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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    161201 4uym:B (2.55) BS01 HEM 1.14.14.154 GO:0004497 ... E9QY26 26269599
    161202 4uym:B (2.55) BS02 VOR 1.14.14.154 GO:0004497 ... E9QY26 26269599
    161203 4uyo:A (2.18) BS01 79N 2.7.1.107 GO:0004143 ... P0ABN1 26673816
    161204 4uyo:B (2.18) BS01 79M 2.7.1.107 GO:0004143 ... P0ABN1 26673816
    161205 4uyo:B (2.18) BS02 79N 2.7.1.107 GO:0004143 ... P0ABN1 26673816
    161206 4uyo:B (2.18) BS03 79N 2.7.1.107 GO:0004143 ... P0ABN1 26673816
    161207 4uyo:C (2.18) BS01 79N 2.7.1.107 GO:0004143 ... P0ABN1 26673816
    161208 4uyo:D (2.18) BS01 79M 2.7.1.107 GO:0004143 ... P0ABN1 26673816
    161209 4uyo:D (2.18) BS02 79M 2.7.1.107 GO:0004143 ... P0ABN1 26673816
    161210 4uyo:D (2.18) BS03 ZN 2.7.1.107 GO:0004143 ... P0ABN1 26673816
    161211 4uyo:D (2.18) BS04 79N 2.7.1.107 GO:0004143 ... P0ABN1 26673816
    161212 4uyo:F (2.18) BS01 79M 2.7.1.107 GO:0004143 ... P0ABN1 26673816
    161213 4uzb:A (2.865) BS01 dna ? GO:0003677 ... Q9QR71 25947153 PDBbind: Kd=72nM
    161214 4uzb:A (2.865) BS02 dna ? GO:0003677 ... Q9QR71 25947153 PDBbind: Kd=72nM
    161215 4uzb:B (2.865) BS01 dna ? GO:0003677 ... Q9QR71 25947153 PDBbind: Kd=72nM
    161216 4uzb:B (2.865) BS02 dna ? GO:0003677 ... Q9QR71 25947153 PDBbind: Kd=72nM
    161217 4uzi:A (2.1) BS01 HEM 1.11.1.19
    1.11.1.7    		 GO:0004601 ... I2DBY1 25542606
    161218 4uzi:A (2.1) BS02 IMD 1.11.1.19
    1.11.1.7    		 GO:0004601 ... I2DBY1 25542606 MOAD: Ki=5.78mM
    161219 4uzi:A (2.1) BS03 IMD 1.11.1.19
    1.11.1.7    		 GO:0004601 ... I2DBY1 25542606 MOAD: Ki=5.78mM
    161220 4uzi:A (2.1) BS04 EPE 1.11.1.19
    1.11.1.7    		 GO:0004601 ... I2DBY1 25542606
    161221 4uzi:A (2.1) BS05 OXD 1.11.1.19
    1.11.1.7    		 GO:0004601 ... I2DBY1 25542606
    161222 4uzi:B (2.1) BS01 HEM 1.11.1.19
    1.11.1.7    		 GO:0004601 ... I2DBY1 25542606
    161223 4uzi:B (2.1) BS02 IMD 1.11.1.19
    1.11.1.7    		 GO:0004601 ... I2DBY1 25542606 MOAD: Ki=5.78mM
    161224 4uzi:B (2.1) BS03 IMD 1.11.1.19
    1.11.1.7    		 GO:0004601 ... I2DBY1 25542606 MOAD: Ki=5.78mM
    161225 4uzs:A (1.74) BS01 POL N/A GO:0004565 ... N/A 27685756
    161226 4uzs:A (1.74) BS02 POL N/A GO:0004565 ... N/A 27685756
    161227 4uzs:A (1.74) BS03 POL N/A GO:0004565 ... N/A 27685756
    161228 4uzs:B (1.74) BS01 POL N/A GO:0004565 ... N/A 27685756
    161229 4uzu:A (1.9) BS01 GLY 3.2.1.1 GO:0004553 ... P06279 25615972
    161230 4uzu:A (1.9) BS02 CA 3.2.1.1 GO:0004553 ... P06279 25615972
    161231 4uzu:A (1.9) BS03 CA 3.2.1.1 GO:0004553 ... P06279 25615972
    161232 4uzu:A (1.9) BS04 CA 3.2.1.1 GO:0004553 ... P06279 25615972
    161233 4v02:A (2.7) BS01 ATP ? GO:0005524 ... O67033 25500731
    161234 4v02:B (2.7) BS01 ATP ? GO:0005524 ... O67033 25500731
    161235 4v03:A (1.9) BS01 ADP ? GO:0005524 ... O67033 25500731
    161236 4v03:B (1.9) BS01 ADP ? GO:0005524 ... O67033 25500731
    161237 4v0c:C (2.86) BS01 CA ? GO:0000086 ... P0DP23 25441029
    161238 4v0c:C (2.86) BS02 CA ? GO:0000086 ... P0DP23 25441029
    161239 4v0c:D (2.86) BS01 CA ? GO:0000086 ... P0DP23 25441029
    161240 4v0c:D (2.86) BS02 CA ? GO:0000086 ... P0DP23 25441029
    161241 4v0h:A (1.79) BS01 FE 3.1.27.- GO:0004521 ... A4D2B0 30507380
    161242 4v0h:A (1.79) BS02 FE 3.1.27.- GO:0004521 ... A4D2B0 30507380
    161243 4v0h:B (1.79) BS01 FE 3.1.27.- GO:0004521 ... A4D2B0 30507380
    161244 4v0h:B (1.79) BS02 FE 3.1.27.- GO:0004521 ... A4D2B0 30507380
    161245 4v0h:C (1.79) BS01 FE 3.1.27.- GO:0004521 ... A4D2B0 30507380
    161246 4v0h:C (1.79) BS02 FE 3.1.27.- GO:0004521 ... A4D2B0 30507380
    161247 4v0h:D (1.79) BS01 FE 3.1.27.- GO:0004521 ... A4D2B0 30507380
    161248 4v0h:D (1.79) BS02 FE 3.1.27.- GO:0004521 ... A4D2B0 30507380
    161249 4v0k:A (1.438) BS01 GDP ? GO:0003924 ... A8JF99 25402481
    161250 4v0k:B (1.438) BS01 GDP ? GO:0003924 ... A8JF99 25402481
    161251 4v0l:A (2.197) BS01 GTP ? GO:0003924 ... A8JF99 25402481
    161252 4v0l:A (2.197) BS02 MG ? GO:0003924 ... A8JF99 25402481
    161253 4v0l:B (2.197) BS01 GTP ? GO:0003924 ... A8JF99 25402481
    161254 4v0l:B (2.197) BS02 MG ? GO:0003924 ... A8JF99 25402481
    161255 4v0m:A (3.45) BS01 GTP ? GO:0003924 ... A8JF99 25402481
    161256 4v0m:A (3.45) BS02 MG ? GO:0003924 ... A8JF99 25402481
    161257 4v0m:C (3.45) BS01 GTP ? GO:0003924 ... A8JF99 25402481
    161258 4v0m:C (3.45) BS02 MG ? GO:0003924 ... A8JF99 25402481
    161259 4v0m:E (3.45) BS01 GTP ? GO:0003924 ... A8JF99 25402481
    161260 4v0m:E (3.45) BS02 MG ? GO:0003924 ... A8JF99 25402481
    161261 4v0m:G (3.45) BS01 GTP ? GO:0003924 ... A8JF99 25402481
    161262 4v0m:G (3.45) BS02 MG ? GO:0003924 ... A8JF99 25402481
    161263 4v0n:A (3.131) BS01 GTP ? GO:0003924 ... A8JF99 25402481
    161264 4v0n:A (3.131) BS02 MG ? GO:0003924 ... A8JF99 25402481
    161265 4v0n:C (3.131) BS01 GTP ? GO:0003924 ... A8JF99 25402481
    161266 4v0n:C (3.131) BS02 MG ? GO:0003924 ... A8JF99 25402481
    161267 4v0n:E (3.131) BS01 GTP ? GO:0003924 ... A8JF99 25402481
    161268 4v0n:E (3.131) BS02 MG ? GO:0003924 ... A8JF99 25402481
    161269 4v0n:G (3.131) BS01 GTP ? GO:0003924 ... A8JF99 25402481
    161270 4v0n:G (3.131) BS02 MG ? GO:0003924 ... A8JF99 25402481
    161271 4v0o:A (3.351) BS01 GTP ? GO:0003924 ... A8JF99 25402481
    161272 4v0o:A (3.351) BS02 MG ? GO:0003924 ... A8JF99 25402481
    161273 4v0o:C (3.351) BS01 GTP ? GO:0003924 ... A8JF99 25402481
    161274 4v0o:C (3.351) BS02 MG ? GO:0003924 ... A8JF99 25402481
    161275 4v0o:E (3.351) BS01 GTP ? GO:0003924 ... A8JF99 25402481
    161276 4v0o:E (3.351) BS02 MG ? GO:0003924 ... A8JF99 25402481
    161277 4v0o:G (3.351) BS01 GTP ? GO:0003924 ... A8JF99 25402481
    161278 4v0o:G (3.351) BS02 MG ? GO:0003924 ... A8JF99 25402481
    161279 4v0s:A (1.55) BS01 2HN 4.2.1.10 GO:0003855 ... P9WPX7 N/A
    161280 4v0s:A (1.55) BS02 2HN 4.2.1.10 GO:0003855 ... P9WPX7 N/A
    161281 4v0s:A (1.55) BS03 7HN 4.2.1.10 GO:0003855 ... P9WPX7 N/A
    161282 4v0s:B (1.55) BS01 2HN 4.2.1.10 GO:0003855 ... P9WPX7 N/A
    161283 4v0u:A (7.88) BS01 LAB 3.6.4.- GO:0000287 ... P68135 25774600 BindingDB: IC50=8470nM
    161284 4v0u:A (7.88) BS02 ATP 3.6.4.- GO:0000287 ... P68135 25774600
    161285 4v0u:B (7.88) BS01 LAB 3.6.4.- GO:0000287 ... P68135 25774600 BindingDB: IC50=8470nM
    161286 4v0u:B (7.88) BS02 ATP 3.6.4.- GO:0000287 ... P68135 25774600
    161287 4v0u:C (7.88) BS01 LAB 3.6.4.- GO:0000287 ... P68135 25774600 BindingDB: IC50=8470nM
    161288 4v0u:C (7.88) BS02 ATP 3.6.4.- GO:0000287 ... P68135 25774600
    161289 4v0u:D (7.88) BS01 peptide 3.1.3.16 GO:0000775 ... P63087 25774600
    161290 4v0u:D (7.88) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161291 4v0u:D (7.88) BS03 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161292 4v0u:F (7.88) BS01 peptide 3.1.3.16 GO:0000775 ... P63087 25774600
    161293 4v0u:F (7.88) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161294 4v0u:F (7.88) BS03 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161295 4v0u:H (7.88) BS01 peptide 3.1.3.16 GO:0000775 ... P63087 25774600
    161296 4v0u:H (7.88) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161297 4v0u:H (7.88) BS03 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161298 4v0u:J (7.88) BS01 peptide 3.1.3.16 GO:0000775 ... P63087 25774600
    161299 4v0u:J (7.88) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161300 4v0u:J (7.88) BS03 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161301 4v0u:L (7.88) BS01 LAB 3.6.4.- GO:0000287 ... P68135 25774600 BindingDB: IC50=8470nM
    161302 4v0u:L (7.88) BS02 ATP 3.6.4.- GO:0000287 ... P68135 25774600
    161303 4v0u:M (7.88) BS01 LAB 3.6.4.- GO:0000287 ... P68135 25774600 BindingDB: IC50=8470nM
    161304 4v0u:M (7.88) BS02 ATP 3.6.4.- GO:0000287 ... P68135 25774600
    161305 4v0u:N (7.88) BS01 peptide 3.1.3.16 GO:0000775 ... P63087 25774600
    161306 4v0u:N (7.88) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161307 4v0u:N (7.88) BS03 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161308 4v0v:A (1.61) BS01 peptide 3.1.3.16 GO:0000775 ... P63087 25774600
    161309 4v0v:A (1.61) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161310 4v0v:C (1.61) BS01 peptide 3.1.3.16 GO:0000775 ... P63087 25774600
    161311 4v0v:C (1.61) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161312 4v0w:A (1.55) BS01 peptide 3.1.3.16 GO:0000775 ... P63087 25774600
    161313 4v0w:A (1.55) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161314 4v0w:A (1.55) BS03 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161315 4v0w:C (1.55) BS01 peptide 3.1.3.16 GO:0000775 ... P63087 25774600
    161316 4v0w:C (1.55) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161317 4v0w:C (1.55) BS03 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161318 4v0x:A (1.85) BS01 peptide 3.1.3.16 GO:0000775 ... P63087 25774600
    161319 4v0x:A (1.85) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    161320 4v11:A (1.95) BS01 peptide ? GO:0016020 ... P21579 25673844
    161321 4v11:A (1.95) BS02 CA ? GO:0016020 ... P21579 25673844
    161322 4v11:A (1.95) BS03 CA ? GO:0016020 ... P21579 25673844
    161323 4v11:A (1.95) BS04 CA ? GO:0016020 ... P21579 25673844
    161324 4v19:0 (3.4) BS01 rna ? GO:0003735 ... A0A4X1U0F6 25271403
    161325 4v19:2 (3.4) BS01 rna ? GO:0003735 ... F1SGC7 25271403
    161326 4v19:3 (3.4) BS01 rna ? GO:0003735 ... A0A8D1MIP3 25271403
    161327 4v19:4 (3.4) BS01 rna N/A GO:0003735 ... N/A 25271403
    161328 4v19:5 (3.4) BS01 rna ? GO:0003735 ... I3LTC4 25271403
    161329 4v19:5 (3.4) BS02 ZN ? GO:0003735 ... I3LTC4 25271403
    161330 4v19:6 (3.4) BS01 rna N/A GO:0003735 ... N/A 25271403
    161331 4v19:7 (3.4) BS01 rna ? GO:0003735 ... W5IDC1 25271403
    161332 4v19:8 (3.4) BS01 rna ? GO:0003735 ... F1SVC5 25271403
    161333 4v19:9 (3.4) BS01 rna N/A GO:0003735 ... N/A 25271403
    161334 4v19:9 (3.4) BS02 ZN N/A GO:0003735 ... N/A 25271403
    161335 4v19:D (3.4) BS01 rna ? GO:0003735 ... F1RRN2 25271403
    161336 4v19:E (3.4) BS01 rna N/A GO:0003735 ... N/A 25271403
    161337 4v19:F (3.4) BS01 rna N/A GO:0003735 ... N/A 25271403
    161338 4v19:I (3.4) BS01 rna ? GO:0003735 ... I3LR45 25271403
    161339 4v19:J (3.4) BS01 rna ? GO:0005840 ... F1RWJ0 25271403
    161340 4v19:K (3.4) BS01 rna ? GO:0003735 ... F1RU54 25271403
    161341 4v19:N (3.4) BS01 rna N/A GO:0003735 ... N/A 25271403
    161342 4v19:O (3.4) BS01 rna ? GO:0003735 ... F1RQV7 25271403
    161343 4v19:P (3.4) BS01 rna N/A GO:0003735 ... N/A 25271403
    161344 4v19:Q (3.4) BS01 rna ? GO:0003735 ... F1RI89 25271403
    161345 4v19:R (3.4) BS01 rna ? GO:0003735 ... F1RMQ4 25271403
    161346 4v19:S (3.4) BS01 rna ? GO:0003735 ... A0A0R4J8D5 25271403
    161347 4v19:S (3.4) BS02 rna ? GO:0003735 ... A0A0R4J8D5 25271403
    161348 4v19:T (3.4) BS01 rna ? GO:0003735 ... I3LNJ0 25271403
    161349 4v19:U (3.4) BS01 rna N/A GO:0003735 ... N/A 25271403
    161350 4v19:V (3.4) BS01 rna ? GO:0003723 ... F1RY70 25271403
    161351 4v19:W (3.4) BS01 rna N/A GO:0003735 ... N/A 25271403
    161352 4v19:X (3.4) BS01 rna N/A GO:0003735 ... N/A 25271403
    161353 4v19:X (3.4) BS02 MG N/A GO:0003735 ... N/A 25271403
    161354 4v19:Y (3.4) BS01 rna ? GO:0003723 ... F1RHJ1 25271403
    161355 4v1a:x (3.4) BS01 ZN ? GO:0003735 ... F1RRH6 25271403
    161356 4v1f:A (1.697) BS01 BQ1 N/A GO:0015078 ... N/A 26601184 PDBbind: -logKd/Ki=7.70, IC50~20nM
    161357 4v1f:A (1.697) BS02 BQ1 N/A GO:0015078 ... N/A 26601184 PDBbind: -logKd/Ki=7.70, IC50~20nM
    161358 4v1f:B (1.697) BS01 BQ1 N/A GO:0015078 ... N/A 26601184
    161359 4v1f:C (1.697) BS01 BQ1 N/A GO:0015078 ... N/A 26601184
    161360 4v1h:A (1.8) BS01 IBQ N/A GO:0015078 ... N/A N/A
    161361 4v1h:A (1.8) BS02 IBQ N/A GO:0015078 ... N/A N/A
    161362 4v1h:B (1.8) BS01 IBQ N/A GO:0015078 ... N/A N/A
    161363 4v1h:C (1.8) BS01 IBQ N/A GO:0015078 ... N/A N/A
    161364 4v1m:A (6.6) BS01 rna 2.7.7.6 GO:0000428 ... P04050 25652824
    161365 4v1m:A (6.6) BS02 dna 2.7.7.6 GO:0000428 ... P04050 25652824
    161366 4v1m:A (6.6) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 25652824
    161367 4v1m:A (6.6) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 25652824
    161368 4v1m:A (6.6) BS05 MG 2.7.7.6 GO:0000428 ... P04050 25652824
    161369 4v1m:B (6.6) BS01 rna 2.7.7.6 GO:0000428 ... P08518 25652824
    161370 4v1m:B (6.6) BS02 dna 2.7.7.6 GO:0000428 ... P08518 25652824
    161371 4v1m:B (6.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 25652824
    161372 4v1m:C (6.6) BS01 ZN ? GO:0000428 ... P16370 25652824
    161373 4v1m:I (6.6) BS01 ZN ? GO:0000428 ... P27999 25652824
    161374 4v1m:I (6.6) BS02 ZN ? GO:0000428 ... P27999 25652824
    161375 4v1m:J (6.6) BS01 ZN ? GO:0000428 ... P22139 25652824
    161376 4v1m:L (6.6) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 25652824
    161377 4v1n:A (7.8) BS01 rna 2.7.7.6 GO:0000428 ... P04050 25652824
    161378 4v1n:A (7.8) BS02 dna 2.7.7.6 GO:0000428 ... P04050 25652824
    161379 4v1n:A (7.8) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 25652824
    161380 4v1n:A (7.8) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 25652824
    161381 4v1n:A (7.8) BS05 MG 2.7.7.6 GO:0000428 ... P04050 25652824
    161382 4v1n:B (7.8) BS01 rna 2.7.7.6 GO:0000428 ... P08518 25652824
    161383 4v1n:B (7.8) BS02 dna 2.7.7.6 GO:0000428 ... P08518 25652824
    161384 4v1n:B (7.8) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 25652824
    161385 4v1n:C (7.8) BS01 ZN ? GO:0000428 ... P16370 25652824
    161386 4v1n:I (7.8) BS01 ZN ? GO:0000428 ... P27999 25652824
    161387 4v1n:I (7.8) BS02 ZN ? GO:0000428 ... P27999 25652824
    161388 4v1n:J (7.8) BS01 ZN ? GO:0000428 ... P22139 25652824
    161389 4v1n:L (7.8) BS01 ZN ? GO:0000428 ... P40422 25652824
    161390 4v1n:M (7.8) BS01 dna ? GO:0000993 ... P29055 25652824
    161391 4v1n:M (7.8) BS02 dna ? GO:0000993 ... P29055 25652824
    161392 4v1n:M (7.8) BS03 ZN ? GO:0000993 ... P29055 25652824
    161393 4v1o:A (9.7) BS01 rna 2.7.7.6 GO:0000428 ... P04050 25652824
    161394 4v1o:A (9.7) BS02 dna 2.7.7.6 GO:0000428 ... P04050 25652824
    161395 4v1o:A (9.7) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 25652824
    161396 4v1o:A (9.7) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 25652824
    161397 4v1o:A (9.7) BS05 MG 2.7.7.6 GO:0000428 ... P04050 25652824
    161398 4v1o:B (9.7) BS01 rna 2.7.7.6 GO:0000428 ... P08518 25652824
    161399 4v1o:B (9.7) BS02 dna 2.7.7.6 GO:0000428 ... P08518 25652824
    161400 4v1o:B (9.7) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 25652824
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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