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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    132801 4ixq:K (5.7) BS01 peptide ? GO:0005737 ... Q9F1K9 23413188
    132802 4ixq:K (5.7) BS02 CLA ? GO:0005737 ... Q9F1K9 23413188
    132803 4ixq:K (5.7) BS03 CLA ? GO:0005737 ... Q9F1K9 23413188
    132804 4ixq:K (5.7) BS04 CA ? GO:0005737 ... Q9F1K9 23413188
    132805 4ixq:O (5.7) BS01 CA ? GO:0009654 ... P0A431 23413188
    132806 4ixq:V (5.7) BS01 HEM ? GO:0005506 ... P0A386 23413188
    132807 4ixq:Z (5.7) BS01 peptide ? GO:0009523 ... Q8DHJ2 23413188
    132808 4ixq:Z (5.7) BS02 CLA ? GO:0009523 ... Q8DHJ2 23413188
    132809 4ixq:a (5.7) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 23413188
    132810 4ixq:a (5.7) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    132811 4ixq:a (5.7) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    132812 4ixq:a (5.7) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    132813 4ixq:a (5.7) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 23413188
    132814 4ixq:a (5.7) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 23413188
    132815 4ixq:a (5.7) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    132816 4ixq:a (5.7) BS08 OEC 1.10.3.9 GO:0005506 ... P0A444 23413188
    132817 4ixq:a (5.7) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    132818 4ixq:a (5.7) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 23413188
    132819 4ixq:b (5.7) BS01 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132820 4ixq:b (5.7) BS02 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132821 4ixq:b (5.7) BS03 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132822 4ixq:b (5.7) BS04 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132823 4ixq:b (5.7) BS05 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132824 4ixq:b (5.7) BS06 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132825 4ixq:b (5.7) BS07 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132826 4ixq:b (5.7) BS08 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132827 4ixq:b (5.7) BS09 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132828 4ixq:b (5.7) BS10 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132829 4ixq:b (5.7) BS11 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132830 4ixq:b (5.7) BS12 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132831 4ixq:b (5.7) BS13 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132832 4ixq:b (5.7) BS14 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132833 4ixq:b (5.7) BS15 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132834 4ixq:b (5.7) BS16 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132835 4ixq:c (5.7) BS01 CLA ? GO:0005737 ... Q8DIF8 23413188
    132836 4ixq:c (5.7) BS02 CLA ? GO:0005737 ... Q8DIF8 23413188
    132837 4ixq:c (5.7) BS03 CLA ? GO:0005737 ... Q8DIF8 23413188
    132838 4ixq:c (5.7) BS04 CLA ? GO:0005737 ... Q8DIF8 23413188
    132839 4ixq:c (5.7) BS05 CLA ? GO:0005737 ... Q8DIF8 23413188
    132840 4ixq:c (5.7) BS06 CLA ? GO:0005737 ... Q8DIF8 23413188
    132841 4ixq:c (5.7) BS07 CLA ? GO:0005737 ... Q8DIF8 23413188
    132842 4ixq:c (5.7) BS08 CLA ? GO:0005737 ... Q8DIF8 23413188
    132843 4ixq:c (5.7) BS09 CLA ? GO:0005737 ... Q8DIF8 23413188
    132844 4ixq:c (5.7) BS10 CLA ? GO:0005737 ... Q8DIF8 23413188
    132845 4ixq:c (5.7) BS11 CLA ? GO:0005737 ... Q8DIF8 23413188
    132846 4ixq:c (5.7) BS12 CLA ? GO:0005737 ... Q8DIF8 23413188
    132847 4ixq:c (5.7) BS13 CLA ? GO:0005737 ... Q8DIF8 23413188
    132848 4ixq:d (5.7) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132849 4ixq:d (5.7) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132850 4ixq:d (5.7) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132851 4ixq:d (5.7) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132852 4ixq:d (5.7) BS05 PHO 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132853 4ixq:d (5.7) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132854 4ixq:d (5.7) BS07 BCT 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132855 4ixq:d (5.7) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132856 4ixq:d (5.7) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132857 4ixq:e (5.7) BS01 HEM ? GO:0005506 ... Q8DIP0 23413188
    132858 4ixq:f (5.7) BS01 HEM ? GO:0005506 ... Q8DIN9 23413188
    132859 4ixq:h (5.7) BS01 CLA ? GO:0009523 ... Q8DJ43 23413188
    132860 4ixq:h (5.7) BS02 CLA ? GO:0009523 ... Q8DJ43 23413188
    132861 4ixq:h (5.7) BS03 CLA ? GO:0009523 ... Q8DJ43 23413188
    132862 4ixq:h (5.7) BS04 CLA ? GO:0009523 ... Q8DJ43 23413188
    132863 4ixq:i (5.7) BS01 CLA ? GO:0005737 ... Q8DJZ6 23413188
    132864 4ixq:k (5.7) BS01 peptide ? GO:0005737 ... Q9F1K9 23413188
    132865 4ixq:k (5.7) BS02 CLA ? GO:0005737 ... Q9F1K9 23413188
    132866 4ixq:k (5.7) BS03 CLA ? GO:0005737 ... Q9F1K9 23413188
    132867 4ixq:k (5.7) BS04 CA ? GO:0005737 ... Q9F1K9 23413188
    132868 4ixq:o (5.7) BS01 CA ? GO:0009654 ... P0A431 23413188
    132869 4ixq:v (5.7) BS01 HEM ? GO:0005506 ... P0A386 23413188
    132870 4ixq:z (5.7) BS01 peptide ? GO:0009523 ... Q8DHJ2 23413188
    132871 4ixq:z (5.7) BS02 CLA ? GO:0009523 ... Q8DHJ2 23413188
    132872 4ixr:A (5.9) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 23413188
    132873 4ixr:A (5.9) BS02 BCT 1.10.3.9 GO:0005506 ... P0A444 23413188
    132874 4ixr:A (5.9) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    132875 4ixr:A (5.9) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    132876 4ixr:A (5.9) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    132877 4ixr:A (5.9) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 23413188
    132878 4ixr:A (5.9) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    132879 4ixr:A (5.9) BS08 OEC 1.10.3.9 GO:0005506 ... P0A444 23413188
    132880 4ixr:A (5.9) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    132881 4ixr:A (5.9) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 23413188
    132882 4ixr:B (5.9) BS01 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132883 4ixr:B (5.9) BS02 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132884 4ixr:B (5.9) BS03 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132885 4ixr:B (5.9) BS04 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132886 4ixr:B (5.9) BS05 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132887 4ixr:B (5.9) BS06 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132888 4ixr:B (5.9) BS07 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132889 4ixr:B (5.9) BS08 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132890 4ixr:B (5.9) BS09 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132891 4ixr:B (5.9) BS10 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132892 4ixr:B (5.9) BS11 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132893 4ixr:B (5.9) BS12 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132894 4ixr:B (5.9) BS13 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132895 4ixr:B (5.9) BS14 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132896 4ixr:B (5.9) BS15 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132897 4ixr:B (5.9) BS16 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132898 4ixr:C (5.9) BS01 CLA ? GO:0005737 ... Q8DIF8 23413188
    132899 4ixr:C (5.9) BS02 CLA ? GO:0005737 ... Q8DIF8 23413188
    132900 4ixr:C (5.9) BS03 CLA ? GO:0005737 ... Q8DIF8 23413188
    132901 4ixr:C (5.9) BS04 CLA ? GO:0005737 ... Q8DIF8 23413188
    132902 4ixr:C (5.9) BS05 CLA ? GO:0005737 ... Q8DIF8 23413188
    132903 4ixr:C (5.9) BS06 CLA ? GO:0005737 ... Q8DIF8 23413188
    132904 4ixr:C (5.9) BS07 CLA ? GO:0005737 ... Q8DIF8 23413188
    132905 4ixr:C (5.9) BS08 CLA ? GO:0005737 ... Q8DIF8 23413188
    132906 4ixr:C (5.9) BS09 CLA ? GO:0005737 ... Q8DIF8 23413188
    132907 4ixr:C (5.9) BS10 CLA ? GO:0005737 ... Q8DIF8 23413188
    132908 4ixr:C (5.9) BS11 CLA ? GO:0005737 ... Q8DIF8 23413188
    132909 4ixr:C (5.9) BS12 CLA ? GO:0005737 ... Q8DIF8 23413188
    132910 4ixr:C (5.9) BS13 CLA ? GO:0005737 ... Q8DIF8 23413188
    132911 4ixr:D (5.9) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132912 4ixr:D (5.9) BS02 BCT 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132913 4ixr:D (5.9) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132914 4ixr:D (5.9) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132915 4ixr:D (5.9) BS05 PHO 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132916 4ixr:D (5.9) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132917 4ixr:D (5.9) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132918 4ixr:D (5.9) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132919 4ixr:D (5.9) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132920 4ixr:E (5.9) BS01 peptide ? GO:0005506 ... Q8DIP0 23413188
    132921 4ixr:E (5.9) BS02 HEM ? GO:0005506 ... Q8DIP0 23413188
    132922 4ixr:F (5.9) BS01 HEM ? GO:0005506 ... Q8DIN9 23413188
    132923 4ixr:H (5.9) BS01 CLA ? GO:0009523 ... Q8DJ43 23413188
    132924 4ixr:H (5.9) BS02 CLA ? GO:0009523 ... Q8DJ43 23413188
    132925 4ixr:H (5.9) BS03 CLA ? GO:0009523 ... Q8DJ43 23413188
    132926 4ixr:H (5.9) BS04 CLA ? GO:0009523 ... Q8DJ43 23413188
    132927 4ixr:I (5.9) BS01 CLA ? GO:0005737 ... Q8DJZ6 23413188
    132928 4ixr:K (5.9) BS01 peptide ? GO:0005737 ... Q9F1K9 23413188
    132929 4ixr:K (5.9) BS02 CLA ? GO:0005737 ... Q9F1K9 23413188
    132930 4ixr:K (5.9) BS03 CA ? GO:0005737 ... Q9F1K9 23413188
    132931 4ixr:O (5.9) BS01 CA ? GO:0009654 ... P0A431 23413188
    132932 4ixr:V (5.9) BS01 HEM ? GO:0005506 ... P0A386 23413188
    132933 4ixr:X (5.9) BS01 CLA ? GO:0009523 ... Q9F1R6 23413188
    132934 4ixr:Z (5.9) BS01 peptide ? GO:0009523 ... Q8DHJ2 23413188
    132935 4ixr:Z (5.9) BS02 CLA ? GO:0009523 ... Q8DHJ2 23413188
    132936 4ixr:a (5.9) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 23413188
    132937 4ixr:a (5.9) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    132938 4ixr:a (5.9) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    132939 4ixr:a (5.9) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    132940 4ixr:a (5.9) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 23413188
    132941 4ixr:a (5.9) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 23413188
    132942 4ixr:a (5.9) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    132943 4ixr:a (5.9) BS08 OEC 1.10.3.9 GO:0005506 ... P0A444 23413188
    132944 4ixr:a (5.9) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    132945 4ixr:a (5.9) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 23413188
    132946 4ixr:b (5.9) BS01 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132947 4ixr:b (5.9) BS02 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132948 4ixr:b (5.9) BS03 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132949 4ixr:b (5.9) BS04 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132950 4ixr:b (5.9) BS05 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132951 4ixr:b (5.9) BS06 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132952 4ixr:b (5.9) BS07 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132953 4ixr:b (5.9) BS08 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132954 4ixr:b (5.9) BS09 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132955 4ixr:b (5.9) BS10 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132956 4ixr:b (5.9) BS11 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132957 4ixr:b (5.9) BS12 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132958 4ixr:b (5.9) BS13 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132959 4ixr:b (5.9) BS14 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132960 4ixr:b (5.9) BS15 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132961 4ixr:b (5.9) BS16 CLA ? GO:0009521 ... Q8DIQ1 23413188
    132962 4ixr:c (5.9) BS01 CLA ? GO:0005737 ... Q8DIF8 23413188
    132963 4ixr:c (5.9) BS02 CLA ? GO:0005737 ... Q8DIF8 23413188
    132964 4ixr:c (5.9) BS03 CLA ? GO:0005737 ... Q8DIF8 23413188
    132965 4ixr:c (5.9) BS04 CLA ? GO:0005737 ... Q8DIF8 23413188
    132966 4ixr:c (5.9) BS05 CLA ? GO:0005737 ... Q8DIF8 23413188
    132967 4ixr:c (5.9) BS06 CLA ? GO:0005737 ... Q8DIF8 23413188
    132968 4ixr:c (5.9) BS07 CLA ? GO:0005737 ... Q8DIF8 23413188
    132969 4ixr:c (5.9) BS08 CLA ? GO:0005737 ... Q8DIF8 23413188
    132970 4ixr:c (5.9) BS09 CLA ? GO:0005737 ... Q8DIF8 23413188
    132971 4ixr:c (5.9) BS10 CLA ? GO:0005737 ... Q8DIF8 23413188
    132972 4ixr:c (5.9) BS11 CLA ? GO:0005737 ... Q8DIF8 23413188
    132973 4ixr:c (5.9) BS12 CLA ? GO:0005737 ... Q8DIF8 23413188
    132974 4ixr:c (5.9) BS13 CLA ? GO:0005737 ... Q8DIF8 23413188
    132975 4ixr:d (5.9) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132976 4ixr:d (5.9) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132977 4ixr:d (5.9) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132978 4ixr:d (5.9) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132979 4ixr:d (5.9) BS05 PHO 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132980 4ixr:d (5.9) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132981 4ixr:d (5.9) BS07 BCT 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132982 4ixr:d (5.9) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132983 4ixr:d (5.9) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    132984 4ixr:e (5.9) BS01 HEM ? GO:0005506 ... Q8DIP0 23413188
    132985 4ixr:f (5.9) BS01 HEM ? GO:0005506 ... Q8DIN9 23413188
    132986 4ixr:h (5.9) BS01 CLA ? GO:0009523 ... Q8DJ43 23413188
    132987 4ixr:h (5.9) BS02 CLA ? GO:0009523 ... Q8DJ43 23413188
    132988 4ixr:h (5.9) BS03 CLA ? GO:0009523 ... Q8DJ43 23413188
    132989 4ixr:i (5.9) BS01 CLA ? GO:0005737 ... Q8DJZ6 23413188
    132990 4ixr:k (5.9) BS01 peptide ? GO:0005737 ... Q9F1K9 23413188
    132991 4ixr:k (5.9) BS02 CLA ? GO:0005737 ... Q9F1K9 23413188
    132992 4ixr:k (5.9) BS03 CLA ? GO:0005737 ... Q9F1K9 23413188
    132993 4ixr:k (5.9) BS04 CA ? GO:0005737 ... Q9F1K9 23413188
    132994 4ixr:o (5.9) BS01 CA ? GO:0009654 ... P0A431 23413188
    132995 4ixr:v (5.9) BS01 HEM ? GO:0005506 ... P0A386 23413188
    132996 4ixr:z (5.9) BS01 peptide ? GO:0009523 ... Q8DHJ2 23413188
    132997 4ixr:z (5.9) BS02 CLA ? GO:0009523 ... Q8DHJ2 23413188
    132998 4ixs:B (2.29) BS01 CO3 4.4.1.1 GO:0003962 ... Q5H4T8 24531493
    132999 4ixx:A (2.4) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 23754471
    133000 4ixx:B (2.4) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 23754471
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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