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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    166801 4v61:BG (9.4) BS01 rna ? GO:0003735 ... O49937 18042701
    166802 4v61:BH (9.4) BS01 rna ? GO:0003735 ... P82192 18042701
    166803 4v61:BH (9.4) BS02 rna ? GO:0003735 ... P82192 18042701
    166804 4v61:BI (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    166805 4v61:BJ (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    166806 4v61:BK (9.4) BS01 rna ? GO:0003735 ... P31164 18042701
    166807 4v61:BL (9.4) BS01 rna ? GO:0003729 ... P12629 18042701
    166808 4v61:BM (9.4) BS01 rna ? GO:0003735 ... P09596 18042701
    166809 4v61:BN (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    166810 4v61:BO (9.4) BS01 rna ? GO:0003735 ... P17353 18042701
    166811 4v61:BO (9.4) BS02 rna ? GO:0003735 ... P17353 18042701
    166812 4v61:BP (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    166813 4v61:BP (9.4) BS02 rna N/A GO:0003735 ... N/A 18042701
    166814 4v61:BQ (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    166815 4v61:BQ (9.4) BS02 rna N/A GO:0003735 ... N/A 18042701
    166816 4v61:BR (9.4) BS01 rna ? GO:0003735 ... P82413 18042701
    166817 4v61:BR (9.4) BS02 rna ? GO:0003735 ... P82413 18042701
    166818 4v61:BR (9.4) BS03 rna ? GO:0003735 ... P82413 18042701
    166819 4v61:BS (9.4) BS01 rna ? GO:0000027 ... P28803 18042701
    166820 4v61:BT (9.4) BS01 rna ? GO:0003723 ... P24613 18042701
    166821 4v61:BU (9.4) BS01 rna ? GO:0003735 ... P09594 18042701
    166822 4v61:BV (9.4) BS01 rna ? GO:0000027 ... Q9LWB5 18042701
    166823 4v61:BW (9.4) BS01 rna ? GO:0003723 ... P27683 18042701
    166824 4v61:BX (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    166825 4v61:BY (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    166826 4v61:BZ (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    166827 4v62:AA (2.9) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 19219048
    166828 4v62:AA (2.9) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    166829 4v62:AA (2.9) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    166830 4v62:AA (2.9) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    166831 4v62:AA (2.9) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 19219048
    166832 4v62:AA (2.9) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    166833 4v62:AA (2.9) BS07 OEC 1.10.3.9 GO:0005506 ... P0A444 19219048
    166834 4v62:AA (2.9) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    166835 4v62:AA (2.9) BS09 BCT 1.10.3.9 GO:0005506 ... P0A444 19219048
    166836 4v62:AA (2.9) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 19219048
    166837 4v62:AB (2.9) BS01 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166838 4v62:AB (2.9) BS02 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166839 4v62:AB (2.9) BS03 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166840 4v62:AB (2.9) BS04 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166841 4v62:AB (2.9) BS05 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166842 4v62:AB (2.9) BS06 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166843 4v62:AB (2.9) BS07 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166844 4v62:AB (2.9) BS08 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166845 4v62:AB (2.9) BS09 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166846 4v62:AB (2.9) BS10 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166847 4v62:AB (2.9) BS11 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166848 4v62:AB (2.9) BS12 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166849 4v62:AB (2.9) BS13 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166850 4v62:AB (2.9) BS14 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166851 4v62:AB (2.9) BS15 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166852 4v62:AB (2.9) BS16 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166853 4v62:AC (2.9) BS01 CLA ? GO:0005737 ... Q8DIF8 19219048
    166854 4v62:AC (2.9) BS02 CLA ? GO:0005737 ... Q8DIF8 19219048
    166855 4v62:AC (2.9) BS03 CLA ? GO:0005737 ... Q8DIF8 19219048
    166856 4v62:AC (2.9) BS04 CLA ? GO:0005737 ... Q8DIF8 19219048
    166857 4v62:AC (2.9) BS05 CLA ? GO:0005737 ... Q8DIF8 19219048
    166858 4v62:AC (2.9) BS06 CLA ? GO:0005737 ... Q8DIF8 19219048
    166859 4v62:AC (2.9) BS07 CLA ? GO:0005737 ... Q8DIF8 19219048
    166860 4v62:AC (2.9) BS08 CLA ? GO:0005737 ... Q8DIF8 19219048
    166861 4v62:AC (2.9) BS09 CLA ? GO:0005737 ... Q8DIF8 19219048
    166862 4v62:AC (2.9) BS10 CLA ? GO:0005737 ... Q8DIF8 19219048
    166863 4v62:AC (2.9) BS11 CLA ? GO:0005737 ... Q8DIF8 19219048
    166864 4v62:AC (2.9) BS12 CLA ? GO:0005737 ... Q8DIF8 19219048
    166865 4v62:AC (2.9) BS13 CLA ? GO:0005737 ... Q8DIF8 19219048
    166866 4v62:AD (2.9) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166867 4v62:AD (2.9) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166868 4v62:AD (2.9) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166869 4v62:AD (2.9) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166870 4v62:AD (2.9) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166871 4v62:AD (2.9) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166872 4v62:AD (2.9) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166873 4v62:AD (2.9) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166874 4v62:AD (2.9) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166875 4v62:AE (2.9) BS01 peptide ? GO:0005506 ... Q8DIP0 19219048
    166876 4v62:AE (2.9) BS02 HEM ? GO:0005506 ... Q8DIP0 19219048
    166877 4v62:AF (2.9) BS01 HEM ? GO:0005506 ... Q8DIN9 19219048
    166878 4v62:AH (2.9) BS01 CLA ? GO:0009523 ... Q8DJ43 19219048
    166879 4v62:AH (2.9) BS02 CLA ? GO:0009523 ... Q8DJ43 19219048
    166880 4v62:AH (2.9) BS03 CLA ? GO:0009523 ... Q8DJ43 19219048
    166881 4v62:AH (2.9) BS04 CLA ? GO:0009523 ... Q8DJ43 19219048
    166882 4v62:AI (2.9) BS01 CLA ? GO:0005737 ... Q8DJZ6 19219048
    166883 4v62:AK (2.9) BS01 peptide ? GO:0009523 ... Q9F1K9 19219048
    166884 4v62:AK (2.9) BS02 CLA ? GO:0009523 ... Q9F1K9 19219048
    166885 4v62:AK (2.9) BS03 CLA ? GO:0009523 ... Q9F1K9 19219048
    166886 4v62:AK (2.9) BS04 CA ? GO:0009523 ... Q9F1K9 19219048
    166887 4v62:AO (2.9) BS01 CA ? GO:0009654 ... P0A431 19219048
    166888 4v62:AV (2.9) BS01 HEM ? GO:0005506 ... P0A386 19219048
    166889 4v62:AX (2.9) BS01 CLA ? GO:0009523 ... Q9F1R6 19219048
    166890 4v62:AZ (2.9) BS01 peptide ? GO:0009523 ... Q8DHJ2 19219048
    166891 4v62:AZ (2.9) BS02 CLA ? GO:0009523 ... Q8DHJ2 19219048
    166892 4v62:BA (2.9) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 19219048
    166893 4v62:BA (2.9) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    166894 4v62:BA (2.9) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    166895 4v62:BA (2.9) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    166896 4v62:BA (2.9) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 19219048
    166897 4v62:BA (2.9) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    166898 4v62:BA (2.9) BS07 OEC 1.10.3.9 GO:0005506 ... P0A444 19219048
    166899 4v62:BA (2.9) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    166900 4v62:BA (2.9) BS09 BCT 1.10.3.9 GO:0005506 ... P0A444 19219048
    166901 4v62:BA (2.9) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 19219048
    166902 4v62:BB (2.9) BS01 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166903 4v62:BB (2.9) BS02 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166904 4v62:BB (2.9) BS03 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166905 4v62:BB (2.9) BS04 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166906 4v62:BB (2.9) BS05 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166907 4v62:BB (2.9) BS06 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166908 4v62:BB (2.9) BS07 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166909 4v62:BB (2.9) BS08 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166910 4v62:BB (2.9) BS09 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166911 4v62:BB (2.9) BS10 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166912 4v62:BB (2.9) BS11 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166913 4v62:BB (2.9) BS12 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166914 4v62:BB (2.9) BS13 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166915 4v62:BB (2.9) BS14 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166916 4v62:BB (2.9) BS15 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166917 4v62:BB (2.9) BS16 CLA ? GO:0009521 ... Q8DIQ1 19219048
    166918 4v62:BC (2.9) BS01 CLA ? GO:0005737 ... Q8DIF8 19219048
    166919 4v62:BC (2.9) BS02 CLA ? GO:0005737 ... Q8DIF8 19219048
    166920 4v62:BC (2.9) BS03 CLA ? GO:0005737 ... Q8DIF8 19219048
    166921 4v62:BC (2.9) BS04 CLA ? GO:0005737 ... Q8DIF8 19219048
    166922 4v62:BC (2.9) BS05 CLA ? GO:0005737 ... Q8DIF8 19219048
    166923 4v62:BC (2.9) BS06 CLA ? GO:0005737 ... Q8DIF8 19219048
    166924 4v62:BC (2.9) BS07 CLA ? GO:0005737 ... Q8DIF8 19219048
    166925 4v62:BC (2.9) BS08 CLA ? GO:0005737 ... Q8DIF8 19219048
    166926 4v62:BC (2.9) BS09 CLA ? GO:0005737 ... Q8DIF8 19219048
    166927 4v62:BC (2.9) BS10 CLA ? GO:0005737 ... Q8DIF8 19219048
    166928 4v62:BC (2.9) BS11 CLA ? GO:0005737 ... Q8DIF8 19219048
    166929 4v62:BC (2.9) BS12 CLA ? GO:0005737 ... Q8DIF8 19219048
    166930 4v62:BC (2.9) BS13 CLA ? GO:0005737 ... Q8DIF8 19219048
    166931 4v62:BD (2.9) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166932 4v62:BD (2.9) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166933 4v62:BD (2.9) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166934 4v62:BD (2.9) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166935 4v62:BD (2.9) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166936 4v62:BD (2.9) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166937 4v62:BD (2.9) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166938 4v62:BD (2.9) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166939 4v62:BD (2.9) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    166940 4v62:BE (2.9) BS01 peptide ? GO:0005506 ... Q8DIP0 19219048
    166941 4v62:BE (2.9) BS02 HEM ? GO:0005506 ... Q8DIP0 19219048
    166942 4v62:BF (2.9) BS01 HEM ? GO:0005506 ... Q8DIN9 19219048
    166943 4v62:BH (2.9) BS01 CLA ? GO:0009523 ... Q8DJ43 19219048
    166944 4v62:BH (2.9) BS02 CLA ? GO:0009523 ... Q8DJ43 19219048
    166945 4v62:BH (2.9) BS03 CLA ? GO:0009523 ... Q8DJ43 19219048
    166946 4v62:BH (2.9) BS04 CLA ? GO:0009523 ... Q8DJ43 19219048
    166947 4v62:BI (2.9) BS01 CLA ? GO:0005737 ... Q8DJZ6 19219048
    166948 4v62:BK (2.9) BS01 peptide ? GO:0009523 ... Q9F1K9 19219048
    166949 4v62:BK (2.9) BS02 CLA ? GO:0009523 ... Q9F1K9 19219048
    166950 4v62:BK (2.9) BS03 CLA ? GO:0009523 ... Q9F1K9 19219048
    166951 4v62:BK (2.9) BS04 CA ? GO:0009523 ... Q9F1K9 19219048
    166952 4v62:BO (2.9) BS01 CA ? GO:0009654 ... P0A431 19219048
    166953 4v62:BV (2.9) BS01 HEM ? GO:0005506 ... P0A386 19219048
    166954 4v62:BX (2.9) BS01 CLA ? GO:0009523 ... Q9F1R6 19219048
    166955 4v62:BZ (2.9) BS01 peptide ? GO:0009523 ... Q8DHJ2 19219048
    166956 4v62:BZ (2.9) BS02 CLA ? GO:0009523 ... Q8DHJ2 19219048
    166957 4v63:AB (3.207) BS01 rna ? GO:0003735 ... P62662 18596689
    166958 4v63:AC (3.207) BS01 rna ? GO:0003676 ... P62663 18596689
    166959 4v63:AC (3.207) BS02 MG ? GO:0003676 ... P62663 18596689
    166960 4v63:AC (3.207) BS03 MG ? GO:0003676 ... P62663 18596689
    166961 4v63:AD (3.207) BS01 rna ? GO:0003723 ... P62664 18596689
    166962 4v63:AD (3.207) BS02 MG ? GO:0003723 ... P62664 18596689
    166963 4v63:AE (3.207) BS01 rna ? GO:0003723 ... P62665 18596689
    166964 4v63:AF (3.207) BS01 rna ? GO:0003735 ... P62666 18596689
    166965 4v63:AG (3.207) BS01 rna ? GO:0000028 ... P62667 18596689
    166966 4v63:AG (3.207) BS02 rna ? GO:0000028 ... P62667 18596689
    166967 4v63:AH (3.207) BS01 rna ? GO:0003735 ... P62668 18596689
    166968 4v63:AH (3.207) BS02 MG ? GO:0003735 ... P62668 18596689
    166969 4v63:AI (3.207) BS01 rna ? GO:0000049 ... P62669 18596689
    166970 4v63:AI (3.207) BS02 rna ? GO:0000049 ... P62669 18596689
    166971 4v63:AJ (3.207) BS01 rna ? GO:0000049 ... P62653 18596689
    166972 4v63:AK (3.207) BS01 rna ? GO:0003735 ... P62654 18596689
    166973 4v63:AK (3.207) BS02 rna ? GO:0003735 ... P62654 18596689
    166974 4v63:AL (3.207) BS01 rna ? GO:0000049 ... P61941 18596689
    166975 4v63:AM (3.207) BS01 rna ? GO:0000049 ... P62655 18596689
    166976 4v63:AM (3.207) BS02 MG ? GO:0000049 ... P62655 18596689
    166977 4v63:AN (3.207) BS01 rna ? GO:0003735 ... P62656 18596689
    166978 4v63:AO (3.207) BS01 rna ? GO:0003735 ... P62657 18596689
    166979 4v63:AO (3.207) BS02 rna ? GO:0003735 ... P62657 18596689
    166980 4v63:AP (3.207) BS01 rna ? GO:0003735 ... P62238 18596689
    166981 4v63:AQ (3.207) BS01 rna ? GO:0003735 ... P62658 18596689
    166982 4v63:AR (3.207) BS01 rna ? GO:0003735 ... P62659 18596689
    166983 4v63:AS (3.207) BS01 rna ? GO:0000028 ... P62660 18596689
    166984 4v63:AT (3.207) BS01 rna ? GO:0003723 ... P62661 18596689
    166985 4v63:AX (3.207) BS01 rna ? GO:0003747 ... Q72HB8 18596689
    166986 4v63:AX (3.207) BS02 rna ? GO:0003747 ... Q72HB8 18596689
    166987 4v63:AX (3.207) BS03 rna ? GO:0003747 ... Q72HB8 18596689
    166988 4v63:AX (3.207) BS04 rna ? GO:0003747 ... Q72HB8 18596689
    166989 4v63:AX (3.207) BS05 MG ? GO:0003747 ... Q72HB8 18596689
    166990 4v63:AX (3.207) BS06 MG ? GO:0003747 ... Q72HB8 18596689
    166991 4v63:AX (3.207) BS07 MG ? GO:0003747 ... Q72HB8 18596689
    166992 4v63:AX (3.207) BS08 MG ? GO:0003747 ... Q72HB8 18596689
    166993 4v63:B0 (3.207) BS01 rna ? GO:0003735 ... Q72HR3 18596689
    166994 4v63:B0 (3.207) BS02 rna ? GO:0003735 ... Q72HR3 18596689
    166995 4v63:B1 (3.207) BS01 rna ? GO:0003735 ... Q72G84 18596689
    166996 4v63:B2 (3.207) BS01 rna ? GO:0003735 ... Q72I12 18596689
    166997 4v63:B2 (3.207) BS02 MG ? GO:0003735 ... Q72I12 18596689
    166998 4v63:B3 (3.207) BS01 rna ? GO:0003735 ... Q72I22 18596689
    166999 4v63:B5 (3.207) BS01 rna ? GO:0003735 ... P62652 18596689
    167000 4v63:B6 (3.207) BS01 rna ? GO:0003735 ... Q72GW3 18596689
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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