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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    82401 3f5x:A (2.4) BS01 EZV 2.7.11.22 GO:0000082 ... P24941 19097791 MOAD: ic50=1040nM
    82402 3f5x:C (2.4) BS01 EZV 2.7.11.22 GO:0000082 ... P24941 19097791 MOAD: ic50=1040nM
    82403 3f64:A (1.95) BS01 LEC ? GO:0009289 ... Q99003 24833052
    82404 3f6j:A (1.75) BS01 MBG ? GO:0009289 ... Q99003 24833052
    82405 3f6k:A (2.0) BS01 peptide ? GO:0016020 ... Q99523 19122660
    82406 3f70:A (2.1) BS01 MLZ ? GO:0005634 ... Q969R5 19233876 MOAD: Kd=14uM
    PDBbind: -logKd/Ki=4.85, Kd=14uM
    82407 3f70:B (2.1) BS01 MLZ ? GO:0005634 ... Q969R5 19233876 MOAD: Kd=14uM
    82408 3f7b:A (2.05) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 20363633
    82409 3f7b:A (2.05) BS02 AG5 4.2.1.1 GO:0004089 ... P22748 20363633 MOAD: ic50=64nM
    PDBbind: -logKd/Ki=7.19, IC50=64nM
    BindingDB: IC50=64nM
    82410 3f7b:B (2.05) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 20363633
    82411 3f7b:B (2.05) BS02 AG5 4.2.1.1 GO:0004089 ... P22748 20363633 MOAD: ic50=64nM
    BindingDB: IC50=64nM
    82412 3f7n:A (2.0) BS01 MN ? GO:0000156 ... P0AE67 19646451
    82413 3f7n:A (2.0) BS02 BEF ? GO:0000156 ... P0AE67 19646451
    82414 3f7n:B (2.0) BS01 MN ? GO:0000156 ... P0AE67 19646451
    82415 3f7n:B (2.0) BS02 BEF ? GO:0000156 ... P0AE67 19646451
    82416 3f7t:A (1.8) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 19569147
    82417 3f7t:A (1.8) BS02 POP 1.17.7.4 GO:0005829 ... P62623 19569147
    82418 3f7t:B (1.8) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 19569147
    82419 3f7t:B (1.8) BS02 POP 1.17.7.4 GO:0005829 ... P62623 19569147
    82420 3f7u:A (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 20363633
    82421 3f7u:A (2.0) BS02 AG4 4.2.1.1 GO:0004089 ... P22748 20363633 MOAD: ic50=246nM
    PDBbind: -logKd/Ki=6.61, IC50=246nM
    BindingDB: IC50=246nM
    82422 3f7u:B (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 20363633
    82423 3f7u:B (2.0) BS02 AG4 4.2.1.1 GO:0004089 ... P22748 20363633 MOAD: ic50=246nM
    BindingDB: IC50=246nM
    82424 3f7u:C (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 20363633
    82425 3f7u:C (2.0) BS02 AG4 4.2.1.1 GO:0004089 ... P22748 20363633 MOAD: ic50=246nM
    BindingDB: IC50=246nM
    82426 3f7u:D (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 20363633
    82427 3f7u:D (2.0) BS02 AG4 4.2.1.1 GO:0004089 ... P22748 20363633 MOAD: ic50=246nM
    BindingDB: IC50=246nM
    82428 3f80:A (1.6) BS01 MN 3.5.3.1 GO:0000050 ... P05089 19032027
    82429 3f80:A (1.6) BS02 MN 3.5.3.1 GO:0000050 ... P05089 19032027
    82430 3f80:A (1.6) BS03 6HN 3.5.3.1 GO:0000050 ... P05089 19032027 MOAD: Kd=60uM
    PDBbind: -logKd/Ki=4.22, Kd=60uM
    82431 3f80:B (1.6) BS01 6HN 3.5.3.1 GO:0000050 ... P05089 19032027
    82432 3f80:B (1.6) BS02 MN 3.5.3.1 GO:0000050 ... P05089 19032027
    82433 3f80:B (1.6) BS03 MN 3.5.3.1 GO:0000050 ... P05089 19032027
    82434 3f81:A (1.9) BS01 STT 3.1.3.16
    3.1.3.48    		 GO:0001772 ... P51452 19888758 MOAD: ic50=0.074uM
    PDBbind: -logKd/Ki=7.13, IC50=74nM
    82435 3f81:B (1.9) BS01 STT 3.1.3.16
    3.1.3.48    		 GO:0001772 ... P51452 19888758 MOAD: ic50=0.074uM
    82436 3f8a:A (1.95) BS01 LSR ? GO:0001972 ... P29373 N/A
    82437 3f8d:A (1.4) BS01 FAD 1.6.99.3 GO:0000166 ... Q8X236 19110078
    82438 3f8d:B (1.4) BS01 FAD 1.6.99.3 GO:0000166 ... Q8X236 19110078
    82439 3f8d:C (1.4) BS01 FAD 1.6.99.3 GO:0000166 ... Q8X236 19110078
    82440 3f8d:D (1.4) BS01 FAD 1.6.99.3 GO:0000166 ... Q8X236 19110078
    82441 3f8e:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19206230
    82442 3f8e:A (2.0) BS02 TE1 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19206230 MOAD: Ki=59nM
    PDBbind: -logKd/Ki=7.23, Ki=59nM
    BindingDB: IC50=59nM
    82443 3f8n:A (3.15) BS01 MN ? GO:0000976 ... P71086 19508285
    82444 3f8n:A (3.15) BS02 ZN ? GO:0000976 ... P71086 19508285
    82445 3f8n:B (3.15) BS01 MN ? GO:0000976 ... P71086 19508285
    82446 3f8n:B (3.15) BS02 ZN ? GO:0000976 ... P71086 19508285
    82447 3f8p:A (1.8) BS01 NAD 1.6.99.3 GO:0000166 ... Q8X236 19110078
    82448 3f8p:B (1.8) BS01 NAD 1.6.99.3 GO:0000166 ... Q8X236 19110078
    82449 3f8p:C (1.8) BS01 NAD 1.6.99.3 GO:0000166 ... Q8X236 19110078
    82450 3f8p:D (1.8) BS01 NAD 1.6.99.3 GO:0000166 ... Q8X236 19110078
    82451 3f8r:A (1.95) BS01 NAP 1.6.99.3 GO:0000166 ... Q8X236 19110078
    82452 3f8r:A (1.95) BS02 NAP 1.6.99.3 GO:0000166 ... Q8X236 19110078
    82453 3f8r:B (1.95) BS01 NAP 1.6.99.3 GO:0000166 ... Q8X236 19110078
    82454 3f8r:B (1.95) BS02 NAP 1.6.99.3 GO:0000166 ... Q8X236 19110078
    82455 3f8r:C (1.95) BS01 NAP 1.6.99.3 GO:0000166 ... Q8X236 19110078
    82456 3f8r:C (1.95) BS02 NAP 1.6.99.3 GO:0000166 ... Q8X236 19110078
    82457 3f8r:D (1.95) BS01 NAP 1.6.99.3 GO:0000166 ... Q8X236 19110078
    82458 3f8r:D (1.95) BS02 NAP 1.6.99.3 GO:0000166 ... Q8X236 19110078
    82459 3f8s:A (2.43) BS01 PF2 3.4.14.5 GO:0001618 ... P27487 19275964 MOAD: ic50=12.9nM
    PDBbind: -logKd/Ki=7.89, IC50=13nM
    BindingDB: IC50=13nM
    82460 3f8s:B (2.43) BS01 PF2 3.4.14.5 GO:0001618 ... P27487 19275964 MOAD: ic50=12.9nM
    BindingDB: IC50=13nM
    82461 3f8w:A (2.3) BS01 ADN 2.4.2.1 GO:0003824 ... Q9BMI9 20057051 PDBbind: -logKd/Ki=4.08, IC50=82.3uM
    82462 3f8w:B (2.3) BS01 ADN 2.4.2.1 GO:0003824 ... Q9BMI9 20057051 PDBbind: -logKd/Ki=4.08, IC50=82.3uM
    82463 3f8w:C (2.3) BS01 ADN 2.4.2.1 GO:0003824 ... Q9BMI9 20057051
    82464 3f8y:A (1.45) BS01 DH1 1.5.1.3 GO:0000900 ... P00374 19196009 MOAD: Ki=8.3nM
    BindingDB: IC50=8000nM
    82465 3f8y:A (1.45) BS02 NDP 1.5.1.3 GO:0000900 ... P00374 19196009
    82466 3f8z:A (2.01) BS01 DH1 1.5.1.3 GO:0000900 ... P00374 19196009 MOAD: Ki=66nM
    BindingDB: IC50=8000nM
    82467 3f8z:A (2.01) BS02 NDP 1.5.1.3 GO:0000900 ... P00374 19196009
    82468 3f91:A (1.9) BS01 DH1 1.5.1.3 GO:0000900 ... P00374 19196009 BindingDB: IC50=8000nM
    82469 3f91:A (1.9) BS02 NDP 1.5.1.3 GO:0000900 ... P00374 19196009
    82470 3f97:A (1.7) BS01 GD7 3.1.1.47 GO:0003847 ... Q13093 19394314
    82471 3f97:B (1.7) BS01 GD7 3.1.1.47 GO:0003847 ... Q13093 19394314
    82472 3f98:A (1.7) BS01 NTJ 3.1.1.47 GO:0003847 ... Q13093 19394314
    82473 3f98:B (1.7) BS01 NTJ 3.1.1.47 GO:0003847 ... Q13093 19394314
    82474 3f98:C (1.7) BS01 NTJ 3.1.1.47 GO:0003847 ... Q13093 19394314
    82475 3f9c:A (2.3) BS01 DFP 3.1.1.47 GO:0003847 ... Q13093 19394314
    82476 3f9c:B (2.3) BS01 DFP 3.1.1.47 GO:0003847 ... Q13093 19394314
    82477 3f9d:A (2.0) BS01 LSR ? GO:0001972 ... P29373 N/A
    82478 3f9d:B (2.0) BS01 LSR ? GO:0001972 ... P29373 N/A
    82479 3f9m:A (1.5) BS01 GLC 2.7.1.1 GO:0001678 ... P35557 22101819
    82480 3f9m:A (1.5) BS02 MRK 2.7.1.1 GO:0001678 ... P35557 22101819 BindingDB: EC50=67.11nM, Kd=360nM
    82481 3f9o:A (2.03) BS01 CO3 3.5.2.6 GO:0008270 ... P26918 19651913
    82482 3f9o:A (2.03) BS02 CO3 3.5.2.6 GO:0008270 ... P26918 19651913
    82483 3f9o:A (2.03) BS03 ZN 3.5.2.6 GO:0008270 ... P26918 19651913
    82484 3f9o:A (2.03) BS04 ZN 3.5.2.6 GO:0008270 ... P26918 19651913
    82485 3f9r:A (1.85) BS01 MG 5.4.2.8 GO:0004615 ... Q38AW2 N/A
    82486 3f9r:B (1.85) BS01 MG 5.4.2.8 GO:0004615 ... Q38AW2 N/A
    82487 3fa6:A (1.54) BS01 LSR ? GO:0001972 ... P29373 N/A
    82488 3fa6:B (1.54) BS01 LSR ? GO:0001972 ... P29373 N/A
    82489 3faa:A (3.35) BS01 55F 2.7.11.30 GO:0004672 ... P36897 19135364 PDBbind: -logKd/Ki=8.15, Ki=7.1nM
    BindingDB: Ki=7.1nM, EC50=14800nM
    82490 3faa:B (3.35) BS01 55F 2.7.11.30 GO:0004672 ... P36897 19135364 BindingDB: Ki=7.1nM, EC50=14800nM
    82491 3faa:C (3.35) BS01 55F 2.7.11.30 GO:0004672 ... P36897 19135364 BindingDB: Ki=7.1nM, EC50=14800nM
    82492 3faa:D (3.35) BS01 55F 2.7.11.30 GO:0004672 ... P36897 19135364 BindingDB: Ki=7.1nM, EC50=14800nM
    82493 3faa:E (3.35) BS01 55F 2.7.11.30 GO:0004672 ... P36897 19135364 BindingDB: Ki=7.1nM, EC50=14800nM
    82494 3fai:A (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... P26918 19651913
    82495 3fai:A (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... P26918 19651913
    82496 3fal:A (2.36) BS01 REA ? GO:0003677 ... P19793 18800767
    82497 3fal:C (2.36) BS01 REA ? GO:0003677 ... P19793 18800767
    82498 3fap:A (1.85) BS01 ARD 5.2.1.8 GO:0000413 ... P62942 10089303
    82499 3fas:A (1.4) BS01 GLU ? GO:0015276 ... P19493 19022251 MOAD: Ki=171nM
    PDBbind: -logKd/Ki=6.77, Ki=171nM
    82500 3fas:B (1.4) BS01 GLU ? GO:0015276 ... P19493 19022251 MOAD: Ki=171nM
    82501 3fat:A (1.9) BS01 AMQ ? GO:0015276 ... P19493 19022251 MOAD: Kd=22.8nM
    PDBbind: -logKd/Ki=7.64, Kd=22.8nM
    BindingDB: Ki=40nM
    82502 3fat:B (1.9) BS01 AMQ ? GO:0015276 ... P19493 19022251 MOAD: Kd=22.8nM
    BindingDB: Ki=40nM
    82503 3fat:C (1.9) BS01 AMQ ? GO:0015276 ... P19493 19022251 MOAD: Kd=22.8nM
    BindingDB: Ki=40nM
    82504 3fav:B (2.15) BS01 ZN ? GO:0005515 ... P9WNK7 24586681
    82505 3fav:C (2.15) BS01 ZN ? GO:0005515 ... P9WNK5 24586681
    82506 3faz:A (1.9) BS01 NOS 2.4.2.1 GO:0003824 ... Q9BMI9 20057051
    82507 3faz:B (1.9) BS01 NOS 2.4.2.1 GO:0003824 ... Q9BMI9 20057051
    82508 3faz:C (1.9) BS01 NOS 2.4.2.1 GO:0003824 ... Q9BMI9 20057051
    82509 3fb1:A (2.002) BS01 R1P 2.4.2.1 GO:0003824 ... Q9BMI9 21169694
    82510 3fb1:B (2.002) BS01 R1P 2.4.2.1 GO:0003824 ... Q9BMI9 21169694
    82511 3fb1:C (2.002) BS01 R1P 2.4.2.1 GO:0003824 ... Q9BMI9 21169694
    82512 3fb4:A (2.0) BS01 ZN 2.7.4.3 GO:0004017 ... Q6B341 19652331
    82513 3fb4:A (2.0) BS02 AP5 2.7.4.3 GO:0004017 ... Q6B341 19652331
    82514 3fbp:A (2.8) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 2157849
    82515 3fbp:B (2.8) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 2157849
    82516 3fbr:A (3.5) BS01 ACP 2.7.11.1 GO:0000287 ... P23874 19150849
    82517 3fby:A (3.15) BS01 CA ? GO:0005509 ... P49747 19276170
    82518 3fby:A (3.15) BS02 CA ? GO:0005509 ... P49747 19276170
    82519 3fby:A (3.15) BS03 CA ? GO:0005509 ... P49747 19276170
    82520 3fby:A (3.15) BS04 CA ? GO:0005509 ... P49747 19276170
    82521 3fby:A (3.15) BS05 CA ? GO:0005509 ... P49747 19276170
    82522 3fby:A (3.15) BS06 CA ? GO:0005509 ... P49747 19276170
    82523 3fby:A (3.15) BS07 CA ? GO:0005509 ... P49747 19276170
    82524 3fby:A (3.15) BS08 CA ? GO:0005509 ... P49747 19276170
    82525 3fby:A (3.15) BS09 CA ? GO:0005509 ... P49747 19276170
    82526 3fby:A (3.15) BS10 CA ? GO:0005509 ... P49747 19276170
    82527 3fby:A (3.15) BS11 CA ? GO:0005509 ... P49747 19276170
    82528 3fby:A (3.15) BS12 CA ? GO:0005509 ... P49747 19276170
    82529 3fby:A (3.15) BS13 CA ? GO:0005509 ... P49747 19276170
    82530 3fby:A (3.15) BS14 CA ? GO:0005509 ... P49747 19276170
    82531 3fby:A (3.15) BS15 CA ? GO:0005509 ... P49747 19276170
    82532 3fby:A (3.15) BS16 CA ? GO:0005509 ... P49747 19276170
    82533 3fby:A (3.15) BS17 CA ? GO:0005509 ... P49747 19276170
    82534 3fby:A (3.15) BS18 CA ? GO:0005509 ... P49747 19276170
    82535 3fby:A (3.15) BS19 CA ? GO:0005509 ... P49747 19276170
    82536 3fby:A (3.15) BS20 CA ? GO:0005509 ... P49747 19276170
    82537 3fby:A (3.15) BS21 CA ? GO:0005509 ... P49747 19276170
    82538 3fby:A (3.15) BS22 CA ? GO:0005509 ... P49747 19276170
    82539 3fby:A (3.15) BS23 CA ? GO:0005509 ... P49747 19276170
    82540 3fby:A (3.15) BS24 CA ? GO:0005509 ... P49747 19276170
    82541 3fby:A (3.15) BS25 CA ? GO:0005509 ... P49747 19276170
    82542 3fby:A (3.15) BS26 CA ? GO:0005509 ... P49747 19276170
    82543 3fby:A (3.15) BS27 CA ? GO:0005509 ... P49747 19276170
    82544 3fby:A (3.15) BS28 CA ? GO:0005509 ... P49747 19276170
    82545 3fby:A (3.15) BS29 CA ? GO:0005509 ... P49747 19276170
    82546 3fby:A (3.15) BS30 CA ? GO:0005509 ... P49747 19276170
    82547 3fby:B (3.15) BS01 CA ? GO:0005509 ... P49747 19276170
    82548 3fby:B (3.15) BS02 CA ? GO:0005509 ... P49747 19276170
    82549 3fby:B (3.15) BS03 CA ? GO:0005509 ... P49747 19276170
    82550 3fby:B (3.15) BS04 CA ? GO:0005509 ... P49747 19276170
    82551 3fby:B (3.15) BS05 CA ? GO:0005509 ... P49747 19276170
    82552 3fby:B (3.15) BS06 CA ? GO:0005509 ... P49747 19276170
    82553 3fby:B (3.15) BS07 CA ? GO:0005509 ... P49747 19276170
    82554 3fby:B (3.15) BS08 CA ? GO:0005509 ... P49747 19276170
    82555 3fby:B (3.15) BS09 CA ? GO:0005509 ... P49747 19276170
    82556 3fby:B (3.15) BS10 CA ? GO:0005509 ... P49747 19276170
    82557 3fby:B (3.15) BS11 CA ? GO:0005509 ... P49747 19276170
    82558 3fby:B (3.15) BS12 CA ? GO:0005509 ... P49747 19276170
    82559 3fby:B (3.15) BS13 CA ? GO:0005509 ... P49747 19276170
    82560 3fby:B (3.15) BS14 CA ? GO:0005509 ... P49747 19276170
    82561 3fby:B (3.15) BS15 CA ? GO:0005509 ... P49747 19276170
    82562 3fby:B (3.15) BS16 CA ? GO:0005509 ... P49747 19276170
    82563 3fby:B (3.15) BS17 CA ? GO:0005509 ... P49747 19276170
    82564 3fby:B (3.15) BS18 CA ? GO:0005509 ... P49747 19276170
    82565 3fby:B (3.15) BS19 CA ? GO:0005509 ... P49747 19276170
    82566 3fby:B (3.15) BS20 CA ? GO:0005509 ... P49747 19276170
    82567 3fby:B (3.15) BS21 CA ? GO:0005509 ... P49747 19276170
    82568 3fby:B (3.15) BS22 CA ? GO:0005509 ... P49747 19276170
    82569 3fby:B (3.15) BS23 CA ? GO:0005509 ... P49747 19276170
    82570 3fby:B (3.15) BS24 CA ? GO:0005509 ... P49747 19276170
    82571 3fby:B (3.15) BS25 CA ? GO:0005509 ... P49747 19276170
    82572 3fby:B (3.15) BS26 CA ? GO:0005509 ... P49747 19276170
    82573 3fby:B (3.15) BS27 CA ? GO:0005509 ... P49747 19276170
    82574 3fby:B (3.15) BS28 CA ? GO:0005509 ... P49747 19276170
    82575 3fby:B (3.15) BS29 CA ? GO:0005509 ... P49747 19276170
    82576 3fby:C (3.15) BS01 CA ? GO:0005509 ... P49747 19276170
    82577 3fby:C (3.15) BS02 CA ? GO:0005509 ... P49747 19276170
    82578 3fby:C (3.15) BS03 CA ? GO:0005509 ... P49747 19276170
    82579 3fby:C (3.15) BS04 CA ? GO:0005509 ... P49747 19276170
    82580 3fby:C (3.15) BS05 CA ? GO:0005509 ... P49747 19276170
    82581 3fby:C (3.15) BS06 CA ? GO:0005509 ... P49747 19276170
    82582 3fby:C (3.15) BS07 CA ? GO:0005509 ... P49747 19276170
    82583 3fby:C (3.15) BS08 CA ? GO:0005509 ... P49747 19276170
    82584 3fby:C (3.15) BS09 CA ? GO:0005509 ... P49747 19276170
    82585 3fby:C (3.15) BS10 CA ? GO:0005509 ... P49747 19276170
    82586 3fby:C (3.15) BS11 CA ? GO:0005509 ... P49747 19276170
    82587 3fby:C (3.15) BS12 CA ? GO:0005509 ... P49747 19276170
    82588 3fby:C (3.15) BS13 CA ? GO:0005509 ... P49747 19276170
    82589 3fby:C (3.15) BS14 CA ? GO:0005509 ... P49747 19276170
    82590 3fby:C (3.15) BS15 CA ? GO:0005509 ... P49747 19276170
    82591 3fby:C (3.15) BS16 CA ? GO:0005509 ... P49747 19276170
    82592 3fby:C (3.15) BS17 CA ? GO:0005509 ... P49747 19276170
    82593 3fby:C (3.15) BS18 CA ? GO:0005509 ... P49747 19276170
    82594 3fby:C (3.15) BS19 CA ? GO:0005509 ... P49747 19276170
    82595 3fby:C (3.15) BS20 CA ? GO:0005509 ... P49747 19276170
    82596 3fby:C (3.15) BS21 CA ? GO:0005509 ... P49747 19276170
    82597 3fby:C (3.15) BS22 CA ? GO:0005509 ... P49747 19276170
    82598 3fby:C (3.15) BS23 CA ? GO:0005509 ... P49747 19276170
    82599 3fby:C (3.15) BS24 CA ? GO:0005509 ... P49747 19276170
    82600 3fby:C (3.15) BS25 CA ? GO:0005509 ... P49747 19276170
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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