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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    200401 5ch7:A (2.2) BS05 ZN ? GO:0009061 ... G8QM55 26940877
    200402 5ch7:A (2.2) BS06 SO3 ? GO:0009061 ... G8QM55 26940877
    200403 5ch7:B (2.2) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    200404 5ch7:B (2.2) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    200405 5ch7:B (2.2) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    200406 5ch7:B (2.2) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    200407 5ch7:C (2.2) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    200408 5ch7:C (2.2) BS02 MO ? GO:0009061 ... G8QM55 26940877
    200409 5ch7:C (2.2) BS03 MGD ? GO:0009061 ... G8QM55 26940877
    200410 5ch7:C (2.2) BS04 MD1 ? GO:0009061 ... G8QM55 26940877
    200411 5ch7:C (2.2) BS05 SO3 ? GO:0009061 ... G8QM55 26940877
    200412 5ch7:C (2.2) BS06 ZN ? GO:0009061 ... G8QM55 26940877
    200413 5ch7:D (2.2) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    200414 5ch7:D (2.2) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    200415 5ch7:D (2.2) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    200416 5ch7:D (2.2) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    200417 5ch7:E (2.2) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    200418 5ch7:E (2.2) BS02 MO ? GO:0009061 ... G8QM55 26940877
    200419 5ch7:E (2.2) BS03 MGD ? GO:0009061 ... G8QM55 26940877
    200420 5ch7:E (2.2) BS04 MD1 ? GO:0009061 ... G8QM55 26940877
    200421 5ch7:E (2.2) BS05 ZN ? GO:0009061 ... G8QM55 26940877
    200422 5ch7:F (2.2) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    200423 5ch7:F (2.2) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    200424 5ch7:F (2.2) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    200425 5ch7:F (2.2) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    200426 5ch8:A (1.62) BS01 ZN 3.1.1.- GO:0005576 ... P61869 N/A
    200427 5ch8:A (1.62) BS02 ZN 3.1.1.- GO:0005576 ... P61869 N/A
    200428 5chc:A (2.38) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    200429 5chc:A (2.38) BS02 MO ? GO:0009061 ... G8QM55 26940877
    200430 5chc:A (2.38) BS03 MGD ? GO:0009061 ... G8QM55 26940877
    200431 5chc:A (2.38) BS04 MD1 ? GO:0009061 ... G8QM55 26940877
    200432 5chc:A (2.38) BS05 BSY ? GO:0009061 ... G8QM55 26940877
    200433 5chc:B (2.38) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    200434 5chc:B (2.38) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    200435 5chc:B (2.38) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    200436 5chc:B (2.38) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    200437 5chc:C (2.38) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    200438 5chc:C (2.38) BS02 MO ? GO:0009061 ... G8QM55 26940877
    200439 5chc:C (2.38) BS03 MGD ? GO:0009061 ... G8QM55 26940877
    200440 5chc:C (2.38) BS04 MD1 ? GO:0009061 ... G8QM55 26940877
    200441 5chc:C (2.38) BS05 BSY ? GO:0009061 ... G8QM55 26940877
    200442 5chc:D (2.38) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    200443 5chc:D (2.38) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    200444 5chc:D (2.38) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    200445 5chc:D (2.38) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    200446 5chc:E (2.38) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    200447 5chc:E (2.38) BS02 MO ? GO:0009061 ... G8QM55 26940877
    200448 5chc:E (2.38) BS03 MGD ? GO:0009061 ... G8QM55 26940877
    200449 5chc:E (2.38) BS04 MD1 ? GO:0009061 ... G8QM55 26940877
    200450 5chc:E (2.38) BS05 BSY ? GO:0009061 ... G8QM55 26940877
    200451 5chc:F (2.38) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    200452 5chc:F (2.38) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    200453 5chc:F (2.38) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    200454 5chc:F (2.38) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    200455 5chj:A (1.358) BS01 SM2 3.5.2.6 GO:0008800 ... Q9L387 32349291
    200456 5chj:A (1.358) BS02 ZN 3.5.2.6 GO:0008800 ... Q9L387 32349291
    200457 5chj:A (1.358) BS03 ZN 3.5.2.6 GO:0008800 ... Q9L387 32349291
    200458 5chj:B (1.358) BS01 SM2 3.5.2.6 GO:0008800 ... Q9L387 32349291
    200459 5chj:B (1.358) BS02 ZN 3.5.2.6 GO:0008800 ... Q9L387 32349291
    200460 5chj:B (1.358) BS03 ZN 3.5.2.6 GO:0008800 ... Q9L387 32349291
    200461 5chk:A (2.2) BS01 55R ? GO:0005576 ... P02701 N/A PDBbind: -logKd/Ki=5.39, Kd=4.12uM
    200462 5chm:A (1.9) BS01 CB4 3.5.2.6 GO:0008800 ... Q9L387 32349291
    200463 5chm:A (1.9) BS02 ZN 3.5.2.6 GO:0008800 ... Q9L387 32349291
    200464 5chu:B (1.1) BS01 ZN 3.5.2.6 GO:0008800 ... Q9L387 N/A
    200465 5chy:A (2.0) BS01 CA ? GO:0000156 ... P0AE67 9030562
    200466 5ci2:A (2.25) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 27276098
    200467 5ci8:A (2.328) BS01 53Y ? GO:0003714 ... P50616 26518565
    200468 5ci9:A (2.3) BS01 549 ? GO:0003714 ... P50616 26518565
    200469 5ci9:A (2.3) BS02 549 ? GO:0003714 ... P50616 26518565
    200470 5cib:B (3.011) BS01 HEC ? GO:0005515 ... P00044 27499202
    200471 5cib:D (3.011) BS01 HEC ? GO:0005515 ... P00044 27499202
    200472 5cic:B (2.103) BS01 HEC ? GO:0005515 ... P00044 27499202
    200473 5cic:D (2.103) BS01 HEC ? GO:0005515 ... P00044 27499202
    200474 5cid:B (2.763) BS01 HEC ? GO:0005515 ... P00044 27499202
    200475 5cid:D (2.763) BS01 HEC ? GO:0005515 ... P00044 27499202
    200476 5cie:B (2.6) BS01 HEC ? GO:0005515 ... P00044 27499202
    200477 5cie:D (2.6) BS01 HEC ? GO:0005515 ... P00044 27499202
    200478 5cif:B (2.01) BS01 HEC ? GO:0005515 ... P00044 27499202
    200479 5cif:D (2.01) BS01 HEC ? GO:0005515 ... P00044 27499202
    200480 5cig:B (2.06) BS01 HEC ? GO:0005515 ... P00044 27499202
    200481 5cig:D (2.06) BS01 HEC ? GO:0005515 ... P00044 27499202
    200482 5cih:B (2.6) BS01 HEC ? GO:0005515 ... P00044 27499202
    200483 5cih:D (2.6) BS01 HEC ? GO:0005515 ... P00044 27499202
    200484 5ciq:A (1.65) BS01 GDP 3.6.5.- GO:0000054 ... P62826 26272610
    200485 5ciq:B (1.65) BS01 GDP 3.6.5.- GO:0000054 ... P62826 26272610
    200486 5cit:A (1.75) BS01 GDP 3.6.5.- GO:0000054 ... P62826 26272610
    200487 5cit:B (1.75) BS01 GDP 3.6.5.- GO:0000054 ... P62826 26272610
    200488 5ciw:A (1.75) BS01 GDP 3.6.5.- GO:0000054 ... P62826 26272610
    200489 5ciw:B (1.75) BS01 GDP 3.6.5.- GO:0000054 ... P62826 26272610
    200490 5ciz:A (5.0098) BS01 dna ? GO:0003677 ... P0ACJ8 N/A
    200491 5ciz:A (5.0098) BS02 dna ? GO:0003677 ... P0ACJ8 N/A
    200492 5ciz:A (5.0098) BS03 CMP ? GO:0003677 ... P0ACJ8 N/A
    200493 5cj2:A (1.75) BS01 GDP 3.6.5.- GO:0000054 ... P62826 26272610
    200494 5cj2:B (1.75) BS01 GDP 3.6.5.- GO:0000054 ... P62826 26272610
    200495 5cj2:C (1.75) BS01 GDP 3.6.5.- GO:0000054 ... P62826 26272610
    200496 5cj2:D (1.75) BS01 GDP 3.6.5.- GO:0000054 ... P62826 26272610
    200497 5cj2:E (1.75) BS01 GDP 3.6.5.- GO:0000054 ... P62826 26272610
    200498 5cj2:F (1.75) BS01 GDP 3.6.5.- GO:0000054 ... P62826 26272610
    200499 5cj2:G (1.75) BS01 GDP 3.6.5.- GO:0000054 ... P62826 26272610
    200500 5cj2:H (1.75) BS01 GDP 3.6.5.- GO:0000054 ... P62826 26272610
    200501 5cjh:A (1.6) BS01 522 1.11.1.21 GO:0004096 ... A4QUT2 26290940 MOAD: Kd=14.4uM
    200502 5cjh:B (1.6) BS01 522 1.11.1.21 GO:0004096 ... A4QUT2 26290940 MOAD: Kd=14.4uM
    200503 5cjm:A (2.13) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    200504 5cjm:A (2.13) BS02 4WL 2.3.3.9 GO:0000287 ... P9WK17 27738104
    200505 5cjn:A (2.19) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    200506 5cjn:A (2.19) BS02 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    200507 5cjn:A (2.19) BS03 52F 2.3.3.9 GO:0000287 ... P9WK17 27738104
    200508 5cjo:A (3.287) BS01 peptide 3.4.24.56 GO:0001618 ... P14735 29273204
    200509 5cjo:A (3.287) BS02 ZN 3.4.24.56 GO:0001618 ... P14735 29273204
    200510 5cjp:A (2.6) BS01 GTP 3.6.5.2 GO:0000139 ... P60953 27524202
    200511 5cjp:A (2.6) BS02 MG 3.6.5.2 GO:0000139 ... P60953 27524202
    200512 5cjp:B (2.6) BS01 GTP 3.6.5.2 GO:0000139 ... P60953 27524202
    200513 5cjp:B (2.6) BS02 MG 3.6.5.2 GO:0000139 ... P60953 27524202
    200514 5cjp:C (2.6) BS01 GTP 3.6.5.2 GO:0000139 ... P60953 27524202
    200515 5cjp:C (2.6) BS02 MG 3.6.5.2 GO:0000139 ... P60953 27524202
    200516 5cjp:D (2.6) BS01 GTP 3.6.5.2 GO:0000139 ... P60953 27524202
    200517 5cjp:D (2.6) BS02 MG 3.6.5.2 GO:0000139 ... P60953 27524202
    200518 5cjz:A (1.803) BS01 CA ? GO:0016020 ... Q89ZX5 N/A
    200519 5cjz:A (1.803) BS02 GAL ? GO:0016020 ... Q89ZX5 N/A
    200520 5ck1:A (1.835) BS01 CA ? GO:0016020 ... Q89ZX5 N/A
    200521 5ck7:A (2.99) BS01 AMP 2.7.1.147 GO:0005576 ... Q8VDL4 26555263
    200522 5ckr:A (2.95) BS01 57M 2.7.8.13 GO:0005886 ... O66465 27088606 PDBbind: -logKd/Ki=7.76, Kd=17.2nM
    200523 5cks:A (2.1181) BS01 GAL 2.5.1.54 GO:0003849 ... P0AB91 27933795
    200524 5cks:B (2.1181) BS01 GAL 2.5.1.54 GO:0003849 ... P0AB91 27933795
    200525 5cks:B (2.1181) BS02 GAL 2.5.1.54 GO:0003849 ... P0AB91 27933795
    200526 5cks:B (2.1181) BS03 52L 2.5.1.54 GO:0003849 ... P0AB91 27933795 MOAD: Kd=3.1uM
    PDBbind: -logKd/Ki=5.51, Kd=3.1uM
    200527 5cks:C (2.1181) BS01 GAL 2.5.1.54 GO:0003849 ... P0AB91 27933795
    200528 5cks:C (2.1181) BS02 52L 2.5.1.54 GO:0003849 ... P0AB91 27933795 MOAD: Kd=3.1uM
    200529 5cks:D (2.1181) BS01 GAL 2.5.1.54 GO:0003849 ... P0AB91 27933795
    200530 5cku:A (2.1) BS01 FAD 1.14.13.196 GO:0000166 ... E9QYP0 26375201
    200531 5cku:A (2.1) BS02 NAP 1.14.13.196 GO:0000166 ... E9QYP0 26375201
    200532 5cku:A (2.1) BS03 ORN 1.14.13.196 GO:0000166 ... E9QYP0 26375201
    200533 5ckv:A (2.787) BS01 TRP 2.5.1.54 GO:0003849 ... O53512 26776476
    200534 5ckv:A (2.787) BS02 MN 2.5.1.54 GO:0003849 ... O53512 26776476
    200535 5ckv:A (2.787) BS03 PHE 2.5.1.54 GO:0003849 ... O53512 26776476
    200536 5ckv:A (2.787) BS04 PHE 2.5.1.54 GO:0003849 ... O53512 26776476
    200537 5ckv:B (2.787) BS01 PHE 2.5.1.54 GO:0003849 ... O53512 26776476
    200538 5ckv:B (2.787) BS02 MN 2.5.1.54 GO:0003849 ... O53512 26776476
    200539 5ckv:B (2.787) BS03 TYR 2.5.1.54 GO:0003849 ... O53512 26776476
    200540 5ckv:B (2.787) BS04 TRP 2.5.1.54 GO:0003849 ... O53512 26776476
    200541 5ckv:B (2.787) BS05 PHE 2.5.1.54 GO:0003849 ... O53512 26776476
    200542 5ckx:A (2.7) BS01 MN 2.5.1.54 GO:0003849 ... O53512 26776476
    200543 5ckx:A (2.7) BS02 PHE 2.5.1.54 GO:0003849 ... O53512 26776476
    200544 5ckx:B (2.7) BS01 PHE 2.5.1.54 GO:0003849 ... O53512 26776476
    200545 5ckx:B (2.7) BS02 MN 2.5.1.54 GO:0003849 ... O53512 26776476
    200546 5ckx:B (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... O53512 26776476
    200547 5ckx:B (2.7) BS04 TYR 2.5.1.54 GO:0003849 ... O53512 26776476
    200548 5clm:A (2.61) BS01 52K 3.4.23.46 GO:0004190 ... P56817 26378740 PDBbind: -logKd/Ki=7.36, IC50=44nM
    BindingDB: IC50=240nM
    200549 5clq:A (3.2) BS01 GNP 3.6.5.- GO:0000054 ... P62826 26272610
    200550 5clq:A (3.2) BS02 MG 3.6.5.- GO:0000054 ... P62826 26272610
    200551 5clq:C (3.2) BS01 GNP 3.6.5.- GO:0000054 ... P62826 26272610
    200552 5clq:C (3.2) BS02 MG 3.6.5.- GO:0000054 ... P62826 26272610
    200553 5clt:A (2.79) BS01 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200554 5clt:A (2.79) BS02 AC1 2.4.1.18 GO:0003824 ... Q04446 N/A
    200555 5clt:B (2.79) BS01 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200556 5clt:B (2.79) BS02 AC1 2.4.1.18 GO:0003824 ... Q04446 N/A
    200557 5clt:C (2.79) BS01 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200558 5clt:C (2.79) BS02 AC1 2.4.1.18 GO:0003824 ... Q04446 N/A
    200559 5clu:A (1.55) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26507456
    200560 5clu:A (1.55) BS02 S8A 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26507456 MOAD: Ki=78uM
    BindingDB: Ki=78000nM
    200561 5clw:A (2.8) BS01 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200562 5clw:A (2.8) BS02 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200563 5clw:A (2.8) BS03 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200564 5clw:A (2.8) BS04 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200565 5clw:A (2.8) BS05 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200566 5clw:A (2.8) BS06 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200567 5clw:B (2.8) BS01 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200568 5clw:B (2.8) BS02 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200569 5clw:B (2.8) BS03 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200570 5clw:B (2.8) BS04 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200571 5clw:C (2.8) BS01 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200572 5clw:C (2.8) BS02 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200573 5clw:C (2.8) BS03 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200574 5clw:C (2.8) BS04 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200575 5clw:C (2.8) BS05 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200576 5clw:C (2.8) BS06 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    200577 5cm2:M (2.5) BS01 ZN ? GO:0000470 ... Q6C4P5 26438534
    200578 5cm6:A (1.83) BS01 PYR N/A GO:0031317 ... N/A N/A
    200579 5cm6:B (1.83) BS01 PYR N/A GO:0031317 ... N/A N/A
    200580 5cmb:A (1.34) BS01 GLY ? GO:0015276 ... A0A0R4I973 27791085 MOAD: Kd=28.3nM
    200581 5cmb:A (1.34) BS02 MG ? GO:0015276 ... A0A0R4I973 27791085
    200582 5cmb:B (1.34) BS01 MG ? GO:0015276 ... A0A0R4I973 27791085
    200583 5cmb:B (1.34) BS02 GLY ? GO:0015276 ... A0A0R4I973 27791085 MOAD: Kd=28.3nM
    200584 5cmc:A (1.28) BS01 GLY ? GO:0015276 ... A0A0R4I973 27791085 MOAD: Kd=2.48uM
    200585 5cmc:A (1.28) BS02 MG ? GO:0015276 ... A0A0R4I973 27791085
    200586 5cmc:B (1.28) BS01 GLY ? GO:0015276 ... A0A0R4I973 27791085 MOAD: Kd=2.48uM
    200587 5cmc:B (1.28) BS02 MG ? GO:0015276 ... A0A0R4I973 27791085
    200588 5cmk:A (1.801) BS01 GLU ? GO:0015276 ... P42260 27580033
    200589 5cmk:B (1.801) BS01 LY5 ? GO:0015276 ... P42260 27580033 MOAD: ic50=30nM
    200590 5cmm:A (1.271) BS01 SYM ? GO:0015276 ... P42260
    Q13002    		 27580033
    200591 5cmq:A (1.935) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 26305584
    200592 5cmq:A (1.935) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 26305584
    200593 5cmr:A (3.792) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 26305584
    200594 5cmv:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 26359336
    200595 5cn4:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 26359336
    200596 5cn5:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 26359336
    200597 5cn6:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 26359336
    200598 5cn7:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 26359336
    200599 5cn8:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 26359336
    200600 5cn9:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 26359336
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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