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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    191401 4ysy:C (3.1) BS01 E24 ? GO:0005515 ... P92506 26198225
    191402 4ysy:C (3.1) BS02 HEM ? GO:0005515 ... P92506 26198225
    191403 4ysy:C (3.1) BS03 EPH ? GO:0005515 ... P92506 26198225
    191404 4ysy:D (3.1) BS01 E24 ? GO:0005515 ... P92507 26198225
    191405 4ysy:D (3.1) BS02 HEM ? GO:0005515 ... P92507 26198225
    191406 4ysy:D (3.1) BS03 EPH ? GO:0005515 ... P92507 26198225
    191407 4ysy:E (3.1) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    191408 4ysy:F (3.1) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    191409 4ysy:F (3.1) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    191410 4ysy:F (3.1) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    191411 4ysy:F (3.1) BS04 E24 1.3.5.1 GO:0005515 ... O44074 26198225
    191412 4ysy:G (3.1) BS01 E24 ? GO:0005515 ... P92506 26198225
    191413 4ysy:G (3.1) BS02 HEM ? GO:0005515 ... P92506 26198225
    191414 4ysy:G (3.1) BS03 EPH ? GO:0005515 ... P92506 26198225
    191415 4ysy:H (3.1) BS01 E24 ? GO:0005515 ... P92507 26198225
    191416 4ysy:H (3.1) BS02 HEM ? GO:0005515 ... P92507 26198225
    191417 4ysy:H (3.1) BS03 EPH ? GO:0005515 ... P92507 26198225
    191418 4ysz:A (3.3) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    191419 4ysz:B (3.3) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    191420 4ysz:B (3.3) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    191421 4ysz:B (3.3) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    191422 4ysz:B (3.3) BS04 12J 1.3.5.1 GO:0005515 ... O44074 26198225
    191423 4ysz:C (3.3) BS01 HEM ? GO:0005515 ... P92506 26198225
    191424 4ysz:C (3.3) BS02 12J ? GO:0005515 ... P92506 26198225
    191425 4ysz:D (3.3) BS01 HEM ? GO:0005515 ... P92507 26198225
    191426 4ysz:D (3.3) BS02 12J ? GO:0005515 ... P92507 26198225
    191427 4ysz:D (3.3) BS03 EPH ? GO:0005515 ... P92507 26198225
    191428 4ysz:E (3.3) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    191429 4ysz:F (3.3) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    191430 4ysz:F (3.3) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    191431 4ysz:F (3.3) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    191432 4ysz:F (3.3) BS04 12J 1.3.5.1 GO:0005515 ... O44074 26198225
    191433 4ysz:G (3.3) BS01 HEM ? GO:0005515 ... P92506 26198225
    191434 4ysz:G (3.3) BS02 12J ? GO:0005515 ... P92506 26198225
    191435 4ysz:H (3.3) BS01 HEM ? GO:0005515 ... P92507 26198225
    191436 4ysz:H (3.3) BS02 12J ? GO:0005515 ... P92507 26198225
    191437 4ysz:H (3.3) BS03 EPH ? GO:0005515 ... P92507 26198225
    191438 4yt0:A (3.66) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    191439 4yt0:B (3.66) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    191440 4yt0:B (3.66) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    191441 4yt0:B (3.66) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    191442 4yt0:B (3.66) BS04 MRN 1.3.5.1 GO:0005515 ... O44074 26198225
    191443 4yt0:C (3.66) BS01 HEM ? GO:0005515 ... P92506 26198225
    191444 4yt0:C (3.66) BS02 MRN ? GO:0005515 ... P92506 26198225
    191445 4yt0:D (3.66) BS01 HEM ? GO:0005515 ... P92507 26198225
    191446 4yt0:E (3.66) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    191447 4yt0:F (3.66) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    191448 4yt0:F (3.66) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    191449 4yt0:F (3.66) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    191450 4yt0:F (3.66) BS04 MRN 1.3.5.1 GO:0005515 ... O44074 26198225
    191451 4yt0:G (3.66) BS01 HEM ? GO:0005515 ... P92506 26198225
    191452 4yt0:G (3.66) BS02 MRN ? GO:0005515 ... P92506 26198225
    191453 4yt0:H (3.66) BS01 HEM ? GO:0005515 ... P92507 26198225
    191454 4yt1:B (2.2) BS01 JJB ? GO:0003677 ... P37231 26025876
    191455 4yt3:A (1.8) BS01 HEM 1.14.15.8
    1.14.99.-    		 GO:0004497 ... Q06069 26864272
    191456 4yt3:B (1.8) BS01 HEM 1.14.15.8
    1.14.99.-    		 GO:0004497 ... Q06069 26864272
    191457 4yta:A (1.2) BS01 CA 3.4.21.4 GO:0004175 ... P00760 22751665
    191458 4ytm:A (3.4) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    191459 4ytm:B (3.4) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    191460 4ytm:B (3.4) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    191461 4ytm:B (3.4) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    191462 4ytm:B (3.4) BS04 F6A 1.3.5.1 GO:0005515 ... O44074 26198225
    191463 4ytm:C (3.4) BS01 HEM ? GO:0005515 ... P92506 26198225
    191464 4ytm:C (3.4) BS02 F6A ? GO:0005515 ... P92506 26198225
    191465 4ytm:C (3.4) BS03 EPH ? GO:0005515 ... P92506 26198225
    191466 4ytm:D (3.4) BS01 HEM ? GO:0005515 ... P92507 26198225
    191467 4ytm:D (3.4) BS02 F6A ? GO:0005515 ... P92507 26198225
    191468 4ytm:D (3.4) BS03 EPH ? GO:0005515 ... P92507 26198225
    191469 4ytm:E (3.4) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    191470 4ytm:F (3.4) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    191471 4ytm:F (3.4) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    191472 4ytm:F (3.4) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    191473 4ytm:F (3.4) BS04 F6A 1.3.5.1 GO:0005515 ... O44074 26198225
    191474 4ytm:G (3.4) BS01 HEM ? GO:0005515 ... P92506 26198225
    191475 4ytm:G (3.4) BS02 F6A ? GO:0005515 ... P92506 26198225
    191476 4ytm:H (3.4) BS01 HEM ? GO:0005515 ... P92507 26198225
    191477 4ytm:H (3.4) BS02 F6A ? GO:0005515 ... P92507 26198225
    191478 4ytn:A (3.0) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 N/A
    191479 4ytn:B (3.0) BS01 FES 1.3.5.1 GO:0005515 ... O44074 N/A
    191480 4ytn:B (3.0) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 N/A
    191481 4ytn:B (3.0) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 N/A
    191482 4ytn:B (3.0) BS04 FD8 1.3.5.1 GO:0005515 ... O44074 N/A
    191483 4ytn:C (3.0) BS01 HEM ? GO:0005515 ... P92506 N/A
    191484 4ytn:C (3.0) BS02 FD8 ? GO:0005515 ... P92506 N/A
    191485 4ytn:D (3.0) BS01 HEM ? GO:0005515 ... P92507 N/A
    191486 4ytn:D (3.0) BS02 FD8 ? GO:0005515 ... P92507 N/A
    191487 4ytn:E (3.0) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 N/A
    191488 4ytn:F (3.0) BS01 FES 1.3.5.1 GO:0005515 ... O44074 N/A
    191489 4ytn:F (3.0) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 N/A
    191490 4ytn:F (3.0) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 N/A
    191491 4ytn:F (3.0) BS04 FD8 1.3.5.1 GO:0005515 ... O44074 N/A
    191492 4ytn:G (3.0) BS01 FD8 ? GO:0005515 ... P92506 N/A
    191493 4ytn:G (3.0) BS02 HEM ? GO:0005515 ... P92506 N/A
    191494 4ytn:H (3.0) BS01 FD8 ? GO:0005515 ... P92507 N/A
    191495 4ytn:H (3.0) BS02 HEM ? GO:0005515 ... P92507 N/A
    191496 4ytp:A (3.1) BS01 FAD 1.3.5.1 GO:0005515 ... Q0QF01 26198225
    191497 4ytp:B (3.1) BS01 FES 1.3.5.1 GO:0005515 ... Q007T0 26198225
    191498 4ytp:B (3.1) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 26198225
    191499 4ytp:B (3.1) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 26198225
    191500 4ytp:C (3.1) BS01 HEM ? GO:0005515 ... D0VWV4 26198225
    191501 4ytp:C (3.1) BS02 E23 ? GO:0005515 ... D0VWV4 26198225
    191502 4ytp:D (3.1) BS01 HEM ? GO:0005515 ... A5GZW8 26198225
    191503 4ytp:D (3.1) BS02 E23 ? GO:0005515 ... A5GZW8 26198225
    191504 4yty:A (2.2) BS01 FES 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191505 4yty:A (2.2) BS02 FES 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191506 4yty:A (2.2) BS03 CA 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191507 4yty:A (2.2) BS04 FAD 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191508 4yty:A (2.2) BS05 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191509 4yty:A (2.2) BS06 BCT 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191510 4yty:A (2.2) BS07 NAI 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191511 4yty:B (2.2) BS01 FES 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191512 4yty:B (2.2) BS02 FES 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191513 4yty:B (2.2) BS03 CA 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191514 4yty:B (2.2) BS04 FAD 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191515 4yty:B (2.2) BS05 BCT 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191516 4yty:B (2.2) BS06 NAI 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191517 4ytz:A (2.3) BS01 FES 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191518 4ytz:A (2.3) BS02 FES 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191519 4ytz:A (2.3) BS03 FAD 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191520 4ytz:A (2.3) BS04 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191521 4ytz:A (2.3) BS05 BCT 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191522 4ytz:A (2.3) BS06 CA 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191523 4ytz:A (2.3) BS07 CA 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191524 4ytz:B (2.3) BS01 FES 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191525 4ytz:B (2.3) BS02 FES 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191526 4ytz:B (2.3) BS03 FAD 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191527 4ytz:B (2.3) BS04 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191528 4ytz:B (2.3) BS05 BCT 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191529 4ytz:B (2.3) BS06 CA 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191530 4ytz:B (2.3) BS07 CA 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    191531 4yu0:A (1.26) BS01 GLU ? GO:0015276 ... P19491 N/A
    191532 4yu0:B (1.26) BS01 GLU ? GO:0015276 ... P19491 N/A
    191533 4yu1:A (1.02) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 N/A
    191534 4yu1:A (1.02) BS02 53N 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 N/A
    191535 4yu3:A (2.45) BS01 HEM ? GO:0004601 ... A0A0R4I977 N/A
    191536 4yu3:A (2.45) BS02 OXY ? GO:0004601 ... A0A0R4I977 N/A
    191537 4yu3:B (2.45) BS01 HEM ? GO:0004601 ... A0A0R4I978 N/A
    191538 4yu3:B (2.45) BS02 OXY ? GO:0004601 ... A0A0R4I978 N/A
    191539 4yu4:A (2.8) BS01 HEM ? GO:0004601 ... A0A0R4I977 N/A
    191540 4yu4:B (2.8) BS01 HEM ? GO:0004601 ... A0A0R4I978 N/A
    191541 4yu4:C (2.8) BS01 HEM ? GO:0004601 ... A0A0R4I977 N/A
    191542 4yu4:D (2.8) BS01 HEM ? GO:0004601 ... A0A0R4I978 N/A
    191543 4yu7:A (1.647) BS01 DHC ? GO:0004623 ... P58399 26192963
    191544 4yu7:A (1.647) BS02 DHC ? GO:0004623 ... P58399 26192963
    191545 4yu7:B (1.647) BS01 DHC ? GO:0004623 ... P58399 26192963
    191546 4yu7:B (1.647) BS02 DHC ? GO:0004623 ... P58399 26192963
    191547 4yu9:A (2.1) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 26249687
    191548 4yu9:B (2.1) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 26249687
    191549 4yu9:C (2.1) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 26249687
    191550 4yua:A (2.0) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 25980608
    191551 4yua:A (2.0) BS02 REF 2.4.1.1 GO:0000166 ... P00489 25980608 MOAD: Ki=13.4uM
    191552 4yuq:A (2.8) BS01 CA ? GO:0004672 ... Q3HNM4 N/A
    191553 4yuq:A (2.8) BS02 CA ? GO:0004672 ... Q3HNM4 N/A
    191554 4yuq:A (2.8) BS03 CA ? GO:0004672 ... Q3HNM4 N/A
    191555 4yuq:A (2.8) BS04 CA ? GO:0004672 ... Q3HNM4 N/A
    191556 4yuq:A (2.8) BS05 KS1 ? GO:0004672 ... Q3HNM4 N/A
    191557 4yuq:B (2.8) BS01 CA ? GO:0004672 ... Q3HNM4 N/A
    191558 4yuq:B (2.8) BS02 CA ? GO:0004672 ... Q3HNM4 N/A
    191559 4yuq:B (2.8) BS03 CA ? GO:0004672 ... Q3HNM4 N/A
    191560 4yuq:B (2.8) BS04 CA ? GO:0004672 ... Q3HNM4 N/A
    191561 4yuq:B (2.8) BS05 KS1 ? GO:0004672 ... Q3HNM4 N/A
    191562 4yuu:A1 (2.77) BS01 peptide 1.10.3.9 GO:0005506 ... O19895 26757821
    191563 4yuu:A1 (2.77) BS02 peptide 1.10.3.9 GO:0005506 ... O19895 26757821
    191564 4yuu:A1 (2.77) BS03 CLA 1.10.3.9 GO:0005506 ... O19895 26757821
    191565 4yuu:A1 (2.77) BS04 CLA 1.10.3.9 GO:0005506 ... O19895 26757821
    191566 4yuu:A1 (2.77) BS05 CLA 1.10.3.9 GO:0005506 ... O19895 26757821
    191567 4yuu:A1 (2.77) BS06 CLA 1.10.3.9 GO:0005506 ... O19895 26757821
    191568 4yuu:A1 (2.77) BS07 OEX 1.10.3.9 GO:0005506 ... O19895 26757821
    191569 4yuu:A1 (2.77) BS08 PHO 1.10.3.9 GO:0005506 ... O19895 26757821
    191570 4yuu:A1 (2.77) BS09 FE 1.10.3.9 GO:0005506 ... O19895 26757821
    191571 4yuu:A1 (2.77) BS10 CLA 1.10.3.9 GO:0005506 ... O19895 26757821
    191572 4yuu:A1 (2.77) BS11 PHO 1.10.3.9 GO:0005506 ... O19895 26757821
    191573 4yuu:A2 (2.77) BS01 CLA 1.10.3.9 GO:0005506 ... O19895 26757821
    191574 4yuu:A2 (2.77) BS02 CLA 1.10.3.9 GO:0005506 ... O19895 26757821
    191575 4yuu:A2 (2.77) BS03 CLA 1.10.3.9 GO:0005506 ... O19895 26757821
    191576 4yuu:A2 (2.77) BS04 OEX 1.10.3.9 GO:0005506 ... O19895 26757821
    191577 4yuu:A2 (2.77) BS05 PHO 1.10.3.9 GO:0005506 ... O19895 26757821
    191578 4yuu:A2 (2.77) BS06 FE 1.10.3.9 GO:0005506 ... O19895 26757821
    191579 4yuu:A2 (2.77) BS07 BCT 1.10.3.9 GO:0005506 ... O19895 26757821
    191580 4yuu:A2 (2.77) BS08 CLA 1.10.3.9 GO:0005506 ... O19895 26757821
    191581 4yuu:A2 (2.77) BS09 CLA 1.10.3.9 GO:0005506 ... O19895 26757821
    191582 4yuu:A2 (2.77) BS10 PHO 1.10.3.9 GO:0005506 ... O19895 26757821
    191583 4yuu:B1 (2.77) BS01 CLA ? GO:0009507 ... O19928 26757821
    191584 4yuu:B1 (2.77) BS02 CLA ? GO:0009507 ... O19928 26757821
    191585 4yuu:B1 (2.77) BS03 CLA ? GO:0009507 ... O19928 26757821
    191586 4yuu:B1 (2.77) BS04 CLA ? GO:0009507 ... O19928 26757821
    191587 4yuu:B1 (2.77) BS05 CLA ? GO:0009507 ... O19928 26757821
    191588 4yuu:B1 (2.77) BS06 CLA ? GO:0009507 ... O19928 26757821
    191589 4yuu:B1 (2.77) BS07 CLA ? GO:0009507 ... O19928 26757821
    191590 4yuu:B1 (2.77) BS08 CLA ? GO:0009507 ... O19928 26757821
    191591 4yuu:B1 (2.77) BS09 CLA ? GO:0009507 ... O19928 26757821
    191592 4yuu:B1 (2.77) BS10 CLA ? GO:0009507 ... O19928 26757821
    191593 4yuu:B1 (2.77) BS11 CLA ? GO:0009507 ... O19928 26757821
    191594 4yuu:B1 (2.77) BS12 CLA ? GO:0009507 ... O19928 26757821
    191595 4yuu:B1 (2.77) BS13 CLA ? GO:0009507 ... O19928 26757821
    191596 4yuu:B1 (2.77) BS14 CLA ? GO:0009507 ... O19928 26757821
    191597 4yuu:B1 (2.77) BS15 CLA ? GO:0009507 ... O19928 26757821
    191598 4yuu:B1 (2.77) BS16 CLA ? GO:0009507 ... O19928 26757821
    191599 4yuu:B2 (2.77) BS01 CLA ? GO:0009507 ... O19928 26757821
    191600 4yuu:B2 (2.77) BS02 CLA ? GO:0009507 ... O19928 26757821
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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