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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    73801 3a91:A (1.55) BS01 RH3 3.2.1.17 GO:0003796 ... P00698 20146274
    73802 3a92:A (1.5) BS01 RH3 3.2.1.17 GO:0003796 ... P00698 20146274
    73803 3a92:A (1.5) BS02 RH3 3.2.1.17 GO:0003796 ... P00698 20146274
    73804 3a93:A (1.55) BS01 RH3 3.2.1.17 GO:0003796 ... P00698 20146274
    73805 3a93:A (1.55) BS02 RH3 3.2.1.17 GO:0003796 ... P00698 20146274
    73806 3a93:A (1.55) BS03 RH3 3.2.1.17 GO:0003796 ... P00698 20146274
    73807 3a94:A (1.55) BS01 RH3 3.2.1.17 GO:0003796 ... P00698 20146274
    73808 3a94:A (1.55) BS02 RH3 3.2.1.17 GO:0003796 ... P00698 20146274
    73809 3a94:A (1.55) BS03 RH3 3.2.1.17 GO:0003796 ... P00698 20146274
    73810 3a94:A (1.55) BS04 RH3 3.2.1.17 GO:0003796 ... P00698 20146274
    73811 3a95:A (1.5) BS01 RH3 3.2.1.17 GO:0003796 ... P00698 20146274
    73812 3a99:A (1.6) BS01 ANP 2.7.11.1 GO:0004672 ... P11309 21062737
    73813 3a9e:A (2.75) BS01 754 ? GO:0003677 ... P28700 21152046
    73814 3a9e:B (2.75) BS01 peptide ? GO:0003677 ... P10276 21152046
    73815 3a9e:B (2.75) BS02 REA ? GO:0003677 ... P10276 21152046
    73816 3a9i:A (1.8) BS01 CO 2.3.3.14 GO:0003824 ... O87198 19996101
    73817 3a9i:A (1.8) BS02 LYS 2.3.3.14 GO:0003824 ... O87198 19996101 PDBbind: -logKd/Ki=4.15, Ki=70.7uM
    73818 3a9r:A (1.77) BS01 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73819 3a9r:B (1.77) BS01 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73820 3a9r:C (1.77) BS01 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73821 3a9s:A (1.6) BS01 GOL 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73822 3a9s:A (1.6) BS02 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73823 3a9s:A (1.6) BS03 GOL 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73824 3a9s:A (1.6) BS04 GOL 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73825 3a9s:B (1.6) BS01 GOL 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73826 3a9s:B (1.6) BS02 GOL 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73827 3a9s:B (1.6) BS03 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73828 3a9s:B (1.6) BS04 GOL 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73829 3a9s:C (1.6) BS01 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73830 3a9s:C (1.6) BS02 GOL 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73831 3a9s:C (1.6) BS03 GOL 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73832 3a9t:A (2.61) BS01 FOC 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73833 3a9t:A (2.61) BS02 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73834 3a9t:A (2.61) BS03 FOC 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73835 3a9t:B (2.61) BS01 FOC 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73836 3a9t:B (2.61) BS02 FOC 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73837 3a9t:B (2.61) BS03 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73838 3a9t:C (2.61) BS01 FOC 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73839 3a9t:C (2.61) BS02 FOC 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73840 3a9t:C (2.61) BS03 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    73841 3a9x:A (2.0) BS01 PLP 4.4.1.16 GO:0001887 ... Q68FT9 20164179
    73842 3a9x:B (2.0) BS01 PLP 4.4.1.16 GO:0001887 ... Q68FT9 20164179
    73843 3a9x:B (2.0) BS02 PO4 4.4.1.16 GO:0001887 ... Q68FT9 20164179
    73844 3a9x:B (2.0) BS03 PO4 4.4.1.16 GO:0001887 ... Q68FT9 20164179
    73845 3a9y:A (1.85) BS01 CYS 4.4.1.16 GO:0001887 ... Q68FT9 20164179 MOAD: Ki=9.6mM
    73846 3a9y:A (1.85) BS02 PLP 4.4.1.16 GO:0001887 ... Q68FT9 20164179
    73847 3a9y:A (1.85) BS03 PLP 4.4.1.16 GO:0001887 ... Q68FT9 20164179
    73848 3a9y:B (1.85) BS01 CYS 4.4.1.16 GO:0001887 ... Q68FT9 20164179
    73849 3a9y:B (1.85) BS02 PLP 4.4.1.16 GO:0001887 ... Q68FT9 20164179
    73850 3a9z:A (1.55) BS01 PLP 4.4.1.16 GO:0001887 ... Q68FT9 20164179
    73851 3a9z:A (1.55) BS02 SLP 4.4.1.16 GO:0001887 ... Q68FT9 20164179
    73852 3a9z:A (1.55) BS03 PO4 4.4.1.16 GO:0001887 ... Q68FT9 20164179
    73853 3a9z:A (1.55) BS04 PLP 4.4.1.16 GO:0001887 ... Q68FT9 20164179
    73854 3a9z:B (1.55) BS01 PLP 4.4.1.16 GO:0001887 ... Q68FT9 20164179
    73855 3a9z:B (1.55) BS02 SLP 4.4.1.16 GO:0001887 ... Q68FT9 20164179
    73856 3aa0:B (1.7) BS01 peptide ? GO:0003779 ... P14315 20625546
    73857 3aa1:B (1.9) BS01 peptide ? GO:0003779 ... P14315 20625546
    73858 3aa6:B (1.9) BS01 peptide ? GO:0003779 ... P14315 20625546
    73859 3aae:A (3.3) BS01 peptide ? GO:0003779 ... P13127 N/A
    73860 3aae:B (3.3) BS01 peptide ? GO:0000902 ... P14315 N/A
    73861 3aae:C (3.3) BS01 peptide ? GO:0003779 ... P13127 N/A
    73862 3aae:D (3.3) BS01 peptide ? GO:0000902 ... P14315 N/A
    73863 3aae:E (3.3) BS01 peptide ? GO:0003779 ... P13127 N/A
    73864 3aae:F (3.3) BS01 peptide ? GO:0000902 ... P14315 N/A
    73865 3aae:G (3.3) BS01 peptide ? GO:0003779 ... P13127 N/A
    73866 3aae:H (3.3) BS01 peptide ? GO:0000902 ... P14315 N/A
    73867 3aae:I (3.3) BS01 peptide ? GO:0003779 ... P13127 N/A
    73868 3aae:J (3.3) BS01 peptide ? GO:0000902 ... P14315 N/A
    73869 3aak:A (2.7) BS01 ZN ? GO:0000287 ... O75340 20691033
    73870 3aak:A (2.7) BS02 ZN ? GO:0000287 ... O75340 20691033
    73871 3aak:A (2.7) BS03 ZN ? GO:0000287 ... O75340 20691033
    73872 3aas:A (1.75) BS01 GUS 3.4.21.4 GO:0004175 ... P00760 20202854 MOAD: Ki=31uM
    PDBbind: -logKd/Ki=4.51, Ki=31uM
    73873 3aas:A (1.75) BS02 CA 3.4.21.4 GO:0004175 ... P00760 20202854
    73874 3aat:A (2.8) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 1993208
    73875 3aau:A (1.8) BS01 GZC 3.4.21.4 GO:0004175 ... P00760 20202854 PDBbind: -logKd/Ki=5.05, Ki=9.0uM
    73876 3aau:A (1.8) BS02 CA 3.4.21.4 GO:0004175 ... P00760 20202854
    73877 3aav:A (1.7) BS01 A2C 3.4.21.4 GO:0004175 ... P00760 20202854 PDBbind: -logKd/Ki=6.62, Ki=0.24uM
    73878 3aav:A (1.7) BS02 CA 3.4.21.4 GO:0004175 ... P00760 20202854
    73879 3aav:B (1.7) BS01 A2C 3.4.21.4 GO:0004175 ... P00760 20202854
    73880 3aav:B (1.7) BS02 CA 3.4.21.4 GO:0004175 ... P00760 20202854
    73881 3aaw:A (2.5) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73882 3aaw:A (2.5) BS02 LYS 2.7.2.4 GO:0004072 ... P26512 20573952
    73883 3aaw:A (2.5) BS03 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73884 3aaw:B (2.5) BS01 THR 2.7.2.4 GO:0004072 ... Q93C54 20573952
    73885 3aaw:B (2.5) BS02 LYS 2.7.2.4 GO:0004072 ... Q93C54 20573952
    73886 3aaw:B (2.5) BS03 THR 2.7.2.4 GO:0004072 ... Q93C54 20573952
    73887 3aaw:C (2.5) BS01 LYS 2.7.2.4 GO:0004072 ... P26512 20573952
    73888 3aaw:C (2.5) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73889 3aaw:C (2.5) BS03 LYS 2.7.2.4 GO:0004072 ... P26512 20573952
    73890 3aaw:C (2.5) BS04 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73891 3aaw:D (2.5) BS01 LYS 2.7.2.4 GO:0004072 ... Q93C54 20573952
    73892 3aaw:D (2.5) BS02 THR 2.7.2.4 GO:0004072 ... Q93C54 20573952
    73893 3aaw:D (2.5) BS03 THR 2.7.2.4 GO:0004072 ... Q93C54 20573952
    73894 3ab2:A (2.59) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73895 3ab2:A (2.59) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73896 3ab2:C (2.59) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73897 3ab2:C (2.59) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73898 3ab2:E (2.59) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73899 3ab2:E (2.59) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73900 3ab2:G (2.59) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73901 3ab2:G (2.59) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73902 3ab2:I (2.59) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73903 3ab2:K (2.59) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73904 3ab2:K (2.59) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73905 3ab2:M (2.59) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73906 3ab2:M (2.59) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73907 3ab2:O (2.59) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73908 3ab2:O (2.59) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73909 3ab4:A (2.47) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73910 3ab4:A (2.47) BS02 LYS 2.7.2.4 GO:0004072 ... P26512 20573952
    73911 3ab4:A (2.47) BS03 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73912 3ab4:C (2.47) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73913 3ab4:C (2.47) BS02 LYS 2.7.2.4 GO:0004072 ... P26512 20573952
    73914 3ab4:C (2.47) BS03 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73915 3ab4:E (2.47) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73916 3ab4:E (2.47) BS02 LYS 2.7.2.4 GO:0004072 ... P26512 20573952
    73917 3ab4:E (2.47) BS03 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73918 3ab4:G (2.47) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73919 3ab4:G (2.47) BS02 LYS 2.7.2.4 GO:0004072 ... P26512 20573952
    73920 3ab4:G (2.47) BS03 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73921 3ab4:I (2.47) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73922 3ab4:I (2.47) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73923 3ab4:K (2.47) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73924 3ab4:K (2.47) BS02 LYS 2.7.2.4 GO:0004072 ... P26512 20573952
    73925 3ab4:K (2.47) BS03 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73926 3ab4:M (2.47) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73927 3ab4:M (2.47) BS02 LYS 2.7.2.4 GO:0004072 ... P26512 20573952
    73928 3ab4:M (2.47) BS03 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73929 3ab4:O (2.47) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73930 3ab4:O (2.47) BS02 LYS 2.7.2.4 GO:0004072 ... P26512 20573952
    73931 3ab4:O (2.47) BS03 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    73932 3ab5:A (1.18) BS01 FES ? GO:0009055 ... Q85FT5 N/A
    73933 3ab5:B (1.18) BS01 FES ? GO:0009055 ... Q85FT5 N/A
    73934 3ab9:A (1.65) BS01 CA ? GO:0005737 ... P0A6T9 20375021
    73935 3abd:A (1.9) BS01 peptide ? GO:0000122 ... Q9UI95 20164194
    73936 3abd:B (1.9) BS01 peptide ? GO:0000122 ... Q9UI95 20164194
    73937 3abe:C (2.6) BS01 peptide ? GO:0000122 ... Q9UI95 20164194
    73938 3abk:A (2.0) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20208153
    73939 3abk:A (2.0) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20208153
    73940 3abk:A (2.0) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20208153
    73941 3abk:A (2.0) BS04 CU 7.1.1.9 GO:0004129 ... P00396 20208153
    73942 3abk:A (2.0) BS05 MG 7.1.1.9 GO:0004129 ... P00396 20208153
    73943 3abk:B (2.0) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 20208153
    73944 3abk:B (2.0) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 20208153
    73945 3abk:C (2.0) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20208153
    73946 3abk:F (2.0) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 20208153
    73947 3abk:G (2.0) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 20208153
    73948 3abk:M (2.0) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 20208153
    73949 3abk:N (2.0) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20208153
    73950 3abk:N (2.0) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20208153
    73951 3abk:N (2.0) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20208153
    73952 3abk:N (2.0) BS04 CU 7.1.1.9 GO:0004129 ... P00396 20208153
    73953 3abk:N (2.0) BS05 MG 7.1.1.9 GO:0004129 ... P00396 20208153
    73954 3abk:O (2.0) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 20208153
    73955 3abk:P (2.0) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20208153
    73956 3abk:Q (2.0) BS01 DMU 1.9.3.1 GO:0006123 ... P00423 20208153
    73957 3abk:S (2.0) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 20208153
    73958 3abk:T (2.0) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 20208153
    73959 3abk:Z (2.0) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 20208153
    73960 3abl:A (2.1) BS01 CU 7.1.1.9 GO:0004129 ... P00396 19164527
    73961 3abl:A (2.1) BS02 PER 7.1.1.9 GO:0004129 ... P00396 19164527
    73962 3abl:A (2.1) BS03 MG 7.1.1.9 GO:0004129 ... P00396 19164527
    73963 3abl:A (2.1) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    73964 3abl:A (2.1) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    73965 3abl:B (2.1) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 19164527
    73966 3abl:B (2.1) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 19164527
    73967 3abl:C (2.1) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 19164527
    73968 3abl:F (2.1) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 19164527
    73969 3abl:M (2.1) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 19164527
    73970 3abl:N (2.1) BS01 CU 7.1.1.9 GO:0004129 ... P00396 19164527
    73971 3abl:N (2.1) BS02 PER 7.1.1.9 GO:0004129 ... P00396 19164527
    73972 3abl:N (2.1) BS03 MG 7.1.1.9 GO:0004129 ... P00396 19164527
    73973 3abl:N (2.1) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    73974 3abl:N (2.1) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    73975 3abl:O (2.1) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 19164527
    73976 3abl:P (2.1) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 19164527
    73977 3abl:S (2.1) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 19164527
    73978 3abl:Z (2.1) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 19164527
    73979 3abm:A (1.95) BS01 CU 7.1.1.9 GO:0004129 ... P00396 19164527
    73980 3abm:A (1.95) BS02 PER 7.1.1.9 GO:0004129 ... P00396 19164527
    73981 3abm:A (1.95) BS03 MG 7.1.1.9 GO:0004129 ... P00396 19164527
    73982 3abm:A (1.95) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    73983 3abm:A (1.95) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    73984 3abm:B (1.95) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 19164527
    73985 3abm:B (1.95) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 19164527
    73986 3abm:C (1.95) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 19164527
    73987 3abm:F (1.95) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 19164527
    73988 3abm:M (1.95) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 19164527
    73989 3abm:N (1.95) BS01 CU 7.1.1.9 GO:0004129 ... P00396 19164527
    73990 3abm:N (1.95) BS02 PER 7.1.1.9 GO:0004129 ... P00396 19164527
    73991 3abm:N (1.95) BS03 MG 7.1.1.9 GO:0004129 ... P00396 19164527
    73992 3abm:N (1.95) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    73993 3abm:N (1.95) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    73994 3abm:O (1.95) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 19164527
    73995 3abm:P (1.95) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 19164527
    73996 3abm:Q (1.95) BS01 DMU 1.9.3.1 GO:0006123 ... P00423 19164527
    73997 3abm:S (1.95) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 19164527
    73998 3abm:Z (1.95) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 19164527
    73999 3abo:A (2.1) BS01 ETA 4.3.1.7 GO:0005829 ... P0AEJ6 20519496
    74000 3abo:A (2.1) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 20519496
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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