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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    139201 4lr8:A (2.0) BS04 HSX 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139202 4lr8:A (2.0) BS05 HSX 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139203 4lr8:B (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139204 4lr8:B (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139205 4lr8:C (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139206 4lr8:C (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139207 4lr8:C (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139208 4lr9:A (2.1) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139209 4lr9:A (2.1) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139210 4lr9:A (2.1) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139211 4lr9:A (2.1) BS04 1X4 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139212 4lr9:B (2.1) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139213 4lr9:B (2.1) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139214 4lr9:C (2.1) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139215 4lr9:C (2.1) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139216 4lr9:C (2.1) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139217 4lra:A (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139218 4lra:A (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139219 4lra:A (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139220 4lra:B (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139221 4lra:B (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139222 4lra:B (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139223 4lra:C (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139224 4lra:C (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139225 4lra:C (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139226 4lrb:A (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139227 4lrb:A (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139228 4lrb:A (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139229 4lrb:A (2.0) BS04 1X4 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139230 4lrb:B (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139231 4lrb:B (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139232 4lrb:C (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139233 4lrb:C (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139234 4lrb:C (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139235 4lrc:A (1.89) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139236 4lrc:A (1.89) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139237 4lrc:A (1.89) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139238 4lrc:B (1.89) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139239 4lrc:B (1.89) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139240 4lrc:C (1.89) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139241 4lrc:C (1.89) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139242 4lrc:C (1.89) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139243 4lrd:A (1.78) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139244 4lrd:A (1.78) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139245 4lrd:A (1.78) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139246 4lre:A (2.1) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139247 4lre:A (2.1) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139248 4lre:A (2.1) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139249 4lre:A (2.1) BS04 1X4 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139250 4lre:B (2.1) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139251 4lre:B (2.1) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139252 4lre:C (2.1) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139253 4lre:C (2.1) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139254 4lre:C (2.1) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139255 4lrf:A (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139256 4lrf:A (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139257 4lrf:A (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139258 4lrf:A (2.0) BS04 HSX 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139259 4lrf:A (2.0) BS05 HSX 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139260 4lrf:B (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139261 4lrf:B (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139262 4lrf:B (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139263 4lrf:C (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139264 4lrf:C (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139265 4lrf:C (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    139266 4lrr:A (2.41) BS01 CF9 2.1.1.45 GO:0004799 ... P0A886 24147825 MOAD: Ki=6uM
    PDBbind: -logKd/Ki=5.22, Ki=6uM
    139267 4lrr:A (2.41) BS02 UMP 2.1.1.45 GO:0004799 ... P0A886 24147825
    139268 4lrw:A (2.151) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 24256730
    139269 4lrw:B (2.151) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 24256730
    139270 4lrz:A (2.32) BS01 ADP 2.7.1.121 GO:0000287 ... P76014 24440518
    139271 4lrz:A (2.32) BS02 MG 2.7.1.121 GO:0000287 ... P76014 24440518
    139272 4lrz:A (2.32) BS03 MG 2.7.1.121 GO:0000287 ... P76014 24440518
    139273 4lrz:B (2.32) BS01 ADP 2.7.1.121 GO:0000287 ... P76014 24440518
    139274 4lrz:B (2.32) BS02 MG 2.7.1.121 GO:0000287 ... P76014 24440518
    139275 4lrz:B (2.32) BS03 MG 2.7.1.121 GO:0000287 ... P76014 24440518
    139276 4lrz:C (2.32) BS01 ADP 2.7.1.121 GO:0000287 ... P76014 24440518
    139277 4lrz:C (2.32) BS02 MG 2.7.1.121 GO:0000287 ... P76014 24440518
    139278 4lrz:C (2.32) BS03 MG 2.7.1.121 GO:0000287 ... P76014 24440518
    139279 4lrz:D (2.32) BS01 ADP 2.7.1.121 GO:0000287 ... P76014 24440518
    139280 4lrz:D (2.32) BS02 MG 2.7.1.121 GO:0000287 ... P76014 24440518
    139281 4lrz:D (2.32) BS03 MG 2.7.1.121 GO:0000287 ... P76014 24440518
    139282 4ls0:A (2.07) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 N/A
    139283 4ls0:A (2.07) BS02 B3B 1.3.5.2 GO:0004151 ... Q02127 N/A
    139284 4ls1:A (2.2) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 N/A
    139285 4ls1:A (2.2) BS02 3X2 1.3.5.2 GO:0004151 ... Q02127 N/A
    139286 4ls2:A (2.27) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 N/A
    139287 4ls2:A (2.27) BS02 3XS 1.3.5.2 GO:0004151 ... Q02127 N/A
    139288 4ls7:A (1.674) BS01 1X9 2.3.1.179 GO:0004315 ... O34340 24641521
    139289 4ls7:B (1.674) BS01 1X9 2.3.1.179 GO:0004315 ... O34340 24641521
    139290 4ls8:A (2.1) BS01 1XG 2.3.1.179 GO:0004315 ... O34340 24641521
    139291 4ls8:B (2.1) BS01 1XG 2.3.1.179 GO:0004315 ... O34340 24641521
    139292 4lse:A (2.1) BS01 MG ? GO:0001530 ... P02931 24106986
    139293 4lse:B (2.1) BS01 MG ? GO:0001530 ... P02931 24106986
    139294 4lse:C (2.1) BS01 MG ? GO:0001530 ... P02931 24106986
    139295 4lse:C (2.1) BS02 MG ? GO:0001530 ... P02931 24106986
    139296 4lsi:A (2.089) BS01 MG ? GO:0001530 ... P02931 24106986
    139297 4lsi:A (2.089) BS02 MG ? GO:0001530 ... P02931 24106986
    139298 4lsi:B (2.089) BS01 C8E ? GO:0001530 ... P02931 24106986
    139299 4lsi:B (2.089) BS02 C8E ? GO:0001530 ... P02931 24106986
    139300 4lsi:B (2.089) BS03 MG ? GO:0001530 ... P02931 24106986
    139301 4lsi:B (2.089) BS04 MG ? GO:0001530 ... P02931 24106986
    139302 4lsi:C (2.089) BS01 C8E ? GO:0001530 ... P02931 24106986
    139303 4lsi:C (2.089) BS02 MG ? GO:0001530 ... P02931 24106986
    139304 4lsi:C (2.089) BS03 MG ? GO:0001530 ... P02931 24106986
    139305 4lsi:C (2.089) BS04 MG ? GO:0001530 ... P02931 24106986
    139306 4lsi:C (2.089) BS05 MG ? GO:0001530 ... P02931 24106986
    139307 4lsk:QB (3.48001) BS01 rna ? GO:0003735 ... P80371 25128388
    139308 4lsk:QC (3.48001) BS01 rna ? GO:0003676 ... P80372 25128388
    139309 4lsk:QD (3.48001) BS01 rna ? GO:0003723 ... P80373 25128388
    139310 4lsk:QD (3.48001) BS02 ZN ? GO:0003723 ... P80373 25128388
    139311 4lsk:QE (3.48001) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    139312 4lsk:QF (3.48001) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    139313 4lsk:QF (3.48001) BS02 MG ? GO:0003735 ... Q5SLP8 25128388
    139314 4lsk:QG (3.48001) BS01 rna ? GO:0000028 ... P17291 25128388
    139315 4lsk:QH (3.48001) BS01 rna N/A GO:0003735 ... N/A 25128388
    139316 4lsk:QH (3.48001) BS02 MG N/A GO:0003735 ... N/A 25128388
    139317 4lsk:QI (3.48001) BS01 rna ? GO:0000049 ... P80374 25128388
    139318 4lsk:QI (3.48001) BS02 rna ? GO:0000049 ... P80374 25128388
    139319 4lsk:QJ (3.48001) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    139320 4lsk:QK (3.48001) BS01 rna ? GO:0003735 ... P80376 25128388
    139321 4lsk:QL (3.48001) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    139322 4lsk:QM (3.48001) BS01 rna ? GO:0000049 ... P80377 25128388
    139323 4lsk:QM (3.48001) BS02 rna ? GO:0000049 ... P80377 25128388
    139324 4lsk:QM (3.48001) BS03 MG ? GO:0000049 ... P80377 25128388
    139325 4lsk:QN (3.48001) BS01 rna N/A GO:0003735 ... N/A 25128388
    139326 4lsk:QN (3.48001) BS02 ZN N/A GO:0003735 ... N/A 25128388
    139327 4lsk:QO (3.48001) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    139328 4lsk:QO (3.48001) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    139329 4lsk:QP (3.48001) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    139330 4lsk:QQ (3.48001) BS01 rna N/A GO:0003735 ... N/A 25128388
    139331 4lsk:QR (3.48001) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    139332 4lsk:QS (3.48001) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    139333 4lsk:QT (3.48001) BS01 rna ? GO:0003723 ... P80380 25128388
    139334 4lsk:R0 (3.48001) BS01 rna ? GO:0003735 ... P60493 25128388
    139335 4lsk:R0 (3.48001) BS02 rna ? GO:0003735 ... P60493 25128388
    139336 4lsk:R0 (3.48001) BS03 rna ? GO:0003735 ... P60493 25128388
    139337 4lsk:R1 (3.48001) BS01 rna ? GO:0003735 ... P60494 25128388
    139338 4lsk:R2 (3.48001) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    139339 4lsk:R3 (3.48001) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    139340 4lsk:R3 (3.48001) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    139341 4lsk:R4 (3.48001) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    139342 4lsk:R5 (3.48001) BS01 rna ? GO:0003735 ... P80339 25128388
    139343 4lsk:R6 (3.48001) BS01 rna ? GO:0000049 ... P35871 25128388
    139344 4lsk:R7 (3.48001) BS01 rna ? GO:0003735 ... P80340 25128388
    139345 4lsk:R8 (3.48001) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    139346 4lsk:R9 (3.48001) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    139347 4lsk:RD (3.48001) BS01 rna ? GO:0002181 ... P60405 25128388
    139348 4lsk:RD (3.48001) BS02 MG ? GO:0002181 ... P60405 25128388
    139349 4lsk:RD (3.48001) BS03 MG ? GO:0002181 ... P60405 25128388
    139350 4lsk:RE (3.48001) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    139351 4lsk:RF (3.48001) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    139352 4lsk:RG (3.48001) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    139353 4lsk:RG (3.48001) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    139354 4lsk:RH (3.48001) BS01 rna N/A GO:0003735 ... N/A 25128388
    139355 4lsk:RI (3.48001) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    139356 4lsk:RN (3.48001) BS01 rna ? GO:0003729 ... P60488 25128388
    139357 4lsk:RO (3.48001) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    139358 4lsk:RO (3.48001) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    139359 4lsk:RP (3.48001) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    139360 4lsk:RQ (3.48001) BS01 rna ? GO:0000049 ... P60489 25128388
    139361 4lsk:RQ (3.48001) BS02 rna ? GO:0000049 ... P60489 25128388
    139362 4lsk:RR (3.48001) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    139363 4lsk:RS (3.48001) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    139364 4lsk:RS (3.48001) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    139365 4lsk:RT (3.48001) BS01 rna ? GO:0003735 ... P60490 25128388
    139366 4lsk:RT (3.48001) BS02 rna ? GO:0003735 ... P60490 25128388
    139367 4lsk:RU (3.48001) BS01 rna ? GO:0000027 ... P60491 25128388
    139368 4lsk:RV (3.48001) BS01 rna ? GO:0003723 ... P60492 25128388
    139369 4lsk:RW (3.48001) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    139370 4lsk:RX (3.48001) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    139371 4lsk:RY (3.48001) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    139372 4lsk:RZ (3.48001) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    139373 4lsk:RZ (3.48001) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    139374 4lsk:XB (3.48001) BS01 rna ? GO:0003735 ... P80371 25128388
    139375 4lsk:XC (3.48001) BS01 rna ? GO:0003676 ... P80372 25128388
    139376 4lsk:XD (3.48001) BS01 rna ? GO:0003723 ... P80373 25128388
    139377 4lsk:XD (3.48001) BS02 ZN ? GO:0003723 ... P80373 25128388
    139378 4lsk:XE (3.48001) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    139379 4lsk:XF (3.48001) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    139380 4lsk:XG (3.48001) BS01 rna ? GO:0000028 ... P17291 25128388
    139381 4lsk:XH (3.48001) BS01 rna N/A GO:0003735 ... N/A 25128388
    139382 4lsk:XI (3.48001) BS01 rna ? GO:0000049 ... P80374 25128388
    139383 4lsk:XI (3.48001) BS02 rna ? GO:0000049 ... P80374 25128388
    139384 4lsk:XJ (3.48001) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    139385 4lsk:XK (3.48001) BS01 rna ? GO:0003735 ... P80376 25128388
    139386 4lsk:XL (3.48001) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    139387 4lsk:XM (3.48001) BS01 rna ? GO:0000049 ... P80377 25128388
    139388 4lsk:XM (3.48001) BS02 rna ? GO:0000049 ... P80377 25128388
    139389 4lsk:XM (3.48001) BS03 MG ? GO:0000049 ... P80377 25128388
    139390 4lsk:XN (3.48001) BS01 rna N/A GO:0003735 ... N/A 25128388
    139391 4lsk:XN (3.48001) BS02 ZN N/A GO:0003735 ... N/A 25128388
    139392 4lsk:XO (3.48001) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    139393 4lsk:XO (3.48001) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    139394 4lsk:XP (3.48001) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    139395 4lsk:XQ (3.48001) BS01 rna N/A GO:0003735 ... N/A 25128388
    139396 4lsk:XR (3.48001) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    139397 4lsk:XS (3.48001) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    139398 4lsk:XT (3.48001) BS01 rna ? GO:0003723 ... P80380 25128388
    139399 4lsk:Y0 (3.48001) BS01 rna ? GO:0003735 ... P60493 25128388
    139400 4lsk:Y0 (3.48001) BS02 rna ? GO:0003735 ... P60493 25128388
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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