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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    804401 8uk3:l (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804402 8uk3:l (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804403 8uk3:l (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804404 8uk3:m (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804405 8uk3:m (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804406 8uk3:m (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804407 8uk3:n (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804408 8uk3:n (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804409 8uk3:n (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804410 8uk3:o (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804411 8uk3:o (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804412 8uk3:o (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804413 8uk3:p (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804414 8uk3:p (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804415 8uk3:p (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804416 8uk3:q (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804417 8uk3:q (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804418 8uk3:q (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804419 8uk3:r (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804420 8uk3:r (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804421 8uk3:r (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804422 8uk4:A (3.02) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804423 8uk4:A (3.02) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804424 8uk4:A (3.02) BS03 1FZ 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804425 8uk4:A (3.02) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804426 8uk6:A (2.73) BS01 ZN 6.1.1.18 GO:0000166 ... A0A1D8PQM9 38402621
    804427 8uk6:A (2.73) BS02 WVK 6.1.1.18 GO:0000166 ... A0A1D8PQM9 38402621
    804428 8uk9:A (3.1) BS01 dna ? GO:0003677 ... P04527 38177685
    804429 8uk9:B (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    804430 8uk9:B (3.1) BS02 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    804431 8uk9:B (3.1) BS03 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    804432 8uk9:B (3.1) BS04 MG 3.6.4.- GO:0003677 ... P04526 38177685
    804433 8uk9:C (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    804434 8uk9:C (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    804435 8uk9:C (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    804436 8uk9:C (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    804437 8uk9:D (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    804438 8uk9:D (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    804439 8uk9:D (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    804440 8uk9:D (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    804441 8uk9:E (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    804442 8uk9:E (3.1) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    804443 8uk9:K (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    804444 8uk9:K (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    804445 8uk9:K (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    804446 8uk9:K (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    804447 8uk9:L (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    804448 8uk9:L (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    804449 8uk9:L (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    804450 8uk9:L (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    804451 8uk9:M (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    804452 8uk9:M (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    804453 8uk9:M (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    804454 8uk9:M (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    804455 8uk9:N (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    804456 8uk9:N (3.1) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    804457 8uk9:Q (3.1) BS01 dna ? GO:0003677 ... P04527 38177685
    804458 8uk9:Q (3.1) BS02 dna ? GO:0003677 ... P04527 38177685
    804459 8uke:A (2.4) BS01 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    804460 8uke:A (2.4) BS02 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    804461 8uke:A (2.4) BS03 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    804462 8uke:B (2.4) BS01 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    804463 8uke:B (2.4) BS02 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    804464 8uke:B (2.4) BS03 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    804465 8uke:C (2.4) BS01 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    804466 8uke:C (2.4) BS02 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    804467 8uke:C (2.4) BS03 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    804468 8uke:D (2.4) BS01 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    804469 8uke:D (2.4) BS02 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    804470 8uke:E (2.4) BS01 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    804471 8uke:E (2.4) BS02 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    804472 8uke:E (2.4) BS03 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    804473 8uke:F (2.4) BS01 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    804474 8uke:F (2.4) BS02 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    804475 8ukq:A (3.5) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    804476 8ukq:A (3.5) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    804477 8ukq:A (3.5) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    804478 8ukq:A (3.5) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    804479 8ukq:A (3.5) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    804480 8ukq:B (3.5) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    804481 8ukq:B (3.5) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    804482 8ukq:B (3.5) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    804483 8ukq:C (3.5) BS01 ZN ? GO:0000428 ... P16370 38393762
    804484 8ukq:I (3.5) BS01 ZN ? GO:0000428 ... P27999 38393762
    804485 8ukq:I (3.5) BS02 ZN ? GO:0000428 ... P27999 38393762
    804486 8ukq:J (3.5) BS01 ZN ? GO:0000428 ... P22139 38393762
    804487 8ukq:L (3.5) BS01 ZN ? GO:0000428 ... P40422 38393762
    804488 8ukr:A (3.78) BS01 rna 2.7.7.6 GO:0000428 ... P04050 38393762
    804489 8ukr:A (3.78) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    804490 8ukr:A (3.78) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    804491 8ukr:A (3.78) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    804492 8ukr:A (3.78) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    804493 8ukr:A (3.78) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    804494 8ukr:B (3.78) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    804495 8ukr:B (3.78) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    804496 8ukr:B (3.78) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    804497 8ukr:B (3.78) BS04 ATP 2.7.7.6 GO:0000428 ... P08518 38393762
    804498 8ukr:C (3.78) BS01 ZN ? GO:0000428 ... P16370 38393762
    804499 8ukr:I (3.78) BS01 ZN ? GO:0000428 ... P27999 38393762
    804500 8ukr:I (3.78) BS02 ZN ? GO:0000428 ... P27999 38393762
    804501 8ukr:J (3.78) BS01 ZN ? GO:0000428 ... P22139 38393762
    804502 8ukr:L (3.78) BS01 ZN ? GO:0000428 ... P40422 38393762
    804503 8uks:A (3.4) BS01 rna 2.7.7.6 GO:0000428 ... P04050 38393762
    804504 8uks:A (3.4) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    804505 8uks:A (3.4) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    804506 8uks:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    804507 8uks:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    804508 8uks:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    804509 8uks:A (3.4) BS07 CTP 2.7.7.6 GO:0000428 ... P04050 38393762
    804510 8uks:B (3.4) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    804511 8uks:B (3.4) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    804512 8uks:B (3.4) BS03 CTP 2.7.7.6 GO:0000428 ... P08518 38393762
    804513 8uks:B (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    804514 8uks:C (3.4) BS01 ZN ? GO:0000428 ... P16370 38393762
    804515 8uks:I (3.4) BS01 ZN ? GO:0000428 ... P27999 38393762
    804516 8uks:I (3.4) BS02 ZN ? GO:0000428 ... P27999 38393762
    804517 8uks:J (3.4) BS01 ZN ? GO:0000428 ... P22139 38393762
    804518 8uks:L (3.4) BS01 ZN ? GO:0000428 ... P40422 38393762
    804519 8ukt:A (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P04050 38393762
    804520 8ukt:A (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    804521 8ukt:A (3.6) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    804522 8ukt:A (3.6) BS04 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    804523 8ukt:A (3.6) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    804524 8ukt:A (3.6) BS06 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    804525 8ukt:B (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    804526 8ukt:B (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    804527 8ukt:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    804528 8ukt:C (3.6) BS01 ZN ? GO:0000428 ... P16370 38393762
    804529 8ukt:I (3.6) BS01 ZN ? GO:0000428 ... P27999 38393762
    804530 8ukt:I (3.6) BS02 ZN ? GO:0000428 ... P27999 38393762
    804531 8ukt:J (3.6) BS01 ZN ? GO:0000428 ... P22139 38393762
    804532 8ukt:L (3.6) BS01 ZN ? GO:0000428 ... P40422 38393762
    804533 8uku:A (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P04050 38393762
    804534 8uku:A (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    804535 8uku:A (3.6) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    804536 8uku:A (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    804537 8uku:A (3.6) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    804538 8uku:A (3.6) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    804539 8uku:B (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    804540 8uku:B (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    804541 8uku:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    804542 8uku:B (3.6) BS04 POP 2.7.7.6 GO:0000428 ... P08518 38393762
    804543 8uku:C (3.6) BS01 ZN ? GO:0000428 ... P16370 38393762
    804544 8uku:I (3.6) BS01 ZN ? GO:0000428 ... P27999 38393762
    804545 8uku:I (3.6) BS02 ZN ? GO:0000428 ... P27999 38393762
    804546 8uku:J (3.6) BS01 ZN ? GO:0000428 ... P22139 38393762
    804547 8uku:L (3.6) BS01 ZN ? GO:0000428 ... P40422 38393762
    804548 8ukz:A (1.95) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    804549 8ukz:A (1.95) BS02 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    804550 8ukz:A (1.95) BS03 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    804551 8ukz:B (1.95) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    804552 8ukz:B (1.95) BS02 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    804553 8ukz:C (1.95) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    804554 8ukz:C (1.95) BS02 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    804555 8uld:A (1.8) BS01 WYR 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0C6X7 38309201
    804556 8ulg:A (3.2) BS01 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    804557 8ulg:A (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    804558 8ulg:B (3.2) BS01 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    804559 8ulg:B (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    804560 8um3:A (1.925) BS01 W41 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... Q32ZE1 N/A
    804561 8umt:B (3.33) BS01 AGS ? GO:0003677 ... P35250 38669181
    804562 8umt:C (3.33) BS01 MG ? GO:0003677 ... P40937 38669181
    804563 8umt:C (3.33) BS02 AGS ? GO:0003677 ... P40937 38669181
    804564 8umt:D (3.33) BS01 AGS ? GO:0003677 ... P35249 38669181
    804565 8umt:E (3.33) BS01 ADP ? GO:0000731 ... P40938 38669181
    804566 8umu:A (3.16) BS01 AGS ? GO:0003677 ... Q8WVB6 38669181
    804567 8umu:B (3.16) BS01 AGS ? GO:0003677 ... P35250 38669181
    804568 8umu:B (3.16) BS02 AGS ? GO:0003677 ... P35250 38669181
    804569 8umu:C (3.16) BS01 AGS ? GO:0003677 ... P40937 38669181
    804570 8umu:E (3.16) BS01 ADP ? GO:0000731 ... P40938 38669181
    804571 8umv:A (2.75) BS01 dna ? GO:0003677 ... Q8WVB6 38669181
    804572 8umv:A (2.75) BS02 dna ? GO:0003677 ... Q8WVB6 38669181
    804573 8umv:A (2.75) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    804574 8umv:B (2.75) BS01 dna ? GO:0003677 ... P35250 38669181
    804575 8umv:B (2.75) BS02 AGS ? GO:0003677 ... P35250 38669181
    804576 8umv:B (2.75) BS03 AGS ? GO:0003677 ... P35250 38669181
    804577 8umv:C (2.75) BS01 dna ? GO:0003677 ... P40937 38669181
    804578 8umv:C (2.75) BS02 AGS ? GO:0003677 ... P40937 38669181
    804579 8umv:C (2.75) BS03 AGS ? GO:0003677 ... P40937 38669181
    804580 8umv:D (2.75) BS01 dna ? GO:0003677 ... P35249 38669181
    804581 8umv:D (2.75) BS02 AGS ? GO:0003677 ... P35249 38669181
    804582 8umv:D (2.75) BS03 AGS ? GO:0003677 ... P35249 38669181
    804583 8umv:E (2.75) BS01 dna ? GO:0000731 ... P40938 38669181
    804584 8umv:E (2.75) BS02 AGS ? GO:0000731 ... P40938 38669181
    804585 8umv:E (2.75) BS03 ADP ? GO:0000731 ... P40938 38669181
    804586 8umw:A (2.93) BS01 dna ? GO:0003677 ... Q8WVB6 38669181
    804587 8umw:A (2.93) BS02 dna ? GO:0003677 ... Q8WVB6 38669181
    804588 8umw:A (2.93) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    804589 8umw:B (2.93) BS01 AGS ? GO:0003677 ... P35250 38669181
    804590 8umw:B (2.93) BS02 AGS ? GO:0003677 ... P35250 38669181
    804591 8umw:C (2.93) BS01 dna ? GO:0003677 ... P40937 38669181
    804592 8umw:C (2.93) BS02 AGS ? GO:0003677 ... P40937 38669181
    804593 8umw:C (2.93) BS03 AGS ? GO:0003677 ... P40937 38669181
    804594 8umw:D (2.93) BS01 dna ? GO:0003677 ... P35249 38669181
    804595 8umw:D (2.93) BS02 AGS ? GO:0003677 ... P35249 38669181
    804596 8umw:D (2.93) BS03 MG ? GO:0003677 ... P35249 38669181
    804597 8umw:D (2.93) BS04 AGS ? GO:0003677 ... P35249 38669181
    804598 8umw:E (2.93) BS01 dna ? GO:0000731 ... P40938 38669181
    804599 8umw:E (2.93) BS02 AGS ? GO:0000731 ... P40938 38669181
    804600 8umw:E (2.93) BS03 ADP ? GO:0000731 ... P40938 38669181
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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