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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    119201 4avs:A (1.399) BS01 CA ? GO:0001849 ... P02743 25084341
    119202 4avs:A (1.399) BS02 CA ? GO:0001849 ... P02743 25084341
    119203 4avs:A (1.399) BS03 N7P ? GO:0001849 ... P02743 25084341 PDBbind: -logKd/Ki=3.49, Kd=322uM
    119204 4avs:B (1.399) BS01 CA ? GO:0001849 ... P02743 25084341
    119205 4avs:B (1.399) BS02 CA ? GO:0001849 ... P02743 25084341
    119206 4avs:B (1.399) BS03 N7P ? GO:0001849 ... P02743 25084341
    119207 4avs:C (1.399) BS01 CA ? GO:0001849 ... P02743 25084341
    119208 4avs:C (1.399) BS02 CA ? GO:0001849 ... P02743 25084341
    119209 4avs:C (1.399) BS03 N7P ? GO:0001849 ... P02743 25084341
    119210 4avs:D (1.399) BS01 CA ? GO:0001849 ... P02743 25084341
    119211 4avs:D (1.399) BS02 CA ? GO:0001849 ... P02743 25084341
    119212 4avs:D (1.399) BS03 N7P ? GO:0001849 ... P02743 25084341
    119213 4avs:E (1.399) BS01 CA ? GO:0001849 ... P02743 25084341
    119214 4avs:E (1.399) BS02 CA ? GO:0001849 ... P02743 25084341
    119215 4avs:E (1.399) BS03 N7P ? GO:0001849 ... P02743 25084341
    119216 4avt:A (3.2) BS01 CA ? GO:0001849 ... P02743 25084341
    119217 4avt:A (3.2) BS02 CA ? GO:0001849 ... P02743 25084341
    119218 4avt:A (3.2) BS03 GHE ? GO:0001849 ... P02743 25084341
    119219 4avt:B (3.2) BS01 CA ? GO:0001849 ... P02743 25084341
    119220 4avt:B (3.2) BS02 CA ? GO:0001849 ... P02743 25084341
    119221 4avt:B (3.2) BS03 GHE ? GO:0001849 ... P02743 25084341
    119222 4avt:C (3.2) BS01 CA ? GO:0001849 ... P02743 25084341
    119223 4avt:C (3.2) BS02 CA ? GO:0001849 ... P02743 25084341
    119224 4avt:C (3.2) BS03 GHE ? GO:0001849 ... P02743 25084341 PDBbind: -logKd/Ki=8.06, Kd=0.0088uM
    119225 4avt:D (3.2) BS01 GHE ? GO:0001849 ... P02743 25084341
    119226 4avt:D (3.2) BS02 CA ? GO:0001849 ... P02743 25084341
    119227 4avt:D (3.2) BS03 CA ? GO:0001849 ... P02743 25084341
    119228 4avt:E (3.2) BS01 CA ? GO:0001849 ... P02743 25084341
    119229 4avt:E (3.2) BS02 CA ? GO:0001849 ... P02743 25084341
    119230 4avt:E (3.2) BS03 GHE ? GO:0001849 ... P02743 25084341
    119231 4avt:F (3.2) BS01 GHE ? GO:0001849 ... P02743 25084341
    119232 4avt:F (3.2) BS02 CA ? GO:0001849 ... P02743 25084341
    119233 4avt:F (3.2) BS03 CA ? GO:0001849 ... P02743 25084341
    119234 4avt:G (3.2) BS01 CA ? GO:0001849 ... P02743 25084341
    119235 4avt:G (3.2) BS02 CA ? GO:0001849 ... P02743 25084341
    119236 4avt:G (3.2) BS03 GHE ? GO:0001849 ... P02743 25084341
    119237 4avt:H (3.2) BS01 GHE ? GO:0001849 ... P02743 25084341
    119238 4avt:H (3.2) BS02 CA ? GO:0001849 ... P02743 25084341
    119239 4avt:H (3.2) BS03 CA ? GO:0001849 ... P02743 25084341
    119240 4avt:I (3.2) BS01 CA ? GO:0001849 ... P02743 25084341
    119241 4avt:I (3.2) BS02 CA ? GO:0001849 ... P02743 25084341
    119242 4avt:I (3.2) BS03 GHE ? GO:0001849 ... P02743 25084341
    119243 4avt:J (3.2) BS01 CA ? GO:0001849 ... P02743 25084341
    119244 4avt:J (3.2) BS02 CA ? GO:0001849 ... P02743 25084341
    119245 4avt:J (3.2) BS03 GHE ? GO:0001849 ... P02743 25084341
    119246 4avv:A (1.6) BS01 GHE ? GO:0001849 ... P02743 25084341 MOAD: Kd=0.0088uM
    119247 4avv:B (1.6) BS01 GHE ? GO:0001849 ... P02743 25084341 MOAD: Kd=0.0088uM
    119248 4avv:B (1.6) BS02 SIA ? GO:0001849 ... P02743 25084341
    119249 4avv:C (1.6) BS01 GHE ? GO:0001849 ... P02743 25084341 MOAD: Kd=0.0088uM
    119250 4avv:D (1.6) BS01 GHE ? GO:0001849 ... P02743 25084341 MOAD: Kd=0.0088uM
    119251 4avv:E (1.6) BS01 SIA ? GO:0001849 ... P02743 25084341
    119252 4avv:E (1.6) BS02 GHE ? GO:0001849 ... P02743 25084341 MOAD: Kd=0.0088uM
    119253 4aw6:A (3.4) BS01 ZN 3.4.24.84 GO:0001889 ... O75844 23539603
    119254 4aw6:B (3.4) BS01 ZN 3.4.24.84 GO:0001889 ... O75844 23539603
    119255 4aw6:D (3.4) BS01 ZN 3.4.24.84 GO:0001889 ... O75844 23539603
    119256 4aw6:E (3.4) BS01 ZN 3.4.24.84 GO:0001889 ... O75844 23539603
    119257 4awl:A (3.08) BS01 dna ? GO:0003677 ... P23511 23332751
    119258 4awl:A (3.08) BS02 dna ? GO:0003677 ... P23511 23332751
    119259 4awl:B (3.08) BS01 dna ? GO:0001228 ... P25208 23332751
    119260 4awl:B (3.08) BS02 dna ? GO:0001228 ... P25208 23332751
    119261 4awn:A (1.95) BS01 CA 3.1.21.1 GO:0002283 ... P24855 23215638
    119262 4awn:A (1.95) BS02 CA 3.1.21.1 GO:0002283 ... P24855 23215638
    119263 4awn:A (1.95) BS03 PO4 3.1.21.1 GO:0002283 ... P24855 23215638
    119264 4aws:A (1.0) BS01 FMN 1.6.99.1 GO:0000166 ... Q8EEC8 N/A
    119265 4aws:A (1.0) BS02 01F 1.6.99.1 GO:0000166 ... Q8EEC8 N/A
    119266 4awt:A (0.98) BS01 FMN 1.6.99.1 GO:0000166 ... Q8EEC8 N/A
    119267 4awt:A (0.98) BS02 01F 1.6.99.1 GO:0000166 ... Q8EEC8 N/A
    119268 4awu:A (1.69) BS01 FMN 1.6.99.1 GO:0000166 ... Q8EEC8 N/A
    119269 4awu:A (1.69) BS02 4CH 1.6.99.1 GO:0000166 ... Q8EEC8 N/A
    119270 4awu:A (1.69) BS03 4CH 1.6.99.1 GO:0000166 ... Q8EEC8 N/A
    119271 4awu:A (1.69) BS04 4CH 1.6.99.1 GO:0000166 ... Q8EEC8 N/A
    119272 4ax3:A (1.6) BS01 CU 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    119273 4ax3:A (1.6) BS02 CU 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    119274 4ax3:A (1.6) BS03 HEC 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    119275 4ax3:B (1.6) BS01 CU 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    119276 4ax3:B (1.6) BS02 CU 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    119277 4ax3:B (1.6) BS03 HEC 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    119278 4ax3:C (1.6) BS01 CU 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    119279 4ax3:C (1.6) BS02 CU 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    119280 4ax3:C (1.6) BS03 HEC 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    119281 4ax3:D (1.6) BS01 CU 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    119282 4ax3:D (1.6) BS02 CU 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    119283 4ax3:D (1.6) BS03 HEC 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    119284 4axa:A (1.9) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 22781553
    119285 4axa:A (1.9) BS02 RKD 2.7.11.11 GO:0001669 ... P00517 22781553 PDBbind: -logKd/Ki=8.00, IC50<10nM
    119286 4axb:A (2.4) BS01 FUL 3.1.1.8 GO:0001540 ... P06276 22922115
    119287 4axb:A (2.4) BS02 FP1 3.1.1.8 GO:0001540 ... P06276 22922115
    119288 4axc:A (2.25) BS01 ZN 2.7.1.158 GO:0005524 ... Q93YN9 22745128
    119289 4axd:A (2.05) BS01 ANP 2.7.1.158 GO:0005524 ... Q93YN9 22745128 MOAD: Kd=37uM
    PDBbind: -logKd/Ki=4.43, Kd=37uM
    119290 4axd:A (2.05) BS02 ZN 2.7.1.158 GO:0005524 ... Q93YN9 22745128
    119291 4axe:A (2.5) BS01 ADP 2.7.1.158 GO:0005524 ... Q93YN9 22745128
    119292 4axe:A (2.5) BS02 ZN 2.7.1.158 GO:0005524 ... Q93YN9 22745128
    119293 4axf:A (2.93) BS01 ZN 2.7.1.158 GO:0005524 ... Q93YN9 22745128
    119294 4axf:A (2.93) BS02 ANP 2.7.1.158 GO:0005524 ... Q93YN9 22745128
    119295 4axf:A (2.93) BS03 4MY 2.7.1.158 GO:0005524 ... Q93YN9 22745128
    119296 4axg:B (2.8) BS01 peptide ? GO:0000339 ... P48598 22832024
    119297 4axs:A (2.5) BS01 SO4 ? GO:0005829 ... Q8EVF4 23082227
    119298 4axv:A (2.17) BS01 ZN 3.4.17.- GO:0004040 ... A7N805 22970852
    119299 4axw:A (2.23) BS01 CA ? GO:0005509 ... Q99PF4 23135401
    119300 4axw:A (2.23) BS02 CA ? GO:0005509 ... Q99PF4 23135401
    119301 4axw:A (2.23) BS03 CA ? GO:0005509 ... Q99PF4 23135401
    119302 4axw:A (2.23) BS04 CA ? GO:0005509 ... Q99PF4 23135401
    119303 4axw:B (2.23) BS01 CA ? GO:0005509 ... Q99PJ1 23135401
    119304 4axw:B (2.23) BS02 CA ? GO:0005509 ... Q99PJ1 23135401
    119305 4axw:B (2.23) BS03 CA ? GO:0005509 ... Q99PJ1 23135401
    119306 4axx:A (1.74) BS01 ADP 2.7.2.3 GO:0004618 ... P00558 39106858
    119307 4axx:A (1.74) BS02 BEF 2.7.2.3 GO:0004618 ... P00558 39106858
    119308 4ayb:A (3.202) BS01 ZN 2.7.7.6 GO:0000287 ... B8YB53 22848102
    119309 4ayb:A (3.202) BS02 ZN 2.7.7.6 GO:0000287 ... B8YB53 22848102
    119310 4ayb:A (3.202) BS03 ZN 2.7.7.6 GO:0000287 ... B8YB53 22848102
    119311 4ayb:A (3.202) BS04 MG 2.7.7.6 GO:0000287 ... B8YB53 22848102
    119312 4ayb:B (3.202) BS01 ZN 2.7.7.6 GO:0000428 ... B8YB55 22848102
    119313 4ayb:D (3.202) BS01 SF4 2.7.7.6 GO:0000428 ... B8YB56 22848102
    119314 4ayb:N (3.202) BS01 ZN 2.7.7.6 GO:0000428 ... B8YB63 22848102
    119315 4ayb:P (3.202) BS01 ZN 2.7.7.6 GO:0000428 ... B8YB64 22848102
    119316 4ayj:A (3.0) BS01 GAL N/A GO:0005975 ... N/A 23230506
    119317 4ayj:A (3.0) BS02 BGC N/A GO:0005975 ... N/A 23230506
    119318 4ayj:B (3.0) BS01 BGC N/A GO:0005975 ... N/A 23230506
    119319 4ayj:B (3.0) BS02 BGC N/A GO:0005975 ... N/A 23230506
    119320 4ayj:B (3.0) BS03 GAL N/A GO:0005975 ... N/A 23230506
    119321 4ayj:C (3.0) BS01 GAL N/A GO:0005975 ... N/A 23230506
    119322 4ayj:C (3.0) BS02 BGC N/A GO:0005975 ... N/A 23230506
    119323 4ayj:D (3.0) BS01 GAL N/A GO:0005975 ... N/A 23230506
    119324 4ayk:A (-1.00) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 10353819
    119325 4ayk:A (-1.00) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 10353819
    119326 4ayk:A (-1.00) BS03 CA 3.4.24.7 GO:0004222 ... P03956 10353819
    119327 4ayk:A (-1.00) BS04 CGS 3.4.24.7 GO:0004222 ... P03956 10353819 BindingDB: Ki=33nM, IC50=15nM
    119328 4ayl:A (1.919) BS01 CA N/A GO:0005975 ... N/A 23230506
    119329 4ayp:A (0.85) BS01 Z5L 3.2.1.113 GO:0004559 ... B0SWV2 23012075
    119330 4ayp:A (0.85) BS02 MAN 3.2.1.113 GO:0004559 ... B0SWV2 23012075
    119331 4ayq:A (1.1) BS01 MVL 3.2.1.113 GO:0004559 ... B0SWV2 23012075 MOAD: Kd=47nM
    PDBbind: -logKd/Ki=7.33, Kd=47nM
    119332 4ayr:A (1.1) BS01 IFL 3.2.1.113 GO:0004559 ... B0SWV2 23012075 MOAD: Kd=99nM
    PDBbind: -logKd/Ki=7.00, Kd=99nM
    119333 4ayr:A (1.1) BS02 IFL 3.2.1.113 GO:0004559 ... B0SWV2 23012075 MOAD: Kd=99nM
    PDBbind: -logKd/Ki=7.00, Kd=99nM
    119334 4ayt:A (2.85) BS01 GLY ? GO:0005524 ... Q9NRK6 23716676
    119335 4ayt:A (2.85) BS02 MG ? GO:0005524 ... Q9NRK6 23716676
    119336 4ayt:A (2.85) BS03 ACP ? GO:0005524 ... Q9NRK6 23716676 PDBbind: -logKd/Ki=3.70, Ki=0.2mM
    119337 4ayu:A (1.5) BS01 CA ? GO:0001849 ... P02743 25084341
    119338 4ayu:A (1.5) BS02 CA ? GO:0001849 ... P02743 25084341
    119339 4ayu:A (1.5) BS03 N8P ? GO:0001849 ... P02743 25084341 MOAD: Kd=18.6uM
    PDBbind: -logKd/Ki=4.73, Kd=18.6uM
    119340 4ayu:B (1.5) BS01 CA ? GO:0001849 ... P02743 25084341
    119341 4ayu:B (1.5) BS02 CA ? GO:0001849 ... P02743 25084341
    119342 4ayu:B (1.5) BS03 N8P ? GO:0001849 ... P02743 25084341 MOAD: Kd=18.6uM
    119343 4ayu:C (1.5) BS01 CA ? GO:0001849 ... P02743 25084341
    119344 4ayu:C (1.5) BS02 CA ? GO:0001849 ... P02743 25084341
    119345 4ayu:C (1.5) BS03 N8P ? GO:0001849 ... P02743 25084341 MOAD: Kd=18.6uM
    119346 4ayu:D (1.5) BS01 CA ? GO:0001849 ... P02743 25084341
    119347 4ayu:D (1.5) BS02 CA ? GO:0001849 ... P02743 25084341
    119348 4ayu:D (1.5) BS03 N8P ? GO:0001849 ... P02743 25084341 MOAD: Kd=18.6uM
    119349 4ayu:E (1.5) BS01 CA ? GO:0001849 ... P02743 25084341
    119350 4ayu:E (1.5) BS02 CA ? GO:0001849 ... P02743 25084341
    119351 4ayu:E (1.5) BS03 N8P ? GO:0001849 ... P02743 25084341 MOAD: Kd=18.6uM
    119352 4ayw:A (3.3) BS01 ANP ? GO:0005524 ... Q9NRK6 23716676 PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    119353 4ayw:A (3.3) BS02 Y01 ? GO:0005524 ... Q9NRK6 23716676
    119354 4ayx:A (2.9) BS01 GLY ? GO:0005524 ... Q9NRK6 23716676
    119355 4ayx:A (2.9) BS02 MG ? GO:0005524 ... Q9NRK6 23716676
    119356 4ayx:A (2.9) BS03 ACP ? GO:0005524 ... Q9NRK6 23716676 PDBbind: -logKd/Ki=3.70, Ki=0.2mM
    119357 4az4:A (1.8) BS01 CO 3.5.1.88 GO:0005515 ... P0A6K3 23072298
    119358 4aza:A (2.16) BS01 peptide ? GO:0000082 ... P06730 23094039
    119359 4aza:A (2.16) BS02 MGO ? GO:0000082 ... P06730 23094039
    119360 4aza:C (2.16) BS01 peptide ? GO:0000082 ... P06730 23094039
    119361 4aza:C (2.16) BS02 MGO ? GO:0000082 ... P06730 23094039
    119362 4azj:A (1.5) BS01 SEP 2.6.1.52 GO:0004648 ... Q9RME2 23633589
    119363 4azj:A (1.5) BS02 PLP 2.6.1.52 GO:0004648 ... Q9RME2 23633589
    119364 4azj:A (1.5) BS03 SEP 2.6.1.52 GO:0004648 ... Q9RME2 23633589
    119365 4azj:A (1.5) BS04 PLP 2.6.1.52 GO:0004648 ... Q9RME2 23633589
    119366 4azj:B (1.5) BS01 SEP 2.6.1.52 GO:0004648 ... Q9RME2 23633589
    119367 4azj:B (1.5) BS02 PLP 2.6.1.52 GO:0004648 ... Q9RME2 23633589
    119368 4azj:B (1.5) BS03 SEP 2.6.1.52 GO:0004648 ... Q9RME2 23633589
    119369 4azj:B (1.5) BS04 PLP 2.6.1.52 GO:0004648 ... Q9RME2 23633589
    119370 4azk:A (1.595) BS01 PLP 2.6.1.52 GO:0004648 ... Q9RME2 23633589
    119371 4azk:A (1.595) BS02 PLP 2.6.1.52 GO:0004648 ... Q9RME2 23633589
    119372 4azk:B (1.595) BS01 PLP 2.6.1.52 GO:0004648 ... Q9RME2 23633589
    119373 4azk:B (1.595) BS02 PLP 2.6.1.52 GO:0004648 ... Q9RME2 23633589
    119374 4azl:A (2.8) BS01 78M ? GO:0009279 ... P18895 25084326
    119375 4azl:A (2.8) BS02 78M ? GO:0009279 ... P18895 25084326
    119376 4azl:A (2.8) BS03 78M ? GO:0009279 ... P18895 25084326
    119377 4azl:A (2.8) BS04 CA ? GO:0009279 ... P18895 25084326
    119378 4azl:A (2.8) BS05 78N ? GO:0009279 ... P18895 25084326
    119379 4azl:A (2.8) BS06 78N ? GO:0009279 ... P18895 25084326
    119380 4azl:A (2.8) BS07 78N ? GO:0009279 ... P18895 25084326
    119381 4azl:B (2.8) BS01 78M ? GO:0009279 ... P18895 25084326
    119382 4azl:B (2.8) BS02 78M ? GO:0009279 ... P18895 25084326
    119383 4azl:B (2.8) BS03 78M ? GO:0009279 ... P18895 25084326
    119384 4azl:B (2.8) BS04 78M ? GO:0009279 ... P18895 25084326
    119385 4azl:B (2.8) BS05 CA ? GO:0009279 ... P18895 25084326
    119386 4azl:B (2.8) BS06 78M ? GO:0009279 ... P18895 25084326
    119387 4azl:B (2.8) BS07 78M ? GO:0009279 ... P18895 25084326
    119388 4azm:A (2.75) BS01 T4B ? GO:0001972 ... Q01469 24531463 BindingDB: Ki=350nM
    119389 4azm:A (2.75) BS02 T4B ? GO:0001972 ... Q01469 24531463 BindingDB: Ki=350nM
    119390 4azm:B (2.75) BS01 T4B ? GO:0001972 ... Q01469 24531463 BindingDB: Ki=350nM
    119391 4azm:B (2.75) BS02 T4B ? GO:0001972 ... Q01469 24531463 BindingDB: Ki=350nM
    119392 4azp:A (2.1) BS01 A9M ? GO:0001972 ... Q05816 24531463 MOAD: Ki=1.26uM
    PDBbind: -logKd/Ki=5.90, IC50=1.26uM
    119393 4azq:A (2.0) BS01 G2A ? GO:0001972 ... Q05816 24531463
    119394 4azr:A (2.95) BS01 A9M ? GO:0001972 ... Q01469 24531463
    119395 4azr:A (2.95) BS02 A9M ? GO:0001972 ... Q01469 24531463
    119396 4azr:B (2.95) BS01 A9M ? GO:0001972 ... Q01469 24531463
    119397 4azr:B (2.95) BS02 A9M ? GO:0001972 ... Q01469 24531463
    119398 4azu:A (1.9) BS01 CU ? GO:0005507 ... P00282 1942029
    119399 4azu:B (1.9) BS01 CU ? GO:0005507 ... P00282 1942029
    119400 4azu:C (1.9) BS01 CU ? GO:0005507 ... P00282 1942029
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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