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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    151601 4tnj:B (4.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151602 4tnj:B (4.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151603 4tnj:B (4.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151604 4tnj:B (4.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151605 4tnj:B (4.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151606 4tnj:B (4.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151607 4tnj:B (4.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151608 4tnj:B (4.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151609 4tnj:C (4.5) BS01 CLA ? GO:0005737 ... Q8DIF8 25006873
    151610 4tnj:C (4.5) BS02 CLA ? GO:0005737 ... Q8DIF8 25006873
    151611 4tnj:C (4.5) BS03 CLA ? GO:0005737 ... Q8DIF8 25006873
    151612 4tnj:C (4.5) BS04 CLA ? GO:0005737 ... Q8DIF8 25006873
    151613 4tnj:C (4.5) BS05 CLA ? GO:0005737 ... Q8DIF8 25006873
    151614 4tnj:C (4.5) BS06 CLA ? GO:0005737 ... Q8DIF8 25006873
    151615 4tnj:C (4.5) BS07 CLA ? GO:0005737 ... Q8DIF8 25006873
    151616 4tnj:C (4.5) BS08 CLA ? GO:0005737 ... Q8DIF8 25006873
    151617 4tnj:C (4.5) BS09 CLA ? GO:0005737 ... Q8DIF8 25006873
    151618 4tnj:C (4.5) BS10 CLA ? GO:0005737 ... Q8DIF8 25006873
    151619 4tnj:C (4.5) BS11 CLA ? GO:0005737 ... Q8DIF8 25006873
    151620 4tnj:C (4.5) BS12 CLA ? GO:0005737 ... Q8DIF8 25006873
    151621 4tnj:C (4.5) BS13 CLA ? GO:0005737 ... Q8DIF8 25006873
    151622 4tnj:D (4.5) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151623 4tnj:D (4.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151624 4tnj:D (4.5) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151625 4tnj:D (4.5) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151626 4tnj:D (4.5) BS05 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151627 4tnj:D (4.5) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151628 4tnj:D (4.5) BS07 BCT 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151629 4tnj:D (4.5) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151630 4tnj:D (4.5) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151631 4tnj:E (4.5) BS01 peptide ? GO:0005506 ... Q8DIP0 25006873
    151632 4tnj:E (4.5) BS02 HEM ? GO:0005506 ... Q8DIP0 25006873
    151633 4tnj:F (4.5) BS01 HEM ? GO:0005506 ... Q8DIN9 25006873
    151634 4tnj:H (4.5) BS01 CLA ? GO:0009523 ... Q8DJ43 25006873
    151635 4tnj:H (4.5) BS02 CLA ? GO:0009523 ... Q8DJ43 25006873
    151636 4tnj:H (4.5) BS03 CLA ? GO:0009523 ... Q8DJ43 25006873
    151637 4tnj:I (4.5) BS01 CLA ? GO:0005737 ... Q8DJZ6 25006873
    151638 4tnj:K (4.5) BS01 peptide ? GO:0005737 ... Q9F1K9 25006873
    151639 4tnj:K (4.5) BS02 CLA ? GO:0005737 ... Q9F1K9 25006873
    151640 4tnj:K (4.5) BS03 CLA ? GO:0005737 ... Q9F1K9 25006873
    151641 4tnj:K (4.5) BS04 CA ? GO:0005737 ... Q9F1K9 25006873
    151642 4tnj:O (4.5) BS01 CA ? GO:0009654 ... P0A431 25006873
    151643 4tnj:V (4.5) BS01 HEM ? GO:0005506 ... P0A386 25006873
    151644 4tnj:Z (4.5) BS01 peptide ? GO:0009523 ... Q8DHJ2 25006873
    151645 4tnj:Z (4.5) BS02 CLA ? GO:0009523 ... Q8DHJ2 25006873
    151646 4tnj:a (4.5) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 25006873
    151647 4tnj:a (4.5) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    151648 4tnj:a (4.5) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    151649 4tnj:a (4.5) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    151650 4tnj:a (4.5) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 25006873
    151651 4tnj:a (4.5) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    151652 4tnj:a (4.5) BS07 OEX 1.10.3.9 GO:0005506 ... P0A444 25006873
    151653 4tnj:a (4.5) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    151654 4tnj:a (4.5) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 25006873
    151655 4tnj:a (4.5) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 25006873
    151656 4tnj:b (4.5) BS01 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151657 4tnj:b (4.5) BS02 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151658 4tnj:b (4.5) BS03 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151659 4tnj:b (4.5) BS04 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151660 4tnj:b (4.5) BS05 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151661 4tnj:b (4.5) BS06 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151662 4tnj:b (4.5) BS07 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151663 4tnj:b (4.5) BS08 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151664 4tnj:b (4.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151665 4tnj:b (4.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151666 4tnj:b (4.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151667 4tnj:b (4.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151668 4tnj:b (4.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151669 4tnj:b (4.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151670 4tnj:b (4.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151671 4tnj:b (4.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151672 4tnj:c (4.5) BS01 CLA ? GO:0005737 ... Q8DIF8 25006873
    151673 4tnj:c (4.5) BS02 CLA ? GO:0005737 ... Q8DIF8 25006873
    151674 4tnj:c (4.5) BS03 CLA ? GO:0005737 ... Q8DIF8 25006873
    151675 4tnj:c (4.5) BS04 CLA ? GO:0005737 ... Q8DIF8 25006873
    151676 4tnj:c (4.5) BS05 CLA ? GO:0005737 ... Q8DIF8 25006873
    151677 4tnj:c (4.5) BS06 CLA ? GO:0005737 ... Q8DIF8 25006873
    151678 4tnj:c (4.5) BS07 CLA ? GO:0005737 ... Q8DIF8 25006873
    151679 4tnj:c (4.5) BS08 CLA ? GO:0005737 ... Q8DIF8 25006873
    151680 4tnj:c (4.5) BS09 CLA ? GO:0005737 ... Q8DIF8 25006873
    151681 4tnj:c (4.5) BS10 CLA ? GO:0005737 ... Q8DIF8 25006873
    151682 4tnj:c (4.5) BS11 CLA ? GO:0005737 ... Q8DIF8 25006873
    151683 4tnj:c (4.5) BS12 CLA ? GO:0005737 ... Q8DIF8 25006873
    151684 4tnj:c (4.5) BS13 CLA ? GO:0005737 ... Q8DIF8 25006873
    151685 4tnj:d (4.5) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151686 4tnj:d (4.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151687 4tnj:d (4.5) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151688 4tnj:d (4.5) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151689 4tnj:d (4.5) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151690 4tnj:d (4.5) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151691 4tnj:d (4.5) BS07 BCT 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151692 4tnj:d (4.5) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151693 4tnj:d (4.5) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151694 4tnj:e (4.5) BS01 peptide ? GO:0005506 ... Q8DIP0 25006873
    151695 4tnj:e (4.5) BS02 HEM ? GO:0005506 ... Q8DIP0 25006873
    151696 4tnj:f (4.5) BS01 HEM ? GO:0005506 ... Q8DIN9 25006873
    151697 4tnj:h (4.5) BS01 CLA ? GO:0009523 ... Q8DJ43 25006873
    151698 4tnj:h (4.5) BS02 CLA ? GO:0009523 ... Q8DJ43 25006873
    151699 4tnj:h (4.5) BS03 CLA ? GO:0009523 ... Q8DJ43 25006873
    151700 4tnj:i (4.5) BS01 CLA ? GO:0005737 ... Q8DJZ6 25006873
    151701 4tnj:k (4.5) BS01 peptide ? GO:0005737 ... Q9F1K9 25006873
    151702 4tnj:k (4.5) BS02 CLA ? GO:0005737 ... Q9F1K9 25006873
    151703 4tnj:k (4.5) BS03 CLA ? GO:0005737 ... Q9F1K9 25006873
    151704 4tnj:k (4.5) BS04 CA ? GO:0005737 ... Q9F1K9 25006873
    151705 4tnj:o (4.5) BS01 CA ? GO:0009654 ... P0A431 25006873
    151706 4tnj:v (4.5) BS01 HEM ? GO:0005506 ... P0A386 25006873
    151707 4tnj:z (4.5) BS01 peptide ? GO:0009523 ... Q8DHJ2 25006873
    151708 4tnj:z (4.5) BS02 CLA ? GO:0009523 ... Q8DHJ2 25006873
    151709 4tnk:A (5.2) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 25006873
    151710 4tnk:A (5.2) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    151711 4tnk:A (5.2) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    151712 4tnk:A (5.2) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    151713 4tnk:A (5.2) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 25006873
    151714 4tnk:A (5.2) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    151715 4tnk:A (5.2) BS07 OEX 1.10.3.9 GO:0005506 ... P0A444 25006873
    151716 4tnk:A (5.2) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    151717 4tnk:A (5.2) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 25006873
    151718 4tnk:B (5.2) BS01 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151719 4tnk:B (5.2) BS02 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151720 4tnk:B (5.2) BS03 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151721 4tnk:B (5.2) BS04 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151722 4tnk:B (5.2) BS05 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151723 4tnk:B (5.2) BS06 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151724 4tnk:B (5.2) BS07 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151725 4tnk:B (5.2) BS08 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151726 4tnk:B (5.2) BS09 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151727 4tnk:B (5.2) BS10 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151728 4tnk:B (5.2) BS11 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151729 4tnk:B (5.2) BS12 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151730 4tnk:B (5.2) BS13 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151731 4tnk:B (5.2) BS14 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151732 4tnk:B (5.2) BS15 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151733 4tnk:B (5.2) BS16 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151734 4tnk:C (5.2) BS01 CLA ? GO:0005737 ... Q8DIF8 25006873
    151735 4tnk:C (5.2) BS02 CLA ? GO:0005737 ... Q8DIF8 25006873
    151736 4tnk:C (5.2) BS03 CLA ? GO:0005737 ... Q8DIF8 25006873
    151737 4tnk:C (5.2) BS04 CLA ? GO:0005737 ... Q8DIF8 25006873
    151738 4tnk:C (5.2) BS05 CLA ? GO:0005737 ... Q8DIF8 25006873
    151739 4tnk:C (5.2) BS06 CLA ? GO:0005737 ... Q8DIF8 25006873
    151740 4tnk:C (5.2) BS07 CLA ? GO:0005737 ... Q8DIF8 25006873
    151741 4tnk:C (5.2) BS08 CLA ? GO:0005737 ... Q8DIF8 25006873
    151742 4tnk:C (5.2) BS09 CLA ? GO:0005737 ... Q8DIF8 25006873
    151743 4tnk:C (5.2) BS10 CLA ? GO:0005737 ... Q8DIF8 25006873
    151744 4tnk:C (5.2) BS11 CLA ? GO:0005737 ... Q8DIF8 25006873
    151745 4tnk:C (5.2) BS12 CLA ? GO:0005737 ... Q8DIF8 25006873
    151746 4tnk:C (5.2) BS13 CLA ? GO:0005737 ... Q8DIF8 25006873
    151747 4tnk:D (5.2) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151748 4tnk:D (5.2) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151749 4tnk:D (5.2) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151750 4tnk:D (5.2) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151751 4tnk:D (5.2) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151752 4tnk:D (5.2) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151753 4tnk:D (5.2) BS07 BCT 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151754 4tnk:D (5.2) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151755 4tnk:D (5.2) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    151756 4tnk:E (5.2) BS01 peptide ? GO:0005506 ... Q8DIP0 25006873
    151757 4tnk:E (5.2) BS02 HEM ? GO:0005506 ... Q8DIP0 25006873
    151758 4tnk:F (5.2) BS01 HEM ? GO:0005506 ... Q8DIN9 25006873
    151759 4tnk:H (5.2) BS01 CLA ? GO:0009523 ... Q8DJ43 25006873
    151760 4tnk:H (5.2) BS02 CLA ? GO:0009523 ... Q8DJ43 25006873
    151761 4tnk:H (5.2) BS03 CLA ? GO:0009523 ... Q8DJ43 25006873
    151762 4tnk:I (5.2) BS01 CLA ? GO:0005737 ... Q8DJZ6 25006873
    151763 4tnk:K (5.2) BS01 peptide ? GO:0005737 ... Q9F1K9 25006873
    151764 4tnk:K (5.2) BS02 CLA ? GO:0005737 ... Q9F1K9 25006873
    151765 4tnk:K (5.2) BS03 CLA ? GO:0005737 ... Q9F1K9 25006873
    151766 4tnk:K (5.2) BS04 CA ? GO:0005737 ... Q9F1K9 25006873
    151767 4tnk:O (5.2) BS01 CA ? GO:0009654 ... P0A431 25006873
    151768 4tnk:V (5.2) BS01 HEM ? GO:0005506 ... P0A386 25006873
    151769 4tnk:Z (5.2) BS01 peptide ? GO:0009523 ... Q8DHJ2 25006873
    151770 4tnk:Z (5.2) BS02 CLA ? GO:0009523 ... Q8DHJ2 25006873
    151771 4tnk:a (5.2) BS01 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    151772 4tnk:a (5.2) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    151773 4tnk:a (5.2) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    151774 4tnk:a (5.2) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    151775 4tnk:a (5.2) BS05 OEX 1.10.3.9 GO:0005506 ... P0A444 25006873
    151776 4tnk:a (5.2) BS06 FE2 1.10.3.9 GO:0005506 ... P0A444 25006873
    151777 4tnk:a (5.2) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    151778 4tnk:a (5.2) BS08 PHO 1.10.3.9 GO:0005506 ... P0A444 25006873
    151779 4tnk:a (5.2) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 25006873
    151780 4tnk:b (5.2) BS01 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151781 4tnk:b (5.2) BS02 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151782 4tnk:b (5.2) BS03 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151783 4tnk:b (5.2) BS04 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151784 4tnk:b (5.2) BS05 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151785 4tnk:b (5.2) BS06 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151786 4tnk:b (5.2) BS07 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151787 4tnk:b (5.2) BS08 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151788 4tnk:b (5.2) BS09 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151789 4tnk:b (5.2) BS10 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151790 4tnk:b (5.2) BS11 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151791 4tnk:b (5.2) BS12 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151792 4tnk:b (5.2) BS13 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151793 4tnk:b (5.2) BS14 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151794 4tnk:b (5.2) BS15 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151795 4tnk:b (5.2) BS16 CLA ? GO:0009521 ... Q8DIQ1 25006873
    151796 4tnk:c (5.2) BS01 CLA ? GO:0005737 ... Q8DIF8 25006873
    151797 4tnk:c (5.2) BS02 CLA ? GO:0005737 ... Q8DIF8 25006873
    151798 4tnk:c (5.2) BS03 CLA ? GO:0005737 ... Q8DIF8 25006873
    151799 4tnk:c (5.2) BS04 CLA ? GO:0005737 ... Q8DIF8 25006873
    151800 4tnk:c (5.2) BS05 CLA ? GO:0005737 ... Q8DIF8 25006873
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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