BS03 WJP N/A GO:0000220 ... P25286 38900912
    712820 9b8o:a (3.2) BS04 LP3 N/A GO:0000220 ... P25286 38900912
    712821 9b8o:h (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    712822 9b8o:i (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    712823 9b8o:i (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    712824 9b8o:i (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    712825 9b8o:j (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    712826 9b8o:j (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    712827 9b8o:j (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    712828 9b8o:j (3.2) BS04 CLR N/A GO:0000220 ... P63081 38900912
    712829 9b8o:k (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    712830 9b8o:k (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    712831 9b8o:k (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    712832 9b8o:l (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    712833 9b8o:l (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    712834 9b8o:l (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    712835 9b8o:m (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    712836 9b8o:m (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    712837 9b8o:m (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    712838 9b8o:n (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    712839 9b8o:n (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    712840 9b8o:n (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    712841 9b8o:n (3.2) BS04 CLR N/A GO:0000220 ... P63081 38900912
    712842 9b8o:n (3.2) BS05 CLR N/A GO:0000220 ... P63081 38900912
    712843 9b8o:o (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    712844 9b8o:o (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    712845 9b8o:o (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    712846 9b8p:A (3.2) BS01 ADP N/A GO:0000221 ... D4A133 38900912
    712847 9b8p:D (3.2) BS01 ADP N/A GO:0000221 ... P62815 38900912
    712848 9b8w:A (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712849 9b8w:A (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    712850 9b8w:B (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712851 9b8w:B (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    712852 9b8w:C (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712853 9b8w:C (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    712854 9b8w:D (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712855 9b8w:D (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    712856 9b8x:A (3.0) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712857 9b8x:A (3.0) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    712858 9b8y:A (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712859 9b8y:A (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    712860 9b8y:A (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    712861 9b8y:B (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712862 9b8y:B (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    712863 9b8y:B (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    712864 9b8y:C (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712865 9b8y:C (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    712866 9b8y:C (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    712867 9b8y:D (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712868 9b8y:D (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    712869 9b8y:D (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    712870 9b8z:A (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712871 9b8z:A (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    712872 9b8z:A (3.4) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    712873 9b90:A (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712874 9b90:A (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    712875 9b90:A (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    712876 9b90:B (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712877 9b90:B (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    712878 9b90:B (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    712879 9b90:C (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712880 9b90:C (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    712881 9b90:C (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    712882 9b90:D (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712883 9b90:D (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    712884 9b90:D (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    712885 9b91:A (3.3) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712886 9b91:A (3.3) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    712887 9b91:A (3.3) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    712888 9b92:A (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712889 9b92:B (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712890 9b92:C (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712891 9b92:D (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712892 9b94:A (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712893 9b94:B (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712894 9b94:C (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712895 9b94:D (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    712896 9bap:A (2.88) BS01 SAH N/A GO:0003677 ... Q96W73 N/A
    712897 9bap:A (2.88) BS02 ZN N/A GO:0003677 ... Q96W73 N/A
    712898 9bbb:A (2.5) BS01 HEM N/A GO:0002933 ... P08684 N/A
    712899 9bbb:A (2.5) BS02 A1APA N/A GO:0002933 ... P08684 N/A
    712900 9bbe:A (2.0) BS01 A1AK9 ? GO:0000781 ... Q16531 N/A
    712901 9bbg:A (1.7) BS01 A1ALA ? GO:0000781 ... Q16531 N/A
    712902 9bbh:A (2.0) BS01 VVP ? GO:0000781 ... Q16531 N/A
    712903 9bbh:A (2.0) BS02 VVP ? GO:0000781 ... Q16531 N/A
    712904 9bbi:A (1.9) BS01 A1ALB ? GO:0000781 ... Q16531 N/A
    712905 9bc2:A (2.75) BS01 peptide N/A GO:0000785 ... P21980 38959038
    712906 9bc3:A (2.52) BS01 peptide N/A GO:0000785 ... P21980 38959038
    712907 9bc3:A (2.52) BS02 CA N/A GO:0000785 ... P21980 38959038
    712908 9bc3:A (2.52) BS03 CA N/A GO:0000785 ... P21980 38959038
    712909 9bc3:B (2.52) BS01 peptide N/A GO:0000785 ... P21980 38959038
    712910 9bc3:B (2.52) BS02 CA N/A GO:0000785 ... P21980 38959038
    712911 9bc3:B (2.52) BS03 CA N/A GO:0000785 ... P21980 38959038
    712912 9bc4:A (1.84) BS01 peptide N/A GO:0000785 ... P21980 38959038
    712913 9bc4:A (1.84) BS02 CA N/A GO:0000785 ... P21980 38959038
    712914 9bc4:A (1.84) BS03 CA N/A GO:0000785 ... P21980 38959038
    712915 9bcb:A (1.45) BS01 A1ALJ ? GO:0005501 ... P82980 N/A
    712916 9bct:A (2.5) BS01 dna N/A GO:0000287 ... Q5JE33 N/A
    712917 9bct:A (2.5) BS02 dna N/A GO:0000287 ... Q5JE33 N/A
    712918 9bct:A (2.5) BS03 rna N/A GO:0000287 ... Q5JE33 N/A
    712919 9bct:A (2.5) BS04 MG N/A GO:0000287 ... Q5JE33 N/A
    712920 9bct:A (2.5) BS05 ZN N/A GO:0000287 ... Q5JE33 N/A
    712921 9bct:A (2.5) BS06 ZN N/A GO:0000287 ... Q5JE33 N/A
    712922 9bct:C (2.5) BS01 dna N/A GO:0000428 ... Q5JE34 N/A
    712923 9bct:C (2.5) BS02 dna N/A GO:0000428 ... Q5JE34 N/A
    712924 9bct:E (2.5) BS01 rna N/A GO:0000428 ... Q5JIY4 N/A
    712925 9bct:I (2.5) BS01 ZN N/A GO:0000428 ... Q5JIY5 N/A
    712926 9bct:J (2.5) BS01 rna N/A GO:0003677 ... Q5JH24 N/A
    712927 9bct:J (2.5) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    712928 9bct:M (2.5) BS01 rna N/A GO:0003677 ... Q5JH24 N/A
    712929 9bct:M (2.5) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    712930 9bct:N (2.5) BS01 ZN N/A GO:0000428 ... Q5JJC9 N/A
    712931 9bct:P (2.5) BS01 ZN N/A GO:0000428 ... Q5JDM8 N/A
    712932 9bcu:A (2.2) BS01 dna N/A GO:0000287 ... Q5JE33 N/A
    712933 9bcu:A (2.2) BS02 dna N/A GO:0000287 ... Q5JE33 N/A
    712934 9bcu:A (2.2) BS03 rna N/A GO:0000287 ... Q5JE33 N/A
    712935 9bcu:A (2.2) BS04 MG N/A GO:0000287 ... Q5JE33 N/A
    712936 9bcu:A (2.2) BS05 ZN N/A GO:0000287 ... Q5JE33 N/A
    712937 9bcu:A (2.2) BS06 ZN N/A GO:0000287 ... Q5JE33 N/A
    712938 9bcu:C (2.2) BS01 dna N/A GO:0000428 ... Q5JE34 N/A
    712939 9bcu:E (2.2) BS01 rna N/A GO:0000428 ... Q5JIY4 N/A
    712940 9bcu:J (2.2) BS01 rna N/A GO:0003677 ... Q5JH24 N/A
    712941 9bcu:J (2.2) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    712942 9bcu:M (2.2) BS01 rna N/A GO:0003677 ... Q5JH24 N/A
    712943 9bcu:M (2.2) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    712944 9bcu:N (2.2) BS01 ZN N/A GO:0000428 ... Q5JJC9 N/A
    712945 9bcu:P (2.2) BS01 ZN N/A GO:0000428 ... Q5JDM8 N/A
    712946 9bcz:A (1.99) BS01 CA 3.1.4.11 GO:0004435 ... Q2VRL0 N/A
    712947 9bdl:AL02 (2.8) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    712948 9bdl:AL02 (2.8) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    712949 9bdl:AL03 (2.8) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    712950 9bdl:AL05 (2.8) BS01 rna N/A GO:0000027 ... P19949 38718836
    712951 9bdl:AL05 (2.8) BS02 rna N/A GO:0000027 ... P19949 38718836
    712952 9bdl:AL07 (2.8) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    712953 9bdl:AL07 (2.8) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    712954 9bdl:AL09 (2.8) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    712955 9bdl:AL10 (2.8) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    712956 9bdl:AL10 (2.8) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    712957 9bdl:AL10 (2.8) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    712958 9bdl:AL15 (2.8) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    712959 9bdl:AL15 (2.8) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    712960 9bdl:AL16 (2.8) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    712961 9bdl:AL18 (2.8) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    712962 9bdl:AL23 (2.8) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    712963 9bdl:AL26 (2.8) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    712964 9bdl:AL26 (2.8) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    712965 9bdl:AL27 (2.8) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    712966 9bdl:AL29 (2.8) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    712967 9bdl:AL33 (2.8) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    712968 9bdl:AL35 (2.8) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    712969 9bdl:AL35 (2.8) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    712970 9bdl:AL36 (2.8) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    712971 9bdl:AL38 (2.8) BS01 rna N/A GO:0003735 ... G1U001 38718836
    712972 9bdl:ARAC (2.8) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    712973 9bdl:AS03 (2.8) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    712974 9bdl:AS04 (2.8) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    712975 9bdl:AS05 (2.8) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    712976 9bdl:AS06 (2.8) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    712977 9bdl:AS07 (2.8) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    712978 9bdl:AS08 (2.8) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    712979 9bdl:AS08 (2.8) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    712980 9bdl:AS09 (2.8) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    712981 9bdl:AS16 (2.8) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    712982 9bdl:AS19 (2.8) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    712983 9bdl:AS23 (2.8) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    712984 9bdl:AS27 (2.8) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    712985 9bdl:AS28 (2.8) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    712986 9bdn:AL02 (3.1) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    712987 9bdn:AL02 (3.1) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    712988 9bdn:AL03 (3.1) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    712989 9bdn:AL05 (3.1) BS01 rna N/A GO:0000027 ... P19949 38718836
    712990 9bdn:AL05 (3.1) BS02 rna N/A GO:0000027 ... P19949 38718836
    712991 9bdn:AL07 (3.1) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    712992 9bdn:AL07 (3.1) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    712993 9bdn:AL09 (3.1) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    712994 9bdn:AL10 (3.1) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    712995 9bdn:AL10 (3.1) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    712996 9bdn:AL10 (3.1) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    712997 9bdn:AL12 (3.1) BS01 rna N/A GO:0003723 ... G1SMR7 38718836
    712998 9bdn:AL15 (3.1) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    712999 9bdn:AL15 (3.1) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    713000 9bdn:AL16 (3.1) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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