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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    74201 3aed:B (3.52) BS04 BOL 1.3.5.1 GO:0005515 ... Q007T0 N/A
    74202 3aed:C (3.52) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    74203 3aed:C (3.52) BS02 BOL ? GO:0006099 ... D0VWV4 N/A
    74204 3aed:D (3.52) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    74205 3aed:D (3.52) BS02 BOL ? GO:0005740 ... A5GZW8 N/A
    74206 3aed:D (3.52) BS03 EPH ? GO:0005740 ... A5GZW8 N/A
    74207 3aee:A (3.22) BS01 FAD 1.3.5.1 GO:0005515 ... Q0QF01 N/A
    74208 3aee:B (3.22) BS01 FES 1.3.5.1 GO:0005515 ... Q007T0 N/A
    74209 3aee:B (3.22) BS02 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    74210 3aee:B (3.22) BS03 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    74211 3aee:B (3.22) BS04 AT5 1.3.5.1 GO:0005515 ... Q007T0 N/A
    74212 3aee:C (3.22) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    74213 3aee:C (3.22) BS02 AT5 ? GO:0006099 ... D0VWV4 N/A
    74214 3aee:D (3.22) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    74215 3aef:A (2.8) BS01 FAD 1.3.5.1 GO:0005515 ... Q0QF01 N/A
    74216 3aef:B (2.8) BS01 FES 1.3.5.1 GO:0005515 ... Q007T0 N/A
    74217 3aef:B (2.8) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    74218 3aef:B (2.8) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    74219 3aef:C (2.8) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    74220 3aef:D (2.8) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    74221 3aef:D (2.8) BS02 EPH ? GO:0005740 ... A5GZW8 N/A
    74222 3aeg:A (3.27) BS01 FAD 1.3.5.1 GO:0005515 ... Q0QF01 N/A
    74223 3aeg:B (3.27) BS01 FES 1.3.5.1 GO:0005515 ... Q007T0 N/A
    74224 3aeg:B (3.27) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    74225 3aeg:B (3.27) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    74226 3aeg:B (3.27) BS04 11J 1.3.5.1 GO:0005515 ... Q007T0 N/A
    74227 3aeg:C (3.27) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    74228 3aeg:C (3.27) BS02 11J ? GO:0006099 ... D0VWV4 N/A
    74229 3aeg:D (3.27) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    74230 3aej:A (2.59) BS01 AA5 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74231 3aej:A (2.59) BS02 AA5 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74232 3aej:B (2.59) BS01 AA5 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74233 3aej:C (2.59) BS01 AA5 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74234 3aej:C (2.59) BS02 MET 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74235 3aej:D (2.59) BS01 AA5 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74236 3aej:D (2.59) BS02 AA5 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74237 3ael:A (2.0) BS01 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74238 3ael:A (2.0) BS02 2LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74239 3ael:B (2.0) BS01 2LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74240 3ael:B (2.0) BS02 2LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74241 3ael:C (2.0) BS01 2LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74242 3ael:C (2.0) BS02 2LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74243 3ael:D (2.0) BS01 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74244 3ael:D (2.0) BS02 2LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74245 3aem:A (2.2) BS01 2LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74246 3aem:A (2.2) BS02 2LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74247 3aem:B (2.2) BS01 2LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74248 3aem:C (2.2) BS01 2LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74249 3aem:C (2.2) BS02 MET 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74250 3aem:D (2.2) BS01 2LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74251 3aem:D (2.2) BS02 2LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74252 3aen:A (2.0) BS01 MET 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74253 3aen:A (2.0) BS02 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74254 3aen:B (2.0) BS01 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74255 3aen:C (2.0) BS01 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74256 3aen:D (2.0) BS01 MET 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74257 3aen:D (2.0) BS02 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74258 3aeo:A (2.15) BS01 3LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74259 3aeo:A (2.15) BS02 3LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74260 3aeo:B (2.15) BS01 3LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74261 3aeo:B (2.15) BS02 3LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74262 3aeo:C (2.15) BS01 3LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74263 3aeo:C (2.15) BS02 3LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74264 3aeo:D (2.15) BS01 3LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74265 3aeo:D (2.15) BS02 3LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74266 3aep:A (2.28) BS01 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74267 3aep:A (2.28) BS02 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74268 3aep:B (2.28) BS01 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74269 3aep:B (2.28) BS02 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74270 3aep:C (2.28) BS01 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74271 3aep:C (2.28) BS02 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74272 3aep:D (2.28) BS01 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74273 3aep:D (2.28) BS02 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    74274 3aex:A (2.1) BS01 AN7 4.2.3.1 GO:0004795 ... Q5SL02 21084312
    74275 3aex:A (2.1) BS02 PO4 4.2.3.1 GO:0004795 ... Q5SL02 21084312
    74276 3aex:B (2.1) BS01 AN7 4.2.3.1 GO:0004795 ... Q5SL02 21084312
    74277 3aex:B (2.1) BS02 PO4 4.2.3.1 GO:0004795 ... Q5SL02 21084312
    74278 3aey:A (1.92) BS01 SO4 4.2.3.1 GO:0004795 ... Q5SL02 21084312
    74279 3aey:A (1.92) BS02 SO4 4.2.3.1 GO:0004795 ... Q5SL02 21084312
    74280 3aey:A (1.92) BS03 SO4 4.2.3.1 GO:0004795 ... Q5SL02 21084312
    74281 3aey:B (1.92) BS01 SO4 4.2.3.1 GO:0004795 ... Q5SL02 21084312
    74282 3aey:B (1.92) BS02 SO4 4.2.3.1 GO:0004795 ... Q5SL02 21084312
    74283 3aey:B (1.92) BS03 SO4 4.2.3.1 GO:0004795 ... Q5SL02 21084312
    74284 3aez:A (2.2) BS01 GDP 2.7.1.33 GO:0004594 ... P9WPA7 20451532
    74285 3aez:A (2.2) BS02 PAZ 2.7.1.33 GO:0004594 ... P9WPA7 20451532
    74286 3af0:A (2.5) BS01 GDP 2.7.1.33 GO:0004594 ... P9WPA7 20451532
    74287 3af0:A (2.5) BS02 PAU 2.7.1.33 GO:0004594 ... P9WPA7 20451532
    74288 3af1:A (2.5) BS01 GDP 2.7.1.33 GO:0004594 ... P9WPA7 20451532
    74289 3af2:A (2.3) BS01 ACP 2.7.1.33 GO:0004594 ... P9WPA7 20451532
    74290 3af3:A (2.35) BS01 PAU 2.7.1.33 GO:0004594 ... P9WPA7 20451532
    74291 3af7:X (1.58) BS01 PD ? GO:0005506 ... P02791 20586408
    74292 3af7:X (1.58) BS02 PLL ? GO:0005506 ... P02791 20586408
    74293 3af7:X (1.58) BS03 PLL ? GO:0005506 ... P02791 20586408
    74294 3af7:X (1.58) BS04 PLL ? GO:0005506 ... P02791 20586408
    74295 3af8:X (1.66) BS01 PLL ? GO:0005506 ... P02791 20586408
    74296 3af8:X (1.66) BS02 PLL ? GO:0005506 ... P02791 20586408
    74297 3af9:X (1.85) BS01 PLL ? GO:0005506 ... P02791 20586408
    74298 3afa:A (2.5) BS01 dna ? GO:0000786 ... P68431 20498094
    74299 3afa:A (2.5) BS02 dna ? GO:0000786 ... P68431 20498094
    74300 3afa:B (2.5) BS01 dna ? GO:0000781 ... P62805 20498094
    74301 3afa:B (2.5) BS02 dna ? GO:0000781 ... P62805 20498094
    74302 3afa:C (2.5) BS01 dna ? GO:0000786 ... P04908 20498094
    74303 3afa:C (2.5) BS02 dna ? GO:0000786 ... P04908 20498094
    74304 3afa:D (2.5) BS01 dna ? GO:0000786 ... P06899 20498094
    74305 3afa:D (2.5) BS02 dna ? GO:0000786 ... P06899 20498094
    74306 3afa:E (2.5) BS01 dna ? GO:0000786 ... P68431 20498094
    74307 3afa:E (2.5) BS02 dna ? GO:0000786 ... P68431 20498094
    74308 3afa:F (2.5) BS01 dna ? GO:0000781 ... P62805 20498094
    74309 3afa:F (2.5) BS02 dna ? GO:0000781 ... P62805 20498094
    74310 3afa:G (2.5) BS01 dna ? GO:0000786 ... P04908 20498094
    74311 3afa:G (2.5) BS02 dna ? GO:0000786 ... P04908 20498094
    74312 3afa:H (2.5) BS01 dna ? GO:0000786 ... P06899 20498094
    74313 3afa:H (2.5) BS02 dna ? GO:0000786 ... P06899 20498094
    74314 3afh:A (2.0) BS01 GSU 6.1.1.17 GO:0000049 ... Q9X2I8 20606262
    74315 3afk:A (1.95) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 20530247 PDBbind: -logKd/Ki=3.60, Kd=251.89uM
    74316 3afk:B (1.95) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 20530247
    74317 3afl:A (2.99) BS01 LGU 4.2.2.- GO:0016020 ... A9CEJ9 20507980
    74318 3afl:A (2.99) BS02 LGU 4.2.2.- GO:0016020 ... A9CEJ9 20507980
    74319 3afl:A (2.99) BS03 MAW 4.2.2.- GO:0016020 ... A9CEJ9 20507980
    74320 3afo:A (2.0) BS01 NAI 2.7.1.86 GO:0003951 ... Q06892 N/A
    74321 3afo:B (2.0) BS01 NAI 2.7.1.86 GO:0003951 ... Q06892 N/A
    74322 3afv:A (1.4) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    74323 3ag0:A (2.6) BS01 HEM 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 21254233
    74324 3ag1:A (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    74325 3ag1:A (2.2) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    74326 3ag1:A (2.2) BS03 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    74327 3ag1:A (2.2) BS04 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    74328 3ag1:B (2.2) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    74329 3ag1:C (2.2) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    74330 3ag1:F (2.2) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 20385840
    74331 3ag1:G (2.2) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 20385840
    74332 3ag1:M (2.2) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 20385840
    74333 3ag1:N (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    74334 3ag1:N (2.2) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    74335 3ag1:N (2.2) BS03 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    74336 3ag1:N (2.2) BS04 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    74337 3ag1:O (2.2) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    74338 3ag1:S (2.2) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 20385840
    74339 3ag1:T (2.2) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 20385840
    74340 3ag1:Z (2.2) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 20385840
    74341 3ag2:A (1.802) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    74342 3ag2:A (1.802) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    74343 3ag2:A (1.802) BS03 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    74344 3ag2:A (1.802) BS04 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    74345 3ag2:A (1.802) BS05 DMU 7.1.1.9 GO:0004129 ... P00396 20385840
    74346 3ag2:B (1.802) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 20385840
    74347 3ag2:B (1.802) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    74348 3ag2:C (1.802) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    74349 3ag2:C (1.802) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    74350 3ag2:C (1.802) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    74351 3ag2:F (1.802) BS01 ZN ? GO:0005740 ... P00428 20385840
    74352 3ag2:G (1.802) BS01 DMU ? GO:0005743 ... P07471 20385840
    74353 3ag2:J (1.802) BS01 DMU ? GO:0006123 ... P07470 20385840
    74354 3ag2:J (1.802) BS02 DMU ? GO:0006123 ... P07470 20385840
    74355 3ag2:L (1.802) BS01 DMU ? GO:0006123 ... P00430 20385840
    74356 3ag2:L (1.802) BS02 DMU ? GO:0006123 ... P00430 20385840
    74357 3ag2:M (1.802) BS01 DMU ? GO:0006123 ... P10175 20385840
    74358 3ag2:N (1.802) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    74359 3ag2:N (1.802) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    74360 3ag2:N (1.802) BS03 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    74361 3ag2:N (1.802) BS04 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    74362 3ag2:O (1.802) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 20385840
    74363 3ag2:O (1.802) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    74364 3ag2:P (1.802) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    74365 3ag2:P (1.802) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    74366 3ag2:P (1.802) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    74367 3ag2:S (1.802) BS01 ZN ? GO:0005740 ... P00428 20385840
    74368 3ag2:T (1.802) BS01 DMU ? GO:0005743 ... P07471 20385840
    74369 3ag2:W (1.802) BS01 DMU ? GO:0006123 ... P07470 20385840
    74370 3ag2:W (1.802) BS02 DMU ? GO:0006123 ... P07470 20385840
    74371 3ag2:Y (1.802) BS01 DMU ? GO:0006123 ... P00430 20385840
    74372 3ag2:Z (1.802) BS01 DMU ? GO:0006123 ... P10175 20385840
    74373 3ag3:A (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    74374 3ag3:A (1.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    74375 3ag3:A (1.8) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20385840
    74376 3ag3:A (1.8) BS04 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    74377 3ag3:A (1.8) BS05 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    74378 3ag3:B (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 20385840
    74379 3ag3:B (1.8) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    74380 3ag3:C (1.8) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    74381 3ag3:F (1.8) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 20385840
    74382 3ag3:M (1.8) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 20385840
    74383 3ag3:N (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    74384 3ag3:N (1.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    74385 3ag3:N (1.8) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20385840
    74386 3ag3:N (1.8) BS04 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    74387 3ag3:N (1.8) BS05 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    74388 3ag3:O (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 20385840
    74389 3ag3:O (1.8) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    74390 3ag3:S (1.8) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 20385840
    74391 3ag3:T (1.8) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 20385840
    74392 3ag3:Z (1.8) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 20385840
    74393 3ag4:A (2.05) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    74394 3ag4:A (2.05) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    74395 3ag4:A (2.05) BS03 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    74396 3ag4:A (2.05) BS04 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    74397 3ag4:B (2.05) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    74398 3ag4:C (2.05) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    74399 3ag4:F (2.05) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 20385840
    74400 3ag4:M (2.05) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 20385840
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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