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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    172801 4v7z:CN (3.1) BS02 ZN N/A GO:0003735 ... N/A 20876130
    172802 4v7z:CO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 20876130
    172803 4v7z:CO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 20876130
    172804 4v7z:CP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 20876130
    172805 4v7z:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 20876130
    172806 4v7z:CR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 20876130
    172807 4v7z:CS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 20876130
    172808 4v7z:CT (3.1) BS01 rna ? GO:0003723 ... P80380 20876130
    172809 4v7z:D0 (3.1) BS01 rna ? GO:0003735 ... P60493 20876130
    172810 4v7z:D0 (3.1) BS02 rna ? GO:0003735 ... P60493 20876130
    172811 4v7z:D1 (3.1) BS01 rna ? GO:0003735 ... P60494 20876130
    172812 4v7z:D2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 20876130
    172813 4v7z:D3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 20876130
    172814 4v7z:D3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 20876130
    172815 4v7z:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 20876130
    172816 4v7z:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 20876130
    172817 4v7z:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 20876130
    172818 4v7z:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 20876130
    172819 4v7z:DD (3.1) BS01 rna ? GO:0002181 ... P60405 20876130
    172820 4v7z:DD (3.1) BS02 MG ? GO:0002181 ... P60405 20876130
    172821 4v7z:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 20876130
    172822 4v7z:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 20876130
    172823 4v7z:DF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 20876130
    172824 4v7z:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 20876130
    172825 4v7z:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 20876130
    172826 4v7z:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 20876130
    172827 4v7z:DI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 20876130
    172828 4v7z:DN (3.1) BS01 rna ? GO:0003729 ... P60488 20876130
    172829 4v7z:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 20876130
    172830 4v7z:DP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 20876130
    172831 4v7z:DQ (3.1) BS01 rna ? GO:0000049 ... P60489 20876130
    172832 4v7z:DQ (3.1) BS02 rna ? GO:0000049 ... P60489 20876130
    172833 4v7z:DR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 20876130
    172834 4v7z:DR (3.1) BS02 MG ? GO:0003735 ... Q9Z9H5 20876130
    172835 4v7z:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 20876130
    172836 4v7z:DS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 20876130
    172837 4v7z:DT (3.1) BS01 rna ? GO:0003735 ... P60490 20876130
    172838 4v7z:DT (3.1) BS02 rna ? GO:0003735 ... P60490 20876130
    172839 4v7z:DU (3.1) BS01 rna ? GO:0000027 ... P60491 20876130
    172840 4v7z:DV (3.1) BS01 rna ? GO:0003723 ... P60492 20876130
    172841 4v7z:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 20876130
    172842 4v7z:DX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 20876130
    172843 4v7z:DY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 20876130
    172844 4v7z:DZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 20876130
    172845 4v7z:DZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 20876130
    172846 4v81:A (3.8) BS01 ADP ? GO:0005515 ... P12612 21701561
    172847 4v81:A (3.8) BS02 BEF ? GO:0005515 ... P12612 21701561
    172848 4v81:B (3.8) BS01 ADP ? GO:0005515 ... P39076 21701561
    172849 4v81:B (3.8) BS02 BEF ? GO:0005515 ... P39076 21701561
    172850 4v81:D (3.8) BS01 ADP ? GO:0005524 ... P39078 21701561
    172851 4v81:D (3.8) BS02 BEF ? GO:0005524 ... P39078 21701561
    172852 4v81:E (3.8) BS01 ADP ? GO:0005524 ... P40413 21701561
    172853 4v81:F (3.8) BS01 ADP ? GO:0005524 ... P39079 21701561
    172854 4v81:F (3.8) BS02 BEF ? GO:0005524 ... P39079 21701561
    172855 4v81:G (3.8) BS01 ADP ? GO:0005524 ... P42943 21701561
    172856 4v81:H (3.8) BS01 ADP ? GO:0005524 ... P47079 21701561
    172857 4v81:H (3.8) BS02 BEF ? GO:0005524 ... P47079 21701561
    172858 4v81:J (3.8) BS01 ADP ? GO:0005515 ... P39076 21701561
    172859 4v81:J (3.8) BS02 BEF ? GO:0005515 ... P39076 21701561
    172860 4v81:L (3.8) BS01 ADP ? GO:0005524 ... P39078 21701561
    172861 4v81:L (3.8) BS02 BEF ? GO:0005524 ... P39078 21701561
    172862 4v81:M (3.8) BS01 ADP ? GO:0005524 ... P40413 21701561
    172863 4v81:M (3.8) BS02 BEF ? GO:0005524 ... P40413 21701561
    172864 4v81:N (3.8) BS01 ADP ? GO:0005524 ... P39079 21701561
    172865 4v81:N (3.8) BS02 BEF ? GO:0005524 ... P39079 21701561
    172866 4v81:P (3.8) BS01 ADP ? GO:0005524 ... P47079 21701561
    172867 4v81:P (3.8) BS02 BEF ? GO:0005524 ... P47079 21701561
    172868 4v81:a (3.8) BS01 ADP ? GO:0005515 ... P12612 21701561
    172869 4v81:a (3.8) BS02 BEF ? GO:0005515 ... P12612 21701561
    172870 4v81:b (3.8) BS01 ADP ? GO:0005515 ... P39076 21701561
    172871 4v81:b (3.8) BS02 BEF ? GO:0005515 ... P39076 21701561
    172872 4v81:e (3.8) BS01 ADP ? GO:0005524 ... P40413 21701561
    172873 4v81:e (3.8) BS02 BEF ? GO:0005524 ... P40413 21701561
    172874 4v81:f (3.8) BS01 ADP ? GO:0005524 ... P39079 21701561
    172875 4v81:f (3.8) BS02 BEF ? GO:0005524 ... P39079 21701561
    172876 4v81:g (3.8) BS01 ADP ? GO:0005524 ... P42943 21701561
    172877 4v81:h (3.8) BS01 ADP ? GO:0005524 ... P47079 21701561
    172878 4v81:h (3.8) BS02 BEF ? GO:0005524 ... P47079 21701561
    172879 4v81:l (3.8) BS01 ADP ? GO:0005524 ... P39078 21701561
    172880 4v81:l (3.8) BS02 BEF ? GO:0005524 ... P39078 21701561
    172881 4v81:m (3.8) BS01 ADP ? GO:0005524 ... P40413 21701561
    172882 4v81:m (3.8) BS02 BEF ? GO:0005524 ... P40413 21701561
    172883 4v81:n (3.8) BS01 ADP ? GO:0005524 ... P39079 21701561
    172884 4v81:n (3.8) BS02 BEF ? GO:0005524 ... P39079 21701561
    172885 4v81:p (3.8) BS01 ADP ? GO:0005524 ... P47079 21701561
    172886 4v81:p (3.8) BS02 BEF ? GO:0005524 ... P47079 21701561
    172887 4v82:AA (3.2) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 21367867
    172888 4v82:AA (3.2) BS02 BCT 1.10.3.9 GO:0005506 ... P0A444 21367867
    172889 4v82:AA (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    172890 4v82:AA (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    172891 4v82:AA (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    172892 4v82:AA (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    172893 4v82:AA (3.2) BS07 MST 1.10.3.9 GO:0005506 ... P0A444 21367867
    172894 4v82:AA (3.2) BS08 OEC 1.10.3.9 GO:0005506 ... P0A444 21367867
    172895 4v82:AA (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    172896 4v82:AA (3.2) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 21367867
    172897 4v82:AA (3.2) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 21367867
    172898 4v82:AB (3.2) BS01 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172899 4v82:AB (3.2) BS02 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172900 4v82:AB (3.2) BS03 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172901 4v82:AB (3.2) BS04 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172902 4v82:AB (3.2) BS05 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172903 4v82:AB (3.2) BS06 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172904 4v82:AB (3.2) BS07 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172905 4v82:AB (3.2) BS08 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172906 4v82:AB (3.2) BS09 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172907 4v82:AB (3.2) BS10 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172908 4v82:AB (3.2) BS11 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172909 4v82:AB (3.2) BS12 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172910 4v82:AB (3.2) BS13 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172911 4v82:AB (3.2) BS14 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172912 4v82:AB (3.2) BS15 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172913 4v82:AB (3.2) BS16 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172914 4v82:AC (3.2) BS01 CLA ? GO:0005737 ... Q8DIF8 21367867
    172915 4v82:AC (3.2) BS02 CLA ? GO:0005737 ... Q8DIF8 21367867
    172916 4v82:AC (3.2) BS03 CLA ? GO:0005737 ... Q8DIF8 21367867
    172917 4v82:AC (3.2) BS04 CLA ? GO:0005737 ... Q8DIF8 21367867
    172918 4v82:AC (3.2) BS05 CLA ? GO:0005737 ... Q8DIF8 21367867
    172919 4v82:AC (3.2) BS06 CLA ? GO:0005737 ... Q8DIF8 21367867
    172920 4v82:AC (3.2) BS07 CLA ? GO:0005737 ... Q8DIF8 21367867
    172921 4v82:AC (3.2) BS08 CLA ? GO:0005737 ... Q8DIF8 21367867
    172922 4v82:AC (3.2) BS09 CLA ? GO:0005737 ... Q8DIF8 21367867
    172923 4v82:AC (3.2) BS10 CLA ? GO:0005737 ... Q8DIF8 21367867
    172924 4v82:AC (3.2) BS11 CLA ? GO:0005737 ... Q8DIF8 21367867
    172925 4v82:AC (3.2) BS12 CLA ? GO:0005737 ... Q8DIF8 21367867
    172926 4v82:AC (3.2) BS13 CLA ? GO:0005737 ... Q8DIF8 21367867
    172927 4v82:AD (3.2) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    172928 4v82:AD (3.2) BS02 BCT 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    172929 4v82:AD (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    172930 4v82:AD (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    172931 4v82:AD (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    172932 4v82:AD (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    172933 4v82:AD (3.2) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    172934 4v82:AD (3.2) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    172935 4v82:AD (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    172936 4v82:AE (3.2) BS01 peptide ? GO:0005506 ... Q8DIP0 21367867
    172937 4v82:AE (3.2) BS02 HEM ? GO:0005506 ... Q8DIP0 21367867
    172938 4v82:AF (3.2) BS01 HEM ? GO:0005506 ... Q8DIN9 21367867
    172939 4v82:AH (3.2) BS01 CLA ? GO:0009523 ... Q8DJ43 21367867
    172940 4v82:AH (3.2) BS02 CLA ? GO:0009523 ... Q8DJ43 21367867
    172941 4v82:AH (3.2) BS03 CLA ? GO:0009523 ... Q8DJ43 21367867
    172942 4v82:AH (3.2) BS04 CLA ? GO:0009523 ... Q8DJ43 21367867
    172943 4v82:AI (3.2) BS01 CLA ? GO:0005737 ... Q8DJZ6 21367867
    172944 4v82:AI (3.2) BS02 CLA ? GO:0005737 ... Q8DJZ6 21367867
    172945 4v82:AK (3.2) BS01 peptide ? GO:0009523 ... Q9F1K9 21367867
    172946 4v82:AK (3.2) BS02 CLA ? GO:0009523 ... Q9F1K9 21367867
    172947 4v82:AK (3.2) BS03 CLA ? GO:0009523 ... Q9F1K9 21367867
    172948 4v82:AK (3.2) BS04 CA ? GO:0009523 ... Q9F1K9 21367867
    172949 4v82:AV (3.2) BS01 HEM ? GO:0005506 ... P0A386 21367867
    172950 4v82:AZ (3.2) BS01 peptide ? GO:0009523 ... Q8DHJ2 21367867
    172951 4v82:AZ (3.2) BS02 CLA ? GO:0009523 ... Q8DHJ2 21367867
    172952 4v82:BA (3.2) BS01 BCT 1.10.3.9 GO:0005506 ... P0A444 21367867
    172953 4v82:BA (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    172954 4v82:BA (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    172955 4v82:BA (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    172956 4v82:BA (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    172957 4v82:BA (3.2) BS06 MST 1.10.3.9 GO:0005506 ... P0A444 21367867
    172958 4v82:BA (3.2) BS07 OEC 1.10.3.9 GO:0005506 ... P0A444 21367867
    172959 4v82:BA (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    172960 4v82:BA (3.2) BS09 FE2 1.10.3.9 GO:0005506 ... P0A444 21367867
    172961 4v82:BA (3.2) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 21367867
    172962 4v82:BA (3.2) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 21367867
    172963 4v82:BB (3.2) BS01 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172964 4v82:BB (3.2) BS02 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172965 4v82:BB (3.2) BS03 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172966 4v82:BB (3.2) BS04 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172967 4v82:BB (3.2) BS05 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172968 4v82:BB (3.2) BS06 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172969 4v82:BB (3.2) BS07 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172970 4v82:BB (3.2) BS08 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172971 4v82:BB (3.2) BS09 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172972 4v82:BB (3.2) BS10 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172973 4v82:BB (3.2) BS11 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172974 4v82:BB (3.2) BS12 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172975 4v82:BB (3.2) BS13 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172976 4v82:BB (3.2) BS14 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172977 4v82:BB (3.2) BS15 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172978 4v82:BB (3.2) BS16 CLA ? GO:0009521 ... Q8DIQ1 21367867
    172979 4v82:BC (3.2) BS01 CLA ? GO:0005737 ... Q8DIF8 21367867
    172980 4v82:BC (3.2) BS02 CLA ? GO:0005737 ... Q8DIF8 21367867
    172981 4v82:BC (3.2) BS03 CLA ? GO:0005737 ... Q8DIF8 21367867
    172982 4v82:BC (3.2) BS04 CLA ? GO:0005737 ... Q8DIF8 21367867
    172983 4v82:BC (3.2) BS05 CLA ? GO:0005737 ... Q8DIF8 21367867
    172984 4v82:BC (3.2) BS06 CLA ? GO:0005737 ... Q8DIF8 21367867
    172985 4v82:BC (3.2) BS07 CLA ? GO:0005737 ... Q8DIF8 21367867
    172986 4v82:BC (3.2) BS08 CLA ? GO:0005737 ... Q8DIF8 21367867
    172987 4v82:BC (3.2) BS09 CLA ? GO:0005737 ... Q8DIF8 21367867
    172988 4v82:BC (3.2) BS10 CLA ? GO:0005737 ... Q8DIF8 21367867
    172989 4v82:BC (3.2) BS11 CLA ? GO:0005737 ... Q8DIF8 21367867
    172990 4v82:BC (3.2) BS12 CLA ? GO:0005737 ... Q8DIF8 21367867
    172991 4v82:BC (3.2) BS13 CLA ? GO:0005737 ... Q8DIF8 21367867
    172992 4v82:BD (3.2) BS01 BCT 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    172993 4v82:BD (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    172994 4v82:BD (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    172995 4v82:BD (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    172996 4v82:BD (3.2) BS05 FE2 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    172997 4v82:BD (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    172998 4v82:BD (3.2) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    172999 4v82:BD (3.2) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    173000 4v82:BD (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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