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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    103801 3q09:J (3.0) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103802 3q09:J (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103803 3q09:K (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103804 3q09:K (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103805 3q09:L (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103806 3q09:L (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103807 3q09:M (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103808 3q09:M (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103809 3q09:N (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103810 3q09:N (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103811 3q09:O (3.0) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103812 3q09:O (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103813 3q09:O (3.0) BS03 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103814 3q09:P (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103815 3q09:P (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103816 3q09:Q (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103817 3q09:Q (3.0) BS02 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103818 3q09:Q (3.0) BS03 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103819 3q09:R (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103820 3q09:R (3.0) BS02 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103821 3q09:R (3.0) BS03 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103822 3q09:S (3.0) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103823 3q09:S (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103824 3q09:S (3.0) BS03 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103825 3q09:T (3.0) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103826 3q09:T (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103827 3q09:T (3.0) BS03 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    103828 3q0g:C (2.38) BS01 COA 4.2.1.17 GO:0003824 ... P9WNN9 N/A
    103829 3q0g:D (2.38) BS01 BCO 4.2.1.17 GO:0003824 ... P9WNN9 N/A
    103830 3q0g:F (2.38) BS01 BCO 4.2.1.17 GO:0003824 ... P9WNN9 N/A
    103831 3q0j:C (2.4) BS01 CAA 4.2.1.17 GO:0003824 ... P9WNN9 N/A
    103832 3q0j:F (2.4) BS01 CAA 4.2.1.17 GO:0003824 ... P9WNN9 N/A
    103833 3q0t:A (2.401) BS01 LGE 3.4.14.5 GO:0001618 ... P27487 N/A BindingDB: Ki=2.7nM
    103834 3q0t:B (2.401) BS01 LGE 3.4.14.5 GO:0001618 ... P27487 N/A BindingDB: Ki=2.7nM
    103835 3q0u:A (1.7) BS01 LL3 ? GO:0000976 ... P9WMC1 N/A BindingDB: IC50=5600nM
    103836 3q0v:A (1.95) BS01 LL4 ? GO:0000976 ... P9WMC1 N/A BindingDB: IC50=900nM
    103837 3q0v:B (1.95) BS01 LL4 ? GO:0000976 ... P9WMC1 N/A BindingDB: IC50=900nM
    103838 3q0w:A (1.6) BS01 LL5 ? GO:0000976 ... P9WMC1 22156370
    103839 3q10:A (1.83) BS01 AMP 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    103840 3q10:B (1.83) BS01 AMP 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    103841 3q10:C (1.83) BS01 AMP 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    103842 3q10:D (1.83) BS01 AMP 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    103843 3q12:A (1.58) BS01 PAF 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    103844 3q12:B (1.58) BS01 PAF 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    103845 3q12:C (1.58) BS01 PAF 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    103846 3q12:D (1.58) BS01 PAF 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    103847 3q15:C (2.192) BS01 MG 2.7.-.- GO:0000160 ... P06628 21346797
    103848 3q15:D (2.192) BS01 MG 2.7.-.- GO:0000160 ... P06628 21346797
    103849 3q19:A (1.9) BS01 GSH 1.20.4.2
    1.8.5.1
    2.5.1.18    		 GO:0004364 ... Q9H4Y5 22522127
    103850 3q19:B (1.9) BS01 GSH 1.20.4.2
    1.8.5.1
    2.5.1.18    		 GO:0004364 ... Q9H4Y5 22522127
    103851 3q1g:A (2.5) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103852 3q1g:A (2.5) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103853 3q1g:B (2.5) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103854 3q1g:B (2.5) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103855 3q1g:C (2.5) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103856 3q1g:C (2.5) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103857 3q1g:D (2.5) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103858 3q1g:D (2.5) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103859 3q1k:A (2.202) BS01 ADP 6.3.2.4 GO:0003824 ... P0A1F0 N/A
    103860 3q1k:B (2.202) BS01 ADP 6.3.2.4 GO:0003824 ... P0A1F0 N/A
    103861 3q1k:C (2.202) BS01 ADP 6.3.2.4 GO:0003824 ... P0A1F0 N/A
    103862 3q1k:D (2.202) BS01 ADP 6.3.2.4 GO:0003824 ... P0A1F0 N/A
    103863 3q1q:A (3.8) BS01 rna 3.1.26.5 GO:0000049 ... Q9X1H4 21076397
    103864 3q1r:A (4.21) BS01 rna 3.1.26.5 GO:0000049 ... Q9X1H4 21076397
    103865 3q1x:A (1.59) BS01 SER 2.3.1.30 GO:0005829 ... Q9U8X2 21297164 PDBbind: -logKd/Ki=5.33, Ki=4.7uM
    103866 3q25:A (1.9) BS01 GLC ? GO:0005515 ... P0AEX9
    P37840    		 21462277
    103867 3q25:A (1.9) BS02 GLC ? GO:0005515 ... P0AEX9
    P37840    		 21462277
    103868 3q26:A (1.54) BS01 GLC ? GO:0005515 ... P0AEX9
    P37840    		 21462277
    103869 3q26:A (1.54) BS02 GLC ? GO:0005515 ... P0AEX9
    P37840    		 21462277
    103870 3q27:A (1.302) BS01 GLC ? GO:0005515 ... P0AEX9
    P37840    		 21462277
    103871 3q27:A (1.302) BS02 GLC ? GO:0005515 ... P0AEX9
    P37840    		 21462277
    103872 3q28:A (1.6) BS01 GLC ? GO:0005515 ... P0AEX9
    P37840    		 21462277
    103873 3q28:A (1.6) BS02 GLC ? GO:0005515 ... P0AEX9
    P37840    		 21462277
    103874 3q29:A (2.3) BS01 GLC ? GO:0005515 ... P0AEX9
    P37840    		 21462277
    103875 3q29:A (2.3) BS02 GLC ? GO:0005515 ... P0AEX9
    P37840    		 21462277
    103876 3q29:C (2.3) BS01 GLC ? GO:0005515 ... P0AEX9
    P37840    		 21462277
    103877 3q29:C (2.3) BS02 GLC ? GO:0005515 ... P0AEX9
    P37840    		 21462277
    103878 3q2d:A (2.19) BS01 3NY N/A GO:0004139 ... N/A 21277311
    103879 3q2d:B (2.19) BS01 3NY N/A GO:0004139 ... N/A 21277311
    103880 3q2l:A (2.7) BS01 CA ? GO:0005509 ... P09803 21300292
    103881 3q2l:A (2.7) BS02 CA ? GO:0005509 ... P09803 21300292
    103882 3q2l:A (2.7) BS03 CA ? GO:0005509 ... P09803 21300292
    103883 3q2l:A (2.7) BS04 CA ? GO:0005509 ... P09803 21300292
    103884 3q2l:B (2.7) BS01 CA ? GO:0005509 ... P09803 21300292
    103885 3q2l:B (2.7) BS02 CA ? GO:0005509 ... P09803 21300292
    103886 3q2l:B (2.7) BS03 CA ? GO:0005509 ... P09803 21300292
    103887 3q2l:B (2.7) BS04 CA ? GO:0005509 ... P09803 21300292
    103888 3q2n:A (2.73) BS01 CA ? GO:0005509 ... P09803 21300292
    103889 3q2n:A (2.73) BS02 CA ? GO:0005509 ... P09803 21300292
    103890 3q2n:A (2.73) BS03 CA ? GO:0005509 ... P09803 21300292
    103891 3q2n:A (2.73) BS04 CA ? GO:0005509 ... P09803 21300292
    103892 3q2n:B (2.73) BS01 CA ? GO:0005509 ... P09803 21300292
    103893 3q2n:B (2.73) BS02 CA ? GO:0005509 ... P09803 21300292
    103894 3q2n:B (2.73) BS03 CA ? GO:0005509 ... P09803 21300292
    103895 3q2n:B (2.73) BS04 CA ? GO:0005509 ... P09803 21300292
    103896 3q2r:A (2.2) BS01 ZN ? GO:0005576 ... P48060 21931216
    103897 3q2t:A (3.061) BS01 rna ? GO:0003682 ... O43809 21295486
    103898 3q2t:B (3.061) BS01 rna ? GO:0003682 ... O43809 21295486
    103899 3q2v:A (3.4) BS01 CA ? GO:0005509 ... P09803 21300292
    103900 3q2v:A (3.4) BS02 CA ? GO:0005509 ... P09803 21300292
    103901 3q2v:A (3.4) BS03 CA ? GO:0005509 ... P09803 21300292
    103902 3q2v:A (3.4) BS04 CA ? GO:0005509 ... P09803 21300292
    103903 3q2v:A (3.4) BS05 CA ? GO:0005509 ... P09803 21300292
    103904 3q2v:A (3.4) BS06 CA ? GO:0005509 ... P09803 21300292
    103905 3q2v:A (3.4) BS07 CA ? GO:0005509 ... P09803 21300292
    103906 3q2v:A (3.4) BS08 CA ? GO:0005509 ... P09803 21300292
    103907 3q2v:A (3.4) BS09 CA ? GO:0005509 ... P09803 21300292
    103908 3q2v:A (3.4) BS10 CA ? GO:0005509 ... P09803 21300292
    103909 3q2v:A (3.4) BS11 CA ? GO:0005509 ... P09803 21300292
    103910 3q2v:A (3.4) BS12 CA ? GO:0005509 ... P09803 21300292
    103911 3q2v:A (3.4) BS13 MAN ? GO:0005509 ... P09803 21300292
    103912 3q2v:A (3.4) BS14 MAN ? GO:0005509 ... P09803 21300292
    103913 3q2v:A (3.4) BS15 MAN ? GO:0005509 ... P09803 21300292
    103914 3q2v:A (3.4) BS16 MAN ? GO:0005509 ... P09803 21300292
    103915 3q2v:A (3.4) BS17 MAN ? GO:0005509 ... P09803 21300292
    103916 3q2v:A (3.4) BS18 MAN ? GO:0005509 ... P09803 21300292
    103917 3q2v:B (3.4) BS01 CA ? GO:0005509 ... P09803 21300292
    103918 3q2v:B (3.4) BS02 CA ? GO:0005509 ... P09803 21300292
    103919 3q2v:B (3.4) BS03 CA ? GO:0005509 ... P09803 21300292
    103920 3q2v:B (3.4) BS04 CA ? GO:0005509 ... P09803 21300292
    103921 3q2v:B (3.4) BS05 CA ? GO:0005509 ... P09803 21300292
    103922 3q2v:B (3.4) BS06 CA ? GO:0005509 ... P09803 21300292
    103923 3q2v:B (3.4) BS07 CA ? GO:0005509 ... P09803 21300292
    103924 3q2v:B (3.4) BS08 CA ? GO:0005509 ... P09803 21300292
    103925 3q2v:B (3.4) BS09 CA ? GO:0005509 ... P09803 21300292
    103926 3q2v:B (3.4) BS10 CA ? GO:0005509 ... P09803 21300292
    103927 3q2v:B (3.4) BS11 CA ? GO:0005509 ... P09803 21300292
    103928 3q2v:B (3.4) BS12 CA ? GO:0005509 ... P09803 21300292
    103929 3q2v:B (3.4) BS13 MAN ? GO:0005509 ... P09803 21300292
    103930 3q2v:B (3.4) BS14 MAN ? GO:0005509 ... P09803 21300292
    103931 3q2v:B (3.4) BS15 MAN ? GO:0005509 ... P09803 21300292
    103932 3q2v:B (3.4) BS16 MAN ? GO:0005509 ... P09803 21300292
    103933 3q2v:B (3.4) BS17 MAN ? GO:0005509 ... P09803 21300292
    103934 3q2v:B (3.4) BS18 MAN ? GO:0005509 ... P09803 21300292
    103935 3q2w:A (3.2) BS01 CA ? GO:0005509 ... P15116 21300292
    103936 3q2w:A (3.2) BS02 CA ? GO:0005509 ... P15116 21300292
    103937 3q2w:A (3.2) BS03 CA ? GO:0005509 ... P15116 21300292
    103938 3q2w:A (3.2) BS04 CA ? GO:0005509 ... P15116 21300292
    103939 3q2w:A (3.2) BS05 CA ? GO:0005509 ... P15116 21300292
    103940 3q2w:A (3.2) BS06 CA ? GO:0005509 ... P15116 21300292
    103941 3q2w:A (3.2) BS07 CA ? GO:0005509 ... P15116 21300292
    103942 3q2w:A (3.2) BS08 CA ? GO:0005509 ... P15116 21300292
    103943 3q2w:A (3.2) BS09 CA ? GO:0005509 ... P15116 21300292
    103944 3q2w:A (3.2) BS10 CA ? GO:0005509 ... P15116 21300292
    103945 3q2w:A (3.2) BS11 CA ? GO:0005509 ... P15116 21300292
    103946 3q2w:A (3.2) BS12 CA ? GO:0005509 ... P15116 21300292
    103947 3q2w:A (3.2) BS13 MAN ? GO:0005509 ... P15116 21300292
    103948 3q2w:A (3.2) BS14 MAN ? GO:0005509 ... P15116 21300292
    103949 3q2w:A (3.2) BS15 MAN ? GO:0005509 ... P15116 21300292
    103950 3q2w:A (3.2) BS16 MAN ? GO:0005509 ... P15116 21300292
    103951 3q2w:A (3.2) BS17 MAN ? GO:0005509 ... P15116 21300292
    103952 3q2w:A (3.2) BS18 MAN ? GO:0005509 ... P15116 21300292
    103953 3q31:A (2.703) BS01 ZN 4.2.1.1 GO:0004089 ... Q2TWF5 N/A
    103954 3q31:B (2.703) BS01 ZN 4.2.1.1 GO:0004089 ... Q2TWF5 N/A
    103955 3q33:A (2.8) BS01 peptide 2.3.1.48 GO:0000785 ... Q07794 21256037
    103956 3q33:A (2.8) BS02 ACO 2.3.1.48 GO:0000785 ... Q07794 21256037
    103957 3q33:B (2.8) BS01 peptide ? GO:0005634 ... P53853 21256037
    103958 3q35:A (3.3) BS01 ACO 2.3.1.48 GO:0000785 ... Q07794 21256037
    103959 3q3b:A (2.7) BS01 55E 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 21295469 PDBbind: -logKd/Ki=7.76, IC50=17.2nM
    103960 3q3b:B (2.7) BS01 55E 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 21295469
    103961 3q3l:A (2.5) BS01 CA 3.6.1.1 GO:0000287 ... H2L2L6 23192028
    103962 3q3l:B (2.5) BS01 CA 3.6.1.1 GO:0000287 ... H2L2L6 23192028
    103963 3q3l:C (2.5) BS01 CA 3.6.1.1 GO:0000287 ... H2L2L6 23192028
    103964 3q3l:D (2.5) BS01 CA 3.6.1.1 GO:0000287 ... H2L2L6 23192028
    103965 3q3l:E (2.5) BS01 CA 3.6.1.1 GO:0000287 ... H2L2L6 23192028
    103966 3q3l:F (2.5) BS01 CA 3.6.1.1 GO:0000287 ... H2L2L6 23192028
    103967 3q3s:A (2.0) BS01 O8B ? GO:0000976 ... P9WMC1 N/A BindingDB: EC50=>10000nM
    103968 3q46:A (0.99) BS01 MG 3.6.1.1 GO:0000287 ... H2L2L6 23192028
    103969 3q46:A (0.99) BS02 MG 3.6.1.1 GO:0000287 ... H2L2L6 23192028
    103970 3q4g:A (2.4) BS01 CA 6.3.1.5 GO:0003952 ... Q9KMW1 N/A
    103971 3q4j:B (2.3) BS01 peptide 2.7.7.7 GO:0003677 ... P0A988 21619076
    103972 3q4j:C (2.3) BS01 peptide 2.7.7.7 GO:0003677 ... P0A988 21619076
    103973 3q4j:D (2.3) BS01 peptide 2.7.7.7 GO:0003677 ... P0A988 21619076
    103974 3q4j:E (2.3) BS01 peptide 2.7.7.7 GO:0003677 ... P0A988 21619076
    103975 3q4j:F (2.3) BS01 peptide 2.7.7.7 GO:0003677 ... P0A988 21619076
    103976 3q4k:A (2.6) BS01 peptide 2.7.7.7 GO:0003677 ... P0A988 21619076
    103977 3q4k:B (2.6) BS01 peptide 2.7.7.7 GO:0003677 ... P0A988 21619076
    103978 3q4l:A (1.95) BS01 peptide 2.7.7.7 GO:0003677 ... P0A988 21619076
    103979 3q4l:B (1.95) BS01 peptide 2.7.7.7 GO:0003677 ... P0A988 21619076
    103980 3q4t:A (1.96) BS01 TAK 2.7.11.30 GO:0004672 ... P27037 25368322
    103981 3q4t:B (1.96) BS01 TAK 2.7.11.30 GO:0004672 ... P27037 25368322
    103982 3q4u:A (1.82) BS01 LDN 2.7.11.30 GO:0004672 ... Q04771 23646137 BindingDB: IC50=17nM
    103983 3q4u:A (1.82) BS02 LDN 2.7.11.30 GO:0004672 ... Q04771 23646137 BindingDB: IC50=17nM
    103984 3q4u:B (1.82) BS01 LDN 2.7.11.30 GO:0004672 ... Q04771 23646137 BindingDB: IC50=17nM
    103985 3q4u:C (1.82) BS01 LDN 2.7.11.30 GO:0004672 ... Q04771 23646137 BindingDB: IC50=17nM
    103986 3q4u:D (1.82) BS01 LDN 2.7.11.30 GO:0004672 ... Q04771 23646137 BindingDB: IC50=17nM
    103987 3q4w:A (1.441) BS01 CA 3.6.1.1 GO:0000287 ... H2L2L6 23192028
    103988 3q4w:A (1.441) BS02 CA 3.6.1.1 GO:0000287 ... H2L2L6 23192028
    103989 3q4w:A (1.441) BS03 POP 3.6.1.1 GO:0000287 ... H2L2L6 23192028
    103990 3q4y:A (2.3) BS01 CA 3.1.1.4 GO:0004623 ... P60045 N/A
    103991 3q5f:A (2.96) BS01 dna ? GO:0003677 ... P40676 21550983
    103992 3q5f:A (2.96) BS02 dna ? GO:0003677 ... P40676 21550983
    103993 3q5f:B (2.96) BS01 dna ? GO:0003677 ... P40676 21550983
    103994 3q5f:B (2.96) BS02 dna ? GO:0003677 ... P40676 21550983
    103995 3q5i:A (2.1) BS01 CA 2.7.11.1 GO:0004672 ... A0A509AHB6 N/A
    103996 3q5i:A (2.1) BS02 CA 2.7.11.1 GO:0004672 ... A0A509AHB6 N/A
    103997 3q5i:A (2.1) BS03 CA 2.7.11.1 GO:0004672 ... A0A509AHB6 N/A
    103998 3q5i:A (2.1) BS04 CA 2.7.11.1 GO:0004672 ... A0A509AHB6 N/A
    103999 3q5i:A (2.1) BS05 CA 2.7.11.1 GO:0004672 ... A0A509AHB6 N/A
    104000 3q5i:A (2.1) BS06 CA 2.7.11.1 GO:0004672 ... A0A509AHB6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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