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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    197601 5b2z:A (1.56) BS03 MG 3.6.5.2 GO:0003924 ... P01112 27180801
    197602 5b2z:A (1.56) BS04 CA 3.6.5.2 GO:0003924 ... P01112 27180801
    197603 5b30:A (1.6) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 27180801
    197604 5b30:A (1.6) BS02 CA 3.6.5.2 GO:0003924 ... P01112 27180801
    197605 5b31:A (2.2) BS01 dna ? GO:0000786 ... P68431 27358293
    197606 5b31:A (2.2) BS02 dna ? GO:0000786 ... P68431 27358293
    197607 5b31:A (2.2) BS03 MN ? GO:0000786 ... P68431 27358293
    197608 5b31:B (2.2) BS01 dna ? GO:0000781 ... P62805 27358293
    197609 5b31:B (2.2) BS02 dna ? GO:0000781 ... P62805 27358293
    197610 5b31:C (2.2) BS01 dna ? GO:0000786 ... P04908 27358293
    197611 5b31:C (2.2) BS02 dna ? GO:0000786 ... P04908 27358293
    197612 5b31:D (2.2) BS01 dna ? GO:0000786 ... P06899 27358293
    197613 5b31:D (2.2) BS02 dna ? GO:0000786 ... P06899 27358293
    197614 5b31:E (2.2) BS01 dna ? GO:0000786 ... P68431 27358293
    197615 5b31:E (2.2) BS02 dna ? GO:0000786 ... P68431 27358293
    197616 5b31:F (2.2) BS01 dna ? GO:0000781 ... P62805 27358293
    197617 5b31:F (2.2) BS02 dna ? GO:0000781 ... P62805 27358293
    197618 5b31:G (2.2) BS01 dna ? GO:0000786 ... P0C0S5 27358293
    197619 5b31:G (2.2) BS02 dna ? GO:0000786 ... P0C0S5 27358293
    197620 5b31:H (2.2) BS01 dna ? GO:0000786 ... P06899 27358293
    197621 5b31:H (2.2) BS02 dna ? GO:0000786 ... P06899 27358293
    197622 5b32:A (2.35) BS01 dna ? GO:0000775 ... P84243 27358293
    197623 5b32:A (2.35) BS02 dna ? GO:0000775 ... P84243 27358293
    197624 5b32:B (2.35) BS01 dna ? GO:0000781 ... P62805 27358293
    197625 5b32:B (2.35) BS02 dna ? GO:0000781 ... P62805 27358293
    197626 5b32:C (2.35) BS01 dna ? GO:0000786 ... P04908 27358293
    197627 5b32:C (2.35) BS02 dna ? GO:0000786 ... P04908 27358293
    197628 5b32:D (2.35) BS01 dna ? GO:0000786 ... P06899 27358293
    197629 5b32:D (2.35) BS02 dna ? GO:0000786 ... P06899 27358293
    197630 5b32:E (2.35) BS01 dna ? GO:0000775 ... P84243 27358293
    197631 5b32:E (2.35) BS02 dna ? GO:0000775 ... P84243 27358293
    197632 5b32:F (2.35) BS01 dna ? GO:0000781 ... P62805 27358293
    197633 5b32:F (2.35) BS02 dna ? GO:0000781 ... P62805 27358293
    197634 5b32:G (2.35) BS01 dna ? GO:0000786 ... P0C0S5 27358293
    197635 5b32:G (2.35) BS02 dna ? GO:0000786 ... P0C0S5 27358293
    197636 5b32:H (2.35) BS01 dna ? GO:0000786 ... P06899 27358293
    197637 5b32:H (2.35) BS02 dna ? GO:0000786 ... P06899 27358293
    197638 5b33:A (2.925) BS01 dna ? GO:0000775 ... P84243 27358293
    197639 5b33:A (2.925) BS02 dna ? GO:0000775 ... P84243 27358293
    197640 5b33:B (2.925) BS01 dna ? GO:0000781 ... P62805 27358293
    197641 5b33:B (2.925) BS02 dna ? GO:0000781 ... P62805 27358293
    197642 5b33:C (2.925) BS01 dna ? GO:0000786 ... P0C0S5 27358293
    197643 5b33:C (2.925) BS02 dna ? GO:0000786 ... P0C0S5 27358293
    197644 5b33:D (2.925) BS01 dna ? GO:0000786 ... P06899 27358293
    197645 5b33:D (2.925) BS02 dna ? GO:0000786 ... P06899 27358293
    197646 5b33:E (2.925) BS01 dna ? GO:0000775 ... P84243 27358293
    197647 5b33:E (2.925) BS02 dna ? GO:0000775 ... P84243 27358293
    197648 5b33:F (2.925) BS01 dna ? GO:0000781 ... P62805 27358293
    197649 5b33:F (2.925) BS02 dna ? GO:0000781 ... P62805 27358293
    197650 5b33:G (2.925) BS01 dna ? GO:0000786 ... P0C0S5 27358293
    197651 5b33:G (2.925) BS02 dna ? GO:0000786 ... P0C0S5 27358293
    197652 5b33:H (2.925) BS01 dna ? GO:0000786 ... P06899 27358293
    197653 5b33:H (2.925) BS02 dna ? GO:0000786 ... P06899 27358293
    197654 5b34:A (2.1) BS01 RET ? GO:0005216 ... P02945 27799539
    197655 5b34:A (2.1) BS02 4QL ? GO:0005216 ... P02945 27799539
    197656 5b35:A (2.35) BS01 RET ? GO:0005216 ... B0R5N9 27799539
    197657 5b36:A (2.15) BS01 PLP 2.5.1.47
    2.5.1.65
    4.2.1.22    		 GO:0004122 ... Q9YBL2 27377295
    197658 5b36:A (2.15) BS02 CYS 2.5.1.47
    2.5.1.65
    4.2.1.22    		 GO:0004122 ... Q9YBL2 27377295
    197659 5b36:B (2.15) BS01 PLP 2.5.1.47
    2.5.1.65
    4.2.1.22    		 GO:0004122 ... Q9YBL2 27377295
    197660 5b36:B (2.15) BS02 CYS 2.5.1.47
    2.5.1.65
    4.2.1.22    		 GO:0004122 ... Q9YBL2 27377295
    197661 5b3a:A (2.14) BS01 0JO 2.5.1.47
    2.5.1.65
    4.2.1.22    		 GO:0004122 ... Q9YBL2 27377295
    197662 5b3a:B (2.14) BS01 0JO 2.5.1.47
    2.5.1.65
    4.2.1.22    		 GO:0004122 ... Q9YBL2 27377295
    197663 5b3i:A (1.89) BS01 HEC ? GO:0005506 ... F7J213 28097774
    197664 5b3i:B (1.89) BS01 HEC ? GO:0005506 ... F7J213 28097774
    197665 5b3i:C (1.89) BS01 HEC ? GO:0005506 ... F7J213 28097774
    197666 5b3i:D (1.89) BS01 HEC ? GO:0005506 ... F7J213 28097774
    197667 5b3r:A (2.0) BS01 ZN 3.5.2.6 GO:0008270 ... Q5U807 27381398
    197668 5b3r:A (2.0) BS02 ZN 3.5.2.6 GO:0008270 ... Q5U807 27381398
    197669 5b3r:B (2.0) BS01 ZN 3.5.2.6 GO:0008270 ... Q5U807 27381398
    197670 5b3r:B (2.0) BS02 ZN 3.5.2.6 GO:0008270 ... Q5U807 27381398
    197671 5b3s:A (1.68) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 N/A
    197672 5b3s:A (1.68) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 N/A
    197673 5b3s:A (1.68) BS03 CU 7.1.1.9 GO:0004129 ... P00396 N/A
    197674 5b3s:A (1.68) BS04 MG 7.1.1.9 GO:0004129 ... P00396 N/A
    197675 5b3s:B (1.68) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 N/A
    197676 5b3s:B (1.68) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 N/A
    197677 5b3s:C (1.68) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    197678 5b3s:C (1.68) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    197679 5b3s:C (1.68) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    197680 5b3s:F (1.68) BS01 ZN ? GO:0005740 ... P00428 N/A
    197681 5b3s:G (1.68) BS01 DMU ? GO:0005743 ... P07471 N/A
    197682 5b3s:J (1.68) BS01 DMU ? GO:0006123 ... P07470 N/A
    197683 5b3s:J (1.68) BS02 DMU ? GO:0006123 ... P07470 N/A
    197684 5b3s:L (1.68) BS01 DMU ? GO:0006123 ... P00430 N/A
    197685 5b3s:L (1.68) BS02 DMU ? GO:0006123 ... P00430 N/A
    197686 5b3s:M (1.68) BS01 DMU ? GO:0006123 ... P10175 N/A
    197687 5b3s:N (1.68) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 N/A
    197688 5b3s:N (1.68) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 N/A
    197689 5b3s:N (1.68) BS03 CU 7.1.1.9 GO:0004129 ... P00396 N/A
    197690 5b3s:N (1.68) BS04 MG 7.1.1.9 GO:0004129 ... P00396 N/A
    197691 5b3s:N (1.68) BS05 DMU 7.1.1.9 GO:0004129 ... P00396 N/A
    197692 5b3s:O (1.68) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 N/A
    197693 5b3s:O (1.68) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 N/A
    197694 5b3s:O (1.68) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 N/A
    197695 5b3s:P (1.68) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    197696 5b3s:P (1.68) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    197697 5b3s:P (1.68) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    197698 5b3s:S (1.68) BS01 ZN ? GO:0005740 ... P00428 N/A
    197699 5b3s:W (1.68) BS01 DMU ? GO:0006123 ... P07470 N/A
    197700 5b3s:W (1.68) BS02 DMU ? GO:0006123 ... P07470 N/A
    197701 5b3s:Z (1.68) BS01 DMU ? GO:0006123 ... P10175 N/A
    197702 5b3w:A (2.4) BS01 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    197703 5b3w:A (2.4) BS02 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    197704 5b3w:B (2.4) BS01 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    197705 5b3w:B (2.4) BS02 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    197706 5b3x:A (2.4) BS01 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    197707 5b3x:A (2.4) BS02 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    197708 5b3y:A (1.901) BS01 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    197709 5b3y:A (1.901) BS02 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    197710 5b3z:A (2.3) BS01 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    197711 5b3z:A (2.3) BS02 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    197712 5b3z:B (2.3) BS01 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    197713 5b3z:B (2.3) BS02 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    197714 5b3z:C (2.3) BS01 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    197715 5b3z:C (2.3) BS02 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    197716 5b3z:D (2.3) BS01 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    197717 5b3z:D (2.3) BS02 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    197718 5b40:A (3.33) BS01 dna ? GO:0000786 ... Q71DI3 N/A
    197719 5b40:A (3.33) BS02 dna ? GO:0000786 ... Q71DI3 N/A
    197720 5b40:B (3.33) BS01 dna ? GO:0000781 ... P62805 N/A
    197721 5b40:B (3.33) BS02 dna ? GO:0000781 ... P62805 N/A
    197722 5b40:C (3.33) BS01 dna ? GO:0000786 ... P04908 N/A
    197723 5b40:C (3.33) BS02 dna ? GO:0000786 ... P04908 N/A
    197724 5b40:D (3.33) BS01 dna ? GO:0000786 ... P06899 N/A
    197725 5b40:D (3.33) BS02 dna ? GO:0000786 ... P06899 N/A
    197726 5b40:E (3.33) BS01 dna ? GO:0000786 ... Q71DI3 N/A
    197727 5b40:E (3.33) BS02 dna ? GO:0000786 ... Q71DI3 N/A
    197728 5b40:F (3.33) BS01 dna ? GO:0000781 ... P62805 N/A
    197729 5b40:F (3.33) BS02 dna ? GO:0000781 ... P62805 N/A
    197730 5b40:G (3.33) BS01 dna ? GO:0000786 ... P04908 N/A
    197731 5b40:G (3.33) BS02 dna ? GO:0000786 ... P04908 N/A
    197732 5b40:H (3.33) BS01 dna ? GO:0000786 ... P06899 N/A
    197733 5b40:H (3.33) BS02 dna ? GO:0000786 ... P06899 N/A
    197734 5b49:A (1.65) BS01 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    197735 5b49:A (1.65) BS02 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    197736 5b49:A (1.65) BS03 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    197737 5b49:B (1.65) BS01 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    197738 5b49:B (1.65) BS02 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    197739 5b49:B (1.65) BS03 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    197740 5b4a:A (1.72) BS01 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    197741 5b4a:B (1.72) BS01 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    197742 5b4b:A (1.6) BS01 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    197743 5b4b:B (1.6) BS01 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    197744 5b4c:A (1.96) BS01 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    197745 5b4c:B (1.96) BS01 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    197746 5b4e:A (2.698) BS01 ZN 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    197747 5b4e:A (2.698) BS02 ZN 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    197748 5b4e:A (2.698) BS03 ANP 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    197749 5b4e:A (2.698) BS04 SF4 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    197750 5b4f:A (2.75) BS01 ZN 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    197751 5b4f:A (2.75) BS02 ZN 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    197752 5b4f:A (2.75) BS03 SF4 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    197753 5b4o:A (1.37) BS01 6DQ 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 21168764
    197754 5b4o:A (1.37) BS02 6DQ 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 21168764
    197755 5b4o:B (1.37) BS01 6DQ 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 21168764
    197756 5b4o:B (1.37) BS02 6DQ 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 21168764
    197757 5b4o:B (1.37) BS03 6DQ 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 21168764
    197758 5b4o:C (1.37) BS01 6DQ 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 21168764
    197759 5b4o:C (1.37) BS02 6DQ 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 21168764
    197760 5b4o:C (1.37) BS03 6DQ 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 21168764
    197761 5b53:A (2.91) BS01 PLP 2.5.1.47 GO:0004124 ... Q8REP3 N/A
    197762 5b55:A (2.14) BS01 PLP 2.5.1.47 GO:0004124 ... Q8REP3 29343611
    197763 5b55:A (2.14) BS02 0JO 2.5.1.47 GO:0004124 ... Q8REP3 29343611
    197764 5b55:B (2.14) BS01 PLP 2.5.1.47 GO:0004124 ... Q8REP3 29343611
    197765 5b55:B (2.14) BS02 0JO 2.5.1.47 GO:0004124 ... Q8REP3 29343611
    197766 5b56:A (2.3) BS01 peptide ? GO:0005737 ... P52293 27181198
    197767 5b56:A (2.3) BS02 peptide ? GO:0005737 ... P52293 27181198
    197768 5b56:B (2.3) BS01 peptide ? GO:0005737 ... P52293 27181198
    197769 5b56:B (2.3) BS02 peptide ? GO:0005737 ... P52293 27181198
    197770 5b57:A (2.8) BS01 DMU ? GO:0005886 ... B4EKB4 27830695
    197771 5b57:B (2.8) BS01 DMU ? GO:0005886 ... B4EKB4 27830695
    197772 5b59:A (2.0) BS01 KTO 3.2.1.17 GO:0003796 ... P00698 27534812
    197773 5b5e:A (1.87) BS01 OEX 1.10.3.9 GO:0005506 ... P51765 28102667
    197774 5b5e:A (1.87) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 28102667
    197775 5b5e:A (1.87) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    197776 5b5e:A (1.87) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    197777 5b5e:A (1.87) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 28102667
    197778 5b5e:A (1.87) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    197779 5b5e:A (1.87) BS07 BCT 1.10.3.9 GO:0005506 ... P51765 28102667
    197780 5b5e:A (1.87) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    197781 5b5e:A (1.87) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    197782 5b5e:A (1.87) BS10 PHO 1.10.3.9 GO:0005506 ... P51765 28102667
    197783 5b5e:B (1.87) BS01 CLA ? GO:0009521 ... D0VWR1 28102667
    197784 5b5e:B (1.87) BS02 CLA ? GO:0009521 ... D0VWR1 28102667
    197785 5b5e:B (1.87) BS03 CLA ? GO:0009521 ... D0VWR1 28102667
    197786 5b5e:B (1.87) BS04 CLA ? GO:0009521 ... D0VWR1 28102667
    197787 5b5e:B (1.87) BS05 CLA ? GO:0009521 ... D0VWR1 28102667
    197788 5b5e:B (1.87) BS06 CLA ? GO:0009521 ... D0VWR1 28102667
    197789 5b5e:B (1.87) BS07 CLA ? GO:0009521 ... D0VWR1 28102667
    197790 5b5e:B (1.87) BS08 CLA ? GO:0009521 ... D0VWR1 28102667
    197791 5b5e:B (1.87) BS09 CLA ? GO:0009521 ... D0VWR1 28102667
    197792 5b5e:B (1.87) BS10 CLA ? GO:0009521 ... D0VWR1 28102667
    197793 5b5e:B (1.87) BS11 CLA ? GO:0009521 ... D0VWR1 28102667
    197794 5b5e:B (1.87) BS12 CLA ? GO:0009521 ... D0VWR1 28102667
    197795 5b5e:B (1.87) BS13 CLA ? GO:0009521 ... D0VWR1 28102667
    197796 5b5e:B (1.87) BS14 CLA ? GO:0009521 ... D0VWR1 28102667
    197797 5b5e:B (1.87) BS15 CLA ? GO:0009521 ... D0VWR1 28102667
    197798 5b5e:B (1.87) BS16 CLA ? GO:0009521 ... D0VWR1 28102667
    197799 5b5e:C (1.87) BS01 OEX ? GO:0005737 ... D0VWR7 28102667
    197800 5b5e:C (1.87) BS02 CLA ? GO:0005737 ... D0VWR7 28102667
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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