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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    197801 5b5e:C (1.87) BS03 CLA ? GO:0005737 ... D0VWR7 28102667
    197802 5b5e:C (1.87) BS04 CLA ? GO:0005737 ... D0VWR7 28102667
    197803 5b5e:C (1.87) BS05 CLA ? GO:0005737 ... D0VWR7 28102667
    197804 5b5e:C (1.87) BS06 CLA ? GO:0005737 ... D0VWR7 28102667
    197805 5b5e:C (1.87) BS07 CLA ? GO:0005737 ... D0VWR7 28102667
    197806 5b5e:C (1.87) BS08 CLA ? GO:0005737 ... D0VWR7 28102667
    197807 5b5e:C (1.87) BS09 CLA ? GO:0005737 ... D0VWR7 28102667
    197808 5b5e:C (1.87) BS10 CLA ? GO:0005737 ... D0VWR7 28102667
    197809 5b5e:C (1.87) BS11 CLA ? GO:0005737 ... D0VWR7 28102667
    197810 5b5e:C (1.87) BS12 CLA ? GO:0005737 ... D0VWR7 28102667
    197811 5b5e:C (1.87) BS13 CLA ? GO:0005737 ... D0VWR7 28102667
    197812 5b5e:C (1.87) BS14 CLA ? GO:0005737 ... D0VWR7 28102667
    197813 5b5e:D (1.87) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197814 5b5e:D (1.87) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197815 5b5e:D (1.87) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197816 5b5e:D (1.87) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197817 5b5e:D (1.87) BS05 BCT 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197818 5b5e:D (1.87) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197819 5b5e:D (1.87) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197820 5b5e:D (1.87) BS08 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197821 5b5e:D (1.87) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197822 5b5e:D (1.87) BS10 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197823 5b5e:E (1.87) BS01 HEM ? GO:0005506 ... P12238 28102667
    197824 5b5e:F (1.87) BS01 HEM ? GO:0005506 ... P12239 28102667
    197825 5b5e:H (1.87) BS01 CLA ? GO:0009523 ... P19052 28102667
    197826 5b5e:H (1.87) BS02 CLA ? GO:0009523 ... P19052 28102667
    197827 5b5e:H (1.87) BS03 CLA ? GO:0009523 ... P19052 28102667
    197828 5b5e:H (1.87) BS04 RRX ? GO:0009523 ... P19052 28102667
    197829 5b5e:I (1.87) BS01 CLA ? GO:0005737 ... P12240 28102667
    197830 5b5e:J (1.87) BS01 peptide ? GO:0009523 ... Q7DGD4 28102667
    197831 5b5e:J (1.87) BS02 MG ? GO:0009523 ... Q7DGD4 28102667
    197832 5b5e:K (1.87) BS01 peptide ? GO:0005737 ... P19054 28102667
    197833 5b5e:K (1.87) BS02 CLA ? GO:0005737 ... P19054 28102667
    197834 5b5e:K (1.87) BS03 CLA ? GO:0005737 ... P19054 28102667
    197835 5b5e:O (1.87) BS01 CA ? GO:0009523 ... D0VWR2 28102667
    197836 5b5e:V (1.87) BS01 HEC ? GO:0005506 ... P0A387 28102667
    197837 5b5e:X (1.87) BS01 CLA ? GO:0009523 ... D0VWR4 28102667
    197838 5b5e:X (1.87) BS02 RRX ? GO:0009523 ... D0VWR4 28102667
    197839 5b5e:Z (1.87) BS01 peptide ? GO:0009523 ... D0VWR5 28102667
    197840 5b5e:a (1.87) BS01 OEX 1.10.3.9 GO:0005506 ... P51765 28102667
    197841 5b5e:a (1.87) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 28102667
    197842 5b5e:a (1.87) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    197843 5b5e:a (1.87) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    197844 5b5e:a (1.87) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 28102667
    197845 5b5e:a (1.87) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 28102667
    197846 5b5e:a (1.87) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    197847 5b5e:a (1.87) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 28102667
    197848 5b5e:a (1.87) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    197849 5b5e:a (1.87) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    197850 5b5e:b (1.87) BS01 CLA ? GO:0009521 ... D0VWR1 28102667
    197851 5b5e:b (1.87) BS02 CLA ? GO:0009521 ... D0VWR1 28102667
    197852 5b5e:b (1.87) BS03 CLA ? GO:0009521 ... D0VWR1 28102667
    197853 5b5e:b (1.87) BS04 CLA ? GO:0009521 ... D0VWR1 28102667
    197854 5b5e:b (1.87) BS05 CLA ? GO:0009521 ... D0VWR1 28102667
    197855 5b5e:b (1.87) BS06 CLA ? GO:0009521 ... D0VWR1 28102667
    197856 5b5e:b (1.87) BS07 CLA ? GO:0009521 ... D0VWR1 28102667
    197857 5b5e:b (1.87) BS08 CLA ? GO:0009521 ... D0VWR1 28102667
    197858 5b5e:b (1.87) BS09 CLA ? GO:0009521 ... D0VWR1 28102667
    197859 5b5e:b (1.87) BS10 CLA ? GO:0009521 ... D0VWR1 28102667
    197860 5b5e:b (1.87) BS11 CLA ? GO:0009521 ... D0VWR1 28102667
    197861 5b5e:b (1.87) BS12 CLA ? GO:0009521 ... D0VWR1 28102667
    197862 5b5e:b (1.87) BS13 CLA ? GO:0009521 ... D0VWR1 28102667
    197863 5b5e:b (1.87) BS14 CLA ? GO:0009521 ... D0VWR1 28102667
    197864 5b5e:b (1.87) BS15 CLA ? GO:0009521 ... D0VWR1 28102667
    197865 5b5e:b (1.87) BS16 CLA ? GO:0009521 ... D0VWR1 28102667
    197866 5b5e:c (1.87) BS01 OEX ? GO:0005737 ... D0VWR7 28102667
    197867 5b5e:c (1.87) BS02 CA ? GO:0005737 ... D0VWR7 28102667
    197868 5b5e:c (1.87) BS03 CLA ? GO:0005737 ... D0VWR7 28102667
    197869 5b5e:c (1.87) BS04 CLA ? GO:0005737 ... D0VWR7 28102667
    197870 5b5e:c (1.87) BS05 CLA ? GO:0005737 ... D0VWR7 28102667
    197871 5b5e:c (1.87) BS06 CLA ? GO:0005737 ... D0VWR7 28102667
    197872 5b5e:c (1.87) BS07 CLA ? GO:0005737 ... D0VWR7 28102667
    197873 5b5e:c (1.87) BS08 CLA ? GO:0005737 ... D0VWR7 28102667
    197874 5b5e:c (1.87) BS09 CLA ? GO:0005737 ... D0VWR7 28102667
    197875 5b5e:c (1.87) BS10 CLA ? GO:0005737 ... D0VWR7 28102667
    197876 5b5e:c (1.87) BS11 CLA ? GO:0005737 ... D0VWR7 28102667
    197877 5b5e:c (1.87) BS12 CLA ? GO:0005737 ... D0VWR7 28102667
    197878 5b5e:c (1.87) BS13 CLA ? GO:0005737 ... D0VWR7 28102667
    197879 5b5e:c (1.87) BS14 CLA ? GO:0005737 ... D0VWR7 28102667
    197880 5b5e:c (1.87) BS15 CLA ? GO:0005737 ... D0VWR7 28102667
    197881 5b5e:d (1.87) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197882 5b5e:d (1.87) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197883 5b5e:d (1.87) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197884 5b5e:d (1.87) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197885 5b5e:d (1.87) BS05 BCT 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197886 5b5e:d (1.87) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197887 5b5e:d (1.87) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197888 5b5e:d (1.87) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197889 5b5e:d (1.87) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    197890 5b5e:e (1.87) BS01 HEM ? GO:0005506 ... P12238 28102667
    197891 5b5e:f (1.87) BS01 HEM ? GO:0005506 ... P12239 28102667
    197892 5b5e:h (1.87) BS01 CLA ? GO:0009523 ... P19052 28102667
    197893 5b5e:h (1.87) BS02 CLA ? GO:0009523 ... P19052 28102667
    197894 5b5e:h (1.87) BS03 CLA ? GO:0009523 ... P19052 28102667
    197895 5b5e:h (1.87) BS04 CLA ? GO:0009523 ... P19052 28102667
    197896 5b5e:h (1.87) BS05 CLA ? GO:0009523 ... P19052 28102667
    197897 5b5e:h (1.87) BS06 RRX ? GO:0009523 ... P19052 28102667
    197898 5b5e:i (1.87) BS01 CLA ? GO:0005737 ... P12240 28102667
    197899 5b5e:j (1.87) BS01 MG ? GO:0009523 ... Q7DGD4 28102667
    197900 5b5e:k (1.87) BS01 peptide ? GO:0005737 ... P19054 28102667
    197901 5b5e:k (1.87) BS02 CLA ? GO:0005737 ... P19054 28102667
    197902 5b5e:k (1.87) BS03 CLA ? GO:0005737 ... P19054 28102667
    197903 5b5e:o (1.87) BS01 CA ? GO:0009523 ... D0VWR2 28102667
    197904 5b5e:v (1.87) BS01 HEC ? GO:0005506 ... P0A387 28102667
    197905 5b5e:x (1.87) BS01 CLA ? GO:0009523 ... D0VWR4 28102667
    197906 5b5e:z (1.87) BS01 peptide ? GO:0009523 ... D0VWR5 28102667
    197907 5b5e:z (1.87) BS02 CLA ? GO:0009523 ... D0VWR5 28102667
    197908 5b5j:A (1.26) BS01 UTX 3.2.1.17 GO:0003796 ... P00698 27422088
    197909 5b5m:0 (3.3) BS01 CRT ? GO:0005515 ... D2Z0P1 27933779
    197910 5b5m:0 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    197911 5b5m:0 (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    197912 5b5m:0 (3.3) BS04 BCL ? GO:0005515 ... D2Z0P1 27933779
    197913 5b5m:1 (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    197914 5b5m:1 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    197915 5b5m:1 (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    197916 5b5m:1 (3.3) BS04 CRT ? GO:0005515 ... D2Z0P2 27933779
    197917 5b5m:1 (3.3) BS05 BCL ? GO:0005515 ... D2Z0P2 27933779
    197918 5b5m:1 (3.3) BS06 CRT ? GO:0005515 ... D2Z0P2 27933779
    197919 5b5m:2 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    197920 5b5m:2 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    197921 5b5m:2 (3.3) BS03 CRT ? GO:0005515 ... D2Z0P1 27933779
    197922 5b5m:3 (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    197923 5b5m:3 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    197924 5b5m:3 (3.3) BS03 CRT ? GO:0005515 ... D2Z0P2 27933779
    197925 5b5m:3 (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    197926 5b5m:3 (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    197927 5b5m:4 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    197928 5b5m:4 (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    197929 5b5m:4 (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    197930 5b5m:5 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    197931 5b5m:5 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    197932 5b5m:5 (3.3) BS03 CRT ? GO:0005515 ... D2Z0P2 27933779
    197933 5b5m:6 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    197934 5b5m:6 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    197935 5b5m:6 (3.3) BS03 CRT ? GO:0005515 ... D2Z0P1 27933779
    197936 5b5m:7 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    197937 5b5m:7 (3.3) BS02 CRT ? GO:0005515 ... D2Z0P2 27933779
    197938 5b5m:7 (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    197939 5b5m:8 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    197940 5b5m:8 (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    197941 5b5m:8 (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    197942 5b5m:9 (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    197943 5b5m:9 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    197944 5b5m:9 (3.3) BS03 CRT ? GO:0005515 ... D2Z0P2 27933779
    197945 5b5m:9 (3.3) BS04 CRT ? GO:0005515 ... D2Z0P2 27933779
    197946 5b5m:9 (3.3) BS05 BCL ? GO:0005515 ... D2Z0P2 27933779
    197947 5b5m:9 (3.3) BS06 BCL ? GO:0005515 ... D2Z0P2 27933779
    197948 5b5m:A (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    197949 5b5m:A (3.3) BS02 CRT ? GO:0005515 ... D2Z0P2 27933779
    197950 5b5m:A (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    197951 5b5m:A (3.3) BS04 CRT ? GO:0005515 ... D2Z0P2 27933779
    197952 5b5m:A (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    197953 5b5m:AA (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    197954 5b5m:AA (3.3) BS02 CRT ? GO:0005515 ... D2Z0P2 27933779
    197955 5b5m:AA (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    197956 5b5m:AA (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    197957 5b5m:AA (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    197958 5b5m:AA (3.3) BS06 CRT ? GO:0005515 ... D2Z0P2 27933779
    197959 5b5m:AB (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    197960 5b5m:AB (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    197961 5b5m:AB (3.3) BS03 CRT ? GO:0005515 ... D2Z0P1 27933779
    197962 5b5m:AC (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    197963 5b5m:AC (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    197964 5b5m:AC (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    197965 5b5m:AC (3.3) BS04 CRT ? GO:0005515 ... D2Z0P2 27933779
    197966 5b5m:AC (3.3) BS05 BCL ? GO:0005515 ... D2Z0P2 27933779
    197967 5b5m:AC (3.3) BS06 CRT ? GO:0005515 ... D2Z0P2 27933779
    197968 5b5m:AD (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    197969 5b5m:AD (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    197970 5b5m:AD (3.3) BS03 CRT ? GO:0005515 ... D2Z0P1 27933779
    197971 5b5m:AE (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    197972 5b5m:AE (3.3) BS02 PGW ? GO:0005515 ... D2Z0P2 27933779
    197973 5b5m:AE (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    197974 5b5m:AE (3.3) BS04 CRT ? GO:0005515 ... D2Z0P2 27933779
    197975 5b5m:AE (3.3) BS05 BCL ? GO:0005515 ... D2Z0P2 27933779
    197976 5b5m:AE (3.3) BS06 CRT ? GO:0005515 ... D2Z0P2 27933779
    197977 5b5m:AF (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    197978 5b5m:AF (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    197979 5b5m:AF (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    197980 5b5m:AG (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    197981 5b5m:AG (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    197982 5b5m:AG (3.3) BS03 CRT ? GO:0005515 ... D2Z0P2 27933779
    197983 5b5m:AG (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    197984 5b5m:AG (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    197985 5b5m:AH (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    197986 5b5m:AH (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    197987 5b5m:AH (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    197988 5b5m:AI (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    197989 5b5m:AI (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    197990 5b5m:AI (3.3) BS03 CRT ? GO:0005515 ... D2Z0P2 27933779
    197991 5b5m:AI (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    197992 5b5m:AI (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    197993 5b5m:AJ (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    197994 5b5m:AJ (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    197995 5b5m:AJ (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    197996 5b5m:AK (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    197997 5b5m:AK (3.3) BS02 CRT ? GO:0005515 ... D2Z0P2 27933779
    197998 5b5m:AK (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    197999 5b5m:AK (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    198000 5b5m:AK (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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