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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    104601 3qmn:E (1.85) BS02 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104602 3qmn:E (1.85) BS03 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104603 3qmn:F (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104604 3qmn:F (1.85) BS02 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104605 3qmn:F (1.85) BS03 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104606 3qmn:G (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104607 3qmn:G (1.85) BS02 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104608 3qmn:G (1.85) BS03 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104609 3qmn:H (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104610 3qmn:H (1.85) BS02 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104611 3qmn:H (1.85) BS03 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104612 3qmn:I (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104613 3qmn:I (1.85) BS02 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104614 3qmn:I (1.85) BS03 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104615 3qmn:J (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104616 3qmn:J (1.85) BS02 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104617 3qmn:J (1.85) BS03 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104618 3qmn:K (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104619 3qmn:K (1.85) BS02 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104620 3qmn:K (1.85) BS03 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104621 3qmn:L (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104622 3qmn:L (1.85) BS02 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104623 3qmn:L (1.85) BS03 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104624 3qmn:M (1.85) BS01 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104625 3qmn:M (1.85) BS02 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104626 3qmn:M (1.85) BS03 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104627 3qmn:N (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104628 3qmn:N (1.85) BS02 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104629 3qmn:N (1.85) BS03 A3P 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104630 3qmn:O (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104631 3qmn:O (1.85) BS02 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104632 3qmn:O (1.85) BS03 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104633 3qmn:O (1.85) BS04 A3P 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104634 3qmn:P (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104635 3qmn:P (1.85) BS02 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104636 3qmn:P (1.85) BS03 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104637 3qmn:Q (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104638 3qmn:Q (1.85) BS02 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104639 3qmn:Q (1.85) BS03 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104640 3qmn:Q (1.85) BS04 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104641 3qmn:R (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104642 3qmn:R (1.85) BS02 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104643 3qmn:R (1.85) BS03 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104644 3qmn:S (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104645 3qmn:S (1.85) BS02 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104646 3qmn:S (1.85) BS03 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104647 3qmn:T (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104648 3qmn:T (1.85) BS02 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104649 3qmn:T (1.85) BS03 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104650 3qmn:U (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104651 3qmn:U (1.85) BS02 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104652 3qmn:U (1.85) BS03 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104653 3qmn:V (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104654 3qmn:V (1.85) BS02 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104655 3qmn:W (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104656 3qmn:W (1.85) BS02 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104657 3qmn:W (1.85) BS03 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104658 3qmn:X (1.85) BS01 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104659 3qmn:X (1.85) BS02 COA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104660 3qmn:X (1.85) BS03 CA 2.7.8.7 GO:0000287 ... Q9KPB6 22993090
    104661 3qmo:A (3.0) BS01 NS4 1.14.99.1 GO:0001516 ... Q05769 21843643 BindingDB: IC50=22nM
    104662 3qmo:A (3.0) BS02 HEM 1.14.99.1 GO:0001516 ... Q05769 21843643
    104663 3qmo:B (3.0) BS01 NS4 1.14.99.1 GO:0001516 ... Q05769 21843643 BindingDB: IC50=22nM
    104664 3qmo:B (3.0) BS02 HEM 1.14.99.1 GO:0001516 ... Q05769 21843643
    104665 3qmr:A (1.3213) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 23030629
    104666 3qmr:A (1.3213) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 23030629
    104667 3qmr:B (1.3213) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 23030629
    104668 3qmr:B (1.3213) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 23030629
    104669 3qms:A (1.32) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 23030629
    104670 3qms:A (1.32) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 23030629
    104671 3qms:B (1.32) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 23030629
    104672 3qms:B (1.32) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 23030629
    104673 3qmt:A (1.3202) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 23030629
    104674 3qmt:A (1.3202) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 23030629
    104675 3qmt:B (1.3202) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 23030629
    104676 3qmt:B (1.3202) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 23030629
    104677 3qn1:A (1.8) BS01 A8S ? GO:0004864 ... O49686 21357183
    104678 3qn3:A (2.13) BS01 MG 4.2.1.11 GO:0000015 ... P42448 N/A
    104679 3qn3:B (2.13) BS01 MG 4.2.1.11 GO:0000015 ... P42448 N/A
    104680 3qn3:C (2.13) BS01 MG 4.2.1.11 GO:0000015 ... P42448 N/A
    104681 3qn3:D (2.13) BS01 MG 4.2.1.11 GO:0000015 ... P42448 N/A
    104682 3qnd:A (2.4) BS01 ZN ? GO:0007155 ... Q64823 21648036
    104683 3qnd:A (2.4) BS02 SIA ? GO:0007155 ... Q64823 21648036 PDBbind: -logKd/Ki=4.85, Kd=14uM
    104684 3qnd:B (2.4) BS01 ZN ? GO:0007155 ... Q64823 21648036
    104685 3qnd:B (2.4) BS02 SIA ? GO:0007155 ... Q64823 21648036
    104686 3qnd:C (2.4) BS01 ZN ? GO:0007155 ... Q64823 21648036
    104687 3qnd:C (2.4) BS02 SIA ? GO:0007155 ... Q64823 21648036 PDBbind: -logKd/Ki=4.85, Kd=14uM
    104688 3qnd:E (2.4) BS01 ZN ? GO:0007155 ... Q64823 21648036
    104689 3qnd:E (2.4) BS02 SIA ? GO:0007155 ... Q64823 21648036
    104690 3qnd:F (2.4) BS01 ZN ? GO:0007155 ... Q64823 21648036
    104691 3qnd:F (2.4) BS02 SIA ? GO:0007155 ... Q64823 21648036
    104692 3qnd:G (2.4) BS01 ZN ? GO:0007155 ... Q64823 21648036
    104693 3qnd:G (2.4) BS02 SIA ? GO:0007155 ... Q64823 21648036
    104694 3qnf:A (3.0) BS01 ZN 3.4.11.- GO:0001525 ... Q9NZ08 21508329
    104695 3qnf:B (3.0) BS01 ZN 3.4.11.- GO:0001525 ... Q9NZ08 21508329
    104696 3qnf:C (3.0) BS01 ZN 3.4.11.- GO:0001525 ... Q9NZ08 21508329
    104697 3qng:A (1.55) BS01 REJ 3.2.1.17 GO:0003796 ... P00698 22229733
    104698 3qnl:A (1.77) BS01 ROA ? GO:0004623 ... P58399 22205953
    104699 3qnq:A (3.295) BS01 ZDM 2.7.1.69 GO:0005886 ... Q72XQ0 21471968
    104700 3qnq:A (3.295) BS02 ZDM 2.7.1.69 GO:0005886 ... Q72XQ0 21471968
    104701 3qnq:B (3.295) BS01 ZDM 2.7.1.69 GO:0005886 ... Q72XQ0 21471968
    104702 3qnq:B (3.295) BS02 ZDM 2.7.1.69 GO:0005886 ... Q72XQ0 21471968
    104703 3qnq:C (3.295) BS01 ZDM 2.7.1.69 GO:0005886 ... Q72XQ0 21471968
    104704 3qnq:C (3.295) BS02 ZDM 2.7.1.69 GO:0005886 ... Q72XQ0 21471968
    104705 3qnq:D (3.295) BS01 ZDM 2.7.1.69 GO:0005886 ... Q72XQ0 21471968
    104706 3qnq:D (3.295) BS02 ZDM 2.7.1.69 GO:0005886 ... Q72XQ0 21471968
    104707 3qnr:A (2.25) BS01 HEM ? GO:0004601 ... Q0SE24 21534572
    104708 3qnr:B (2.25) BS01 HEM ? GO:0004601 ... Q0SE24 21534572
    104709 3qnr:C (2.25) BS01 HEM ? GO:0004601 ... Q0SE24 21534572
    104710 3qns:A (1.4) BS01 HEM ? GO:0004601 ... Q0SE24 21534572
    104711 3qo7:A (2.55) BS01 ATP 6.1.1.11 GO:0000166 ... Q9HGT6 21825144
    104712 3qo8:A (2.0) BS01 SSA 6.1.1.11 GO:0000166 ... Q9HGT6 21825144
    104713 3qo8:A (2.0) BS02 MG 6.1.1.11 GO:0000166 ... Q9HGT6 21825144
    104714 3qo8:A (2.0) BS03 SSA 6.1.1.11 GO:0000166 ... Q9HGT6 21825144
    104715 3qoa:A (2.1) BS01 HEM 1.14.13.- GO:0004497 ... P20813 21875942
    104716 3qoa:A (2.1) BS02 3QO 1.14.13.- GO:0004497 ... P20813 21875942 MOAD: Kd=0.21uM
    104717 3qob:A (1.6) BS01 HEM ? GO:0001666 ... P02213 22171006
    104718 3qob:B (1.6) BS01 HEM ? GO:0001666 ... P02213 22171006
    104719 3qob:B (1.6) BS02 HEM ? GO:0001666 ... P02213 22171006
    104720 3qom:A (1.498) BS01 BGC 3.2.1.86 GO:0004553 ... F9UU25 23519420
    104721 3qom:A (1.498) BS02 PO4 3.2.1.86 GO:0004553 ... F9UU25 23519420
    104722 3qom:A (1.498) BS03 PO4 3.2.1.86 GO:0004553 ... F9UU25 23519420
    104723 3qom:A (1.498) BS04 PO4 3.2.1.86 GO:0004553 ... F9UU25 23519420
    104724 3qop:A (1.96) BS01 CMP ? GO:0003677 ... P0ACJ8 N/A
    104725 3qop:B (1.96) BS01 CMP ? GO:0003677 ... P0ACJ8 N/A
    104726 3qou:A (1.8) BS01 CA ? GO:0005515 ... P77395 21498507
    104727 3qpb:A (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104728 3qpb:A (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    104729 3qpb:A (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    104730 3qpb:B (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104731 3qpb:B (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    104732 3qpb:B (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    104733 3qpb:C (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104734 3qpb:C (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    104735 3qpb:C (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    104736 3qpb:D (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104737 3qpb:D (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    104738 3qpb:D (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    104739 3qpb:E (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104740 3qpb:E (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    104741 3qpb:E (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    104742 3qpb:F (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104743 3qpb:F (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    104744 3qpb:F (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    104745 3qpb:G (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104746 3qpb:G (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    104747 3qpb:G (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    104748 3qpb:H (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104749 3qpb:H (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    104750 3qpb:H (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    104751 3qpb:I (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104752 3qpb:I (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    104753 3qpb:I (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    104754 3qpb:J (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104755 3qpb:J (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    104756 3qpb:J (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    104757 3qpb:K (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104758 3qpb:K (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    104759 3qpb:K (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    104760 3qpb:L (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104761 3qpb:L (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    104762 3qpb:L (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    104763 3qpb:M (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104764 3qpb:M (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    104765 3qpb:M (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    104766 3qpb:N (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104767 3qpb:N (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    104768 3qpb:N (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    104769 3qpb:O (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104770 3qpb:O (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    104771 3qpb:O (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    104772 3qpb:P (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104773 3qpb:P (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    104774 3qpb:P (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    104775 3qpb:Q (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104776 3qpb:Q (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    104777 3qpb:R (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    104778 3qpb:R (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    104779 3qpb:R (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    104780 3qpg:A (1.79) BS01 3QP 2.6.1.1 GO:0003824 ... P00509 21627105
    104781 3qpk:A (1.9) BS01 CU 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    104782 3qpk:A (1.9) BS02 CU 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    104783 3qpk:A (1.9) BS03 CU 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    104784 3qpk:A (1.9) BS04 CU 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    104785 3qpk:A (1.9) BS05 XE 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    104786 3qpk:A (1.9) BS06 XE 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    104787 3qpk:A (1.9) BS07 XE 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    104788 3qpk:B (1.9) BS01 CU 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    104789 3qpk:B (1.9) BS02 CU 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    104790 3qpk:B (1.9) BS03 CU 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    104791 3qpk:B (1.9) BS04 CU 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    104792 3qpk:B (1.9) BS05 XE 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    104793 3qpk:B (1.9) BS06 XE 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    104794 3qpk:B (1.9) BS07 XE 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    104795 3qpu:A (2.3) BS01 POP 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 22275052
    104796 3qpu:A (2.3) BS02 POP 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 22275052
    104797 3qpu:A (2.3) BS03 POP 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 22275052
    104798 3qpv:A (2.5) BS01 FDP 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 22275052
    104799 3qpv:A (2.5) BS02 PHS 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 22275052
    104800 3qpv:A (2.5) BS03 ADP 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 22275052
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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