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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    35001 1q6r:A (1.76) BS02 LX1 4.1.1.85 GO:0000287 ... P39304 14567674
    35002 1q6r:B (1.76) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    35003 1q6r:B (1.76) BS02 LX1 4.1.1.85 GO:0000287 ... P39304 14567674
    35004 1q6s:A (2.2) BS01 214 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=12nM
    PDBbind: -logKd/Ki=7.92, IC50=12nM
    BindingDB: IC50=220nM
    35005 1q6s:A (2.2) BS02 214 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=12nM
    PDBbind: -logKd/Ki=7.92, IC50=12nM
    BindingDB: IC50=220nM
    35006 1q6s:B (2.2) BS01 214 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=12nM
    BindingDB: IC50=220nM
    35007 1q6s:B (2.2) BS02 214 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=12nM
    BindingDB: IC50=220nM
    35008 1q6t:A (2.3) BS01 600 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=5nM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: IC50=5340nM
    35009 1q6t:A (2.3) BS02 600 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=5nM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: IC50=5340nM
    35010 1q6t:B (2.3) BS01 600 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=5nM
    BindingDB: IC50=5340nM
    35011 1q6t:B (2.3) BS02 600 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=5nM
    BindingDB: IC50=5340nM
    35012 1q6y:A (1.99) BS01 COA 2.8.3.16 GO:0003824 ... P69902 14993676
    35013 1q6z:A (1.0) BS01 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    35014 1q6z:A (1.0) BS02 CA 4.1.1.7 GO:0000287 ... P20906 N/A
    35015 1q6z:A (1.0) BS03 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    35016 1q74:A (1.7) BS01 ZN 3.5.1.103 GO:0005886 ... P9WJN3 12958317
    35017 1q74:B (1.7) BS01 ZN 3.5.1.103 GO:0005886 ... P9WJN3 12958317
    35018 1q74:C (1.7) BS01 ZN 3.5.1.103 GO:0005886 ... P9WJN3 12958317
    35019 1q74:D (1.7) BS01 ZN 3.5.1.103 GO:0005886 ... P9WJN3 12958317
    35020 1q78:A (2.8) BS01 3AT 2.7.7.19 GO:0003723 ... P25500 15328606
    35021 1q79:A (2.15) BS01 MN 2.7.7.19 GO:0003723 ... P25500 15328606
    35022 1q79:A (2.15) BS02 MN 2.7.7.19 GO:0003723 ... P25500 15328606
    35023 1q79:A (2.15) BS03 3AT 2.7.7.19 GO:0003723 ... P25500 15328606
    35024 1q7a:A (1.6) BS01 SO4 3.1.1.4 GO:0004623 ... P59071 15544328
    35025 1q7a:A (1.6) BS02 OPB 3.1.1.4 GO:0004623 ... P59071 15544328 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=7.19, Kd=64nM
    35026 1q7b:A (2.05) BS01 CA 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    35027 1q7b:A (2.05) BS02 NAP 1.1.1.100 GO:0004316 ... P0AEK2 15016358 MOAD: Kd=3.5uM
    35028 1q7b:B (2.05) BS01 CA 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    35029 1q7b:B (2.05) BS02 CA 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    35030 1q7b:B (2.05) BS03 NAP 1.1.1.100 GO:0004316 ... P0AEK2 15016358 MOAD: Kd=3.5uM
    35031 1q7b:C (2.05) BS01 CA 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    35032 1q7b:C (2.05) BS02 NAP 1.1.1.100 GO:0004316 ... P0AEK2 15016358 MOAD: Kd=3.5uM
    35033 1q7b:D (2.05) BS01 CA 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    35034 1q7b:D (2.05) BS02 NAP 1.1.1.100 GO:0004316 ... P0AEK2 15016358 MOAD: Kd=3.5uM
    35035 1q7c:A (2.5) BS01 NDP 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    35036 1q7c:B (2.5) BS01 NDP 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    35037 1q7e:A (1.6) BS01 MET 2.8.3.16 GO:0003824 ... P69902 14993676
    35038 1q7e:A (1.6) BS02 MET 2.8.3.16 GO:0003824 ... P69902 14993676
    35039 1q7g:A (2.6) BS01 NHO 1.1.1.3 GO:0004412 ... P31116 14583265
    35040 1q7l:A (1.4) BS01 ZN 3.5.1.14 GO:0004046 ... Q03154 12933810
    35041 1q7l:A (1.4) BS02 ZN 3.5.1.14 GO:0004046 ... Q03154 12933810
    35042 1q7l:A (1.4) BS03 GLY 3.5.1.14 GO:0004046 ... Q03154 12933810
    35043 1q7l:C (1.4) BS01 ZN 3.5.1.14 GO:0004046 ... Q03154 12933810
    35044 1q7l:C (1.4) BS02 ZN 3.5.1.14 GO:0004046 ... Q03154 12933810
    35045 1q7l:C (1.4) BS03 GLY 3.5.1.14 GO:0004046 ... Q03154 12933810
    35046 1q7t:A (1.9) BS01 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    35047 1q7t:A (1.9) BS02 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    35048 1q7t:B (1.9) BS01 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    35049 1q7t:B (1.9) BS02 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    35050 1q7y:1 (3.2) BS01 rna ? GO:0003735 ... P60619 12185246
    35051 1q7y:2 (3.2) BS01 rna ? GO:0003723 ... P32410 12185246
    35052 1q7y:3 (3.2) BS01 rna ? GO:0003735 ... P22452 12185246
    35053 1q7y:4 (3.2) BS01 rna ? GO:0000049 ... P32411 12185246
    35054 1q7y:4 (3.2) BS02 MG ? GO:0000049 ... P32411 12185246
    35055 1q7y:C (3.2) BS01 rna ? GO:0002181 ... P20276 12185246
    35056 1q7y:C (3.2) BS02 MG ? GO:0002181 ... P20276 12185246
    35057 1q7y:D (3.2) BS01 rna ? GO:0003723 ... P20279 12185246
    35058 1q7y:E (3.2) BS01 rna ? GO:0003723 ... P12735 12185246
    35059 1q7y:F (3.2) BS01 rna ? GO:0000049 ... P14124 12185246
    35060 1q7y:F (3.2) BS02 rna ? GO:0000049 ... P14124 12185246
    35061 1q7y:G (3.2) BS01 rna ? GO:0002181 ... P14135 12185246
    35062 1q7y:H (3.2) BS01 rna ? GO:0001682 ... P12743 12185246
    35063 1q7y:J (3.2) BS01 rna ? GO:0000027 ... P60617 12185246
    35064 1q7y:K (3.2) BS01 rna ? GO:0003729 ... P29198 12185246
    35065 1q7y:L (3.2) BS01 rna ? GO:0003735 ... P22450 12185246
    35066 1q7y:M (3.2) BS01 rna ? GO:0003735 ... P12737 12185246
    35067 1q7y:N (3.2) BS01 rna ? GO:0002181 ... P60618 12185246
    35068 1q7y:O (3.2) BS01 rna ? GO:0000027 ... P14123 12185246
    35069 1q7y:O (3.2) BS02 rna ? GO:0000027 ... P14123 12185246
    35070 1q7y:P (3.2) BS01 rna ? GO:0003723 ... P12733 12185246
    35071 1q7y:Q (3.2) BS01 rna ? GO:0003723 ... P14119 12185246
    35072 1q7y:R (3.2) BS01 rna ? GO:0003735 ... P12734 12185246
    35073 1q7y:R (3.2) BS02 rna ? GO:0003735 ... P12734 12185246
    35074 1q7y:S (3.2) BS01 rna ? GO:0002181 ... P10970 12185246
    35075 1q7y:T (3.2) BS01 rna ? GO:0000027 ... P12732 12185246
    35076 1q7y:U (3.2) BS01 rna ? GO:0002181 ... P10972 12185246
    35077 1q7y:U (3.2) BS02 MG ? GO:0002181 ... P10972 12185246
    35078 1q7y:V (3.2) BS01 rna ? GO:0003735 ... P14116 12185246
    35079 1q7y:W (3.2) BS01 rna ? GO:0003735 ... P10971 12185246
    35080 1q7y:X (3.2) BS01 rna ? GO:0000463 ... P14121 12185246
    35081 1q7y:X (3.2) BS02 rna ? GO:0000463 ... P14121 12185246
    35082 1q7y:Y (3.2) BS01 rna ? GO:0002181 ... P18138 12185246
    35083 1q7y:Z (3.2) BS01 rna ? GO:0000166 ... P12736 12185246
    35084 1q7y:Z (3.2) BS02 MG ? GO:0000166 ... P12736 12185246
    35085 1q81:1 (2.95) BS01 rna ? GO:0003735 ... P60619 12185246
    35086 1q81:2 (2.95) BS01 rna ? GO:0003723 ... P32410 12185246
    35087 1q81:3 (2.95) BS01 rna ? GO:0003735 ... P22452 12185246
    35088 1q81:4 (2.95) BS01 rna ? GO:0000049 ... P32411 12185246
    35089 1q81:4 (2.95) BS02 MG ? GO:0000049 ... P32411 12185246
    35090 1q81:C (2.95) BS01 rna ? GO:0002181 ... P20276 12185246
    35091 1q81:C (2.95) BS02 MG ? GO:0002181 ... P20276 12185246
    35092 1q81:D (2.95) BS01 rna ? GO:0003723 ... P20279 12185246
    35093 1q81:E (2.95) BS01 rna ? GO:0003723 ... P12735 12185246
    35094 1q81:F (2.95) BS01 rna ? GO:0000049 ... P14124 12185246
    35095 1q81:F (2.95) BS02 rna ? GO:0000049 ... P14124 12185246
    35096 1q81:G (2.95) BS01 rna ? GO:0002181 ... P14135 12185246
    35097 1q81:H (2.95) BS01 rna ? GO:0001682 ... P12743 12185246
    35098 1q81:J (2.95) BS01 rna ? GO:0000027 ... P60617 12185246
    35099 1q81:K (2.95) BS01 rna ? GO:0003729 ... P29198 12185246
    35100 1q81:L (2.95) BS01 rna ? GO:0003735 ... P22450 12185246
    35101 1q81:M (2.95) BS01 rna ? GO:0003735 ... P12737 12185246
    35102 1q81:N (2.95) BS01 rna ? GO:0002181 ... P60618 12185246
    35103 1q81:O (2.95) BS01 rna ? GO:0000027 ... P14123 12185246
    35104 1q81:O (2.95) BS02 rna ? GO:0000027 ... P14123 12185246
    35105 1q81:P (2.95) BS01 rna ? GO:0003723 ... P12733 12185246
    35106 1q81:Q (2.95) BS01 rna ? GO:0003723 ... P14119 12185246
    35107 1q81:R (2.95) BS01 rna ? GO:0003735 ... P12734 12185246
    35108 1q81:R (2.95) BS02 rna ? GO:0003735 ... P12734 12185246
    35109 1q81:S (2.95) BS01 rna ? GO:0002181 ... P10970 12185246
    35110 1q81:T (2.95) BS01 rna ? GO:0000027 ... P12732 12185246
    35111 1q81:U (2.95) BS01 rna ? GO:0002181 ... P10972 12185246
    35112 1q81:U (2.95) BS02 MG ? GO:0002181 ... P10972 12185246
    35113 1q81:V (2.95) BS01 rna ? GO:0003735 ... P14116 12185246
    35114 1q81:W (2.95) BS01 rna ? GO:0003735 ... P10971 12185246
    35115 1q81:X (2.95) BS01 rna ? GO:0000463 ... P14121 12185246
    35116 1q81:X (2.95) BS02 rna ? GO:0000463 ... P14121 12185246
    35117 1q81:Y (2.95) BS01 rna ? GO:0002181 ... P18138 12185246
    35118 1q81:Z (2.95) BS01 rna ? GO:0000166 ... P12736 12185246
    35119 1q81:Z (2.95) BS02 MG ? GO:0000166 ... P12736 12185246
    35120 1q82:1 (2.98) BS01 rna ? GO:0003735 ... P60619 12185246
    35121 1q82:2 (2.98) BS01 rna ? GO:0003723 ... P32410 12185246
    35122 1q82:3 (2.98) BS01 rna ? GO:0003735 ... P22452 12185246
    35123 1q82:4 (2.98) BS01 rna ? GO:0000049 ... P32411 12185246
    35124 1q82:4 (2.98) BS02 MG ? GO:0000049 ... P32411 12185246
    35125 1q82:C (2.98) BS01 rna ? GO:0002181 ... P20276 12185246
    35126 1q82:C (2.98) BS02 MG ? GO:0002181 ... P20276 12185246
    35127 1q82:D (2.98) BS01 rna ? GO:0003723 ... P20279 12185246
    35128 1q82:E (2.98) BS01 rna ? GO:0003723 ... P12735 12185246
    35129 1q82:F (2.98) BS01 rna ? GO:0000049 ... P14124 12185246
    35130 1q82:F (2.98) BS02 rna ? GO:0000049 ... P14124 12185246
    35131 1q82:G (2.98) BS01 rna ? GO:0002181 ... P14135 12185246
    35132 1q82:H (2.98) BS01 rna ? GO:0001682 ... P12743 12185246
    35133 1q82:J (2.98) BS01 rna ? GO:0000027 ... P60617 12185246
    35134 1q82:K (2.98) BS01 rna ? GO:0003729 ... P29198 12185246
    35135 1q82:L (2.98) BS01 rna ? GO:0003735 ... P22450 12185246
    35136 1q82:M (2.98) BS01 rna ? GO:0003735 ... P12737 12185246
    35137 1q82:N (2.98) BS01 rna ? GO:0002181 ... P60618 12185246
    35138 1q82:O (2.98) BS01 rna ? GO:0000027 ... P14123 12185246
    35139 1q82:O (2.98) BS02 rna ? GO:0000027 ... P14123 12185246
    35140 1q82:P (2.98) BS01 rna ? GO:0003723 ... P12733 12185246
    35141 1q82:Q (2.98) BS01 rna ? GO:0003723 ... P14119 12185246
    35142 1q82:R (2.98) BS01 rna ? GO:0003735 ... P12734 12185246
    35143 1q82:R (2.98) BS02 rna ? GO:0003735 ... P12734 12185246
    35144 1q82:S (2.98) BS01 rna ? GO:0002181 ... P10970 12185246
    35145 1q82:T (2.98) BS01 rna ? GO:0000027 ... P12732 12185246
    35146 1q82:U (2.98) BS01 rna ? GO:0002181 ... P10972 12185246
    35147 1q82:U (2.98) BS02 MG ? GO:0002181 ... P10972 12185246
    35148 1q82:V (2.98) BS01 rna ? GO:0003735 ... P14116 12185246
    35149 1q82:W (2.98) BS01 rna ? GO:0003735 ... P10971 12185246
    35150 1q82:X (2.98) BS01 rna ? GO:0000463 ... P14121 12185246
    35151 1q82:X (2.98) BS02 rna ? GO:0000463 ... P14121 12185246
    35152 1q82:Y (2.98) BS01 rna ? GO:0002181 ... P18138 12185246
    35153 1q82:Z (2.98) BS01 rna ? GO:0000166 ... P12736 12185246
    35154 1q82:Z (2.98) BS02 MG ? GO:0000166 ... P12736 12185246
    35155 1q86:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12185246
    35156 1q86:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12185246
    35157 1q86:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12185246
    35158 1q86:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12185246
    35159 1q86:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12185246
    35160 1q86:C (3.0) BS01 rna ? GO:0002181 ... P20276 12185246
    35161 1q86:C (3.0) BS02 MG ? GO:0002181 ... P20276 12185246
    35162 1q86:D (3.0) BS01 rna ? GO:0003723 ... P20279 12185246
    35163 1q86:E (3.0) BS01 rna ? GO:0003723 ... P12735 12185246
    35164 1q86:F (3.0) BS01 rna ? GO:0000049 ... P14124 12185246
    35165 1q86:F (3.0) BS02 rna ? GO:0000049 ... P14124 12185246
    35166 1q86:G (3.0) BS01 rna ? GO:0002181 ... P14135 12185246
    35167 1q86:H (3.0) BS01 rna ? GO:0001682 ... P12743 12185246
    35168 1q86:J (3.0) BS01 rna ? GO:0000027 ... P60617 12185246
    35169 1q86:K (3.0) BS01 rna ? GO:0003729 ... P29198 12185246
    35170 1q86:L (3.0) BS01 rna ? GO:0003735 ... P22450 12185246
    35171 1q86:M (3.0) BS01 rna ? GO:0003735 ... P12737 12185246
    35172 1q86:N (3.0) BS01 rna ? GO:0002181 ... P60618 12185246
    35173 1q86:O (3.0) BS01 rna ? GO:0000027 ... P14123 12185246
    35174 1q86:O (3.0) BS02 rna ? GO:0000027 ... P14123 12185246
    35175 1q86:P (3.0) BS01 rna ? GO:0003723 ... P12733 12185246
    35176 1q86:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12185246
    35177 1q86:R (3.0) BS01 rna ? GO:0003735 ... P12734 12185246
    35178 1q86:R (3.0) BS02 rna ? GO:0003735 ... P12734 12185246
    35179 1q86:S (3.0) BS01 rna ? GO:0002181 ... P10970 12185246
    35180 1q86:T (3.0) BS01 rna ? GO:0000027 ... P12732 12185246
    35181 1q86:U (3.0) BS01 rna ? GO:0002181 ... P10972 12185246
    35182 1q86:U (3.0) BS02 MG ? GO:0002181 ... P10972 12185246
    35183 1q86:V (3.0) BS01 rna ? GO:0003735 ... P14116 12185246
    35184 1q86:W (3.0) BS01 rna ? GO:0003735 ... P10971 12185246
    35185 1q86:X (3.0) BS01 rna ? GO:0000463 ... P14121 12185246
    35186 1q86:X (3.0) BS02 rna ? GO:0000463 ... P14121 12185246
    35187 1q86:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12185246
    35188 1q86:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12185246
    35189 1q86:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12185246
    35190 1q8f:A (1.7) BS01 CA 3.2.2.8 GO:0005509 ... P33022 15130467
    35191 1q8f:B (1.7) BS01 CA 3.2.2.8 GO:0005509 ... P33022 15130467
    35192 1q8f:C (1.7) BS01 CA 3.2.2.8 GO:0005509 ... P33022 15130467
    35193 1q8f:D (1.7) BS01 CA 3.2.2.8 GO:0005509 ... P33022 15130467
    35194 1q8h:A (2.0) BS01 CA ? GO:0001649 ... Q8HYY9 14586470
    35195 1q8h:A (2.0) BS02 CA ? GO:0001649 ... Q8HYY9 14586470
    35196 1q8j:A (1.9) BS01 C2F 2.1.1.13 GO:0042558 ... Q9WYA5 14752199
    35197 1q8j:B (1.9) BS01 C2F 2.1.1.13 GO:0042558 ... Q9WYA5 14752199
    35198 1q8t:A (2.0) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 14656443
    35199 1q8t:A (2.0) BS02 Y27 2.7.11.11 GO:0001669 ... P00517 14656443 MOAD: Kd=17.5uM
    PDBbind: -logKd/Ki=4.76, Kd=17.5uM
    BindingDB: IC50=42000nM
    35200 1q8u:A (1.9) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 14656443
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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