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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    796801 8sqw:C (2.16) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796802 8sqw:C (2.16) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796803 8sqw:C (2.16) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796804 8sqw:C (2.16) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796805 8sqw:E (2.16) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    796806 8sqw:E (2.16) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    796807 8sqw:G (2.16) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796808 8sqw:G (2.16) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796809 8sqw:G (2.16) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796810 8sqw:G (2.16) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796811 8sqw:I (2.16) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    796812 8sqw:I (2.16) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    796813 8sqw:K (2.16) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796814 8sqw:K (2.16) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796815 8sqw:K (2.16) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796816 8sqw:K (2.16) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796817 8sr1:A (2.18) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    796818 8sr1:A (2.18) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    796819 8sr1:C (2.18) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796820 8sr1:C (2.18) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796821 8sr1:C (2.18) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796822 8sr1:C (2.18) BS04 WIY 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796823 8sr1:E (2.18) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    796824 8sr1:E (2.18) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    796825 8sr1:G (2.18) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796826 8sr1:G (2.18) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796827 8sr1:G (2.18) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796828 8sr1:G (2.18) BS04 WIY 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796829 8sr1:I (2.18) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    796830 8sr1:I (2.18) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    796831 8sr1:K (2.18) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796832 8sr1:K (2.18) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796833 8sr1:K (2.18) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796834 8sr1:K (2.18) BS04 WIY 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796835 8sr2:C (2.36) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 N/A
    796836 8sr2:C (2.36) BS02 CU 1.14.13.25 GO:0004497 ... Q603F1 N/A
    796837 8sr2:C (2.36) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 N/A
    796838 8sr2:C (2.36) BS04 HXG 1.14.13.25 GO:0004497 ... Q603F1 N/A
    796839 8sr2:G (2.36) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 N/A
    796840 8sr2:G (2.36) BS02 CU 1.14.13.25 GO:0004497 ... Q603F1 N/A
    796841 8sr2:G (2.36) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 N/A
    796842 8sr2:G (2.36) BS04 HXG 1.14.13.25 GO:0004497 ... Q603F1 N/A
    796843 8sr2:K (2.36) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 N/A
    796844 8sr2:K (2.36) BS02 CU 1.14.13.25 GO:0004497 ... Q603F1 N/A
    796845 8sr2:K (2.36) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 N/A
    796846 8sr2:K (2.36) BS04 HXG 1.14.13.25 GO:0004497 ... Q603F1 N/A
    796847 8sr4:A (3.12) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    796848 8sr4:A (3.12) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    796849 8sr4:C (3.12) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796850 8sr4:E (3.12) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    796851 8sr4:E (3.12) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    796852 8sr4:G (3.12) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796853 8sr4:I (3.12) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    796854 8sr4:I (3.12) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    796855 8sr4:K (3.12) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    796856 8sr7:A (1.97) BS01 RP5 ? GO:0005216 ... F2UB89 38773335
    796857 8sr7:A (1.97) BS02 AMP ? GO:0005216 ... F2UB89 38773335
    796858 8sr7:A (1.97) BS03 MG ? GO:0005216 ... F2UB89 38773335
    796859 8sr7:A (1.97) BS04 MG ? GO:0005216 ... F2UB89 38773335
    796860 8sr7:A (1.97) BS05 MG ? GO:0005216 ... F2UB89 38773335
    796861 8sr7:A (1.97) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    796862 8sr7:A (1.97) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    796863 8sr7:A (1.97) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    796864 8sr7:A (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    796865 8sr7:B (1.97) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796866 8sr7:B (1.97) BS02 RP5 ? GO:0005216 ... F2UB89 38773335
    796867 8sr7:B (1.97) BS03 AMP ? GO:0005216 ... F2UB89 38773335
    796868 8sr7:B (1.97) BS04 MG ? GO:0005216 ... F2UB89 38773335
    796869 8sr7:B (1.97) BS05 MG ? GO:0005216 ... F2UB89 38773335
    796870 8sr7:B (1.97) BS06 MG ? GO:0005216 ... F2UB89 38773335
    796871 8sr7:B (1.97) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    796872 8sr7:B (1.97) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    796873 8sr7:B (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    796874 8sr7:C (1.97) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796875 8sr7:C (1.97) BS02 RP5 ? GO:0005216 ... F2UB89 38773335
    796876 8sr7:C (1.97) BS03 AMP ? GO:0005216 ... F2UB89 38773335
    796877 8sr7:C (1.97) BS04 MG ? GO:0005216 ... F2UB89 38773335
    796878 8sr7:C (1.97) BS05 MG ? GO:0005216 ... F2UB89 38773335
    796879 8sr7:C (1.97) BS06 MG ? GO:0005216 ... F2UB89 38773335
    796880 8sr7:C (1.97) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    796881 8sr7:C (1.97) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    796882 8sr7:C (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    796883 8sr7:D (1.97) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796884 8sr7:D (1.97) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    796885 8sr7:D (1.97) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    796886 8sr7:D (1.97) BS04 RP5 ? GO:0005216 ... F2UB89 38773335
    796887 8sr7:D (1.97) BS05 AMP ? GO:0005216 ... F2UB89 38773335
    796888 8sr7:D (1.97) BS06 MG ? GO:0005216 ... F2UB89 38773335
    796889 8sr7:D (1.97) BS07 MG ? GO:0005216 ... F2UB89 38773335
    796890 8sr7:D (1.97) BS08 MG ? GO:0005216 ... F2UB89 38773335
    796891 8sr7:D (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    796892 8sr8:A (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796893 8sr8:A (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    796894 8sr8:A (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    796895 8sr8:A (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    796896 8sr8:B (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796897 8sr8:B (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    796898 8sr8:B (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    796899 8sr8:B (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    796900 8sr8:C (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796901 8sr8:C (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    796902 8sr8:C (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    796903 8sr8:C (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    796904 8sr8:D (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796905 8sr8:D (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    796906 8sr8:D (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    796907 8sr8:D (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    796908 8sr9:A (3.05) BS01 MG ? GO:0005216 ... F2UB89 38773335
    796909 8sr9:A (3.05) BS02 MG ? GO:0005216 ... F2UB89 38773335
    796910 8sr9:A (3.05) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    796911 8sr9:A (3.05) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    796912 8sr9:A (3.05) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    796913 8sr9:A (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    796914 8sr9:B (3.05) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796915 8sr9:B (3.05) BS02 MG ? GO:0005216 ... F2UB89 38773335
    796916 8sr9:B (3.05) BS03 MG ? GO:0005216 ... F2UB89 38773335
    796917 8sr9:B (3.05) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    796918 8sr9:B (3.05) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    796919 8sr9:B (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    796920 8sr9:C (3.05) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796921 8sr9:C (3.05) BS02 MG ? GO:0005216 ... F2UB89 38773335
    796922 8sr9:C (3.05) BS03 MG ? GO:0005216 ... F2UB89 38773335
    796923 8sr9:C (3.05) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    796924 8sr9:C (3.05) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    796925 8sr9:C (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    796926 8sr9:D (3.05) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796927 8sr9:D (3.05) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    796928 8sr9:D (3.05) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    796929 8sr9:D (3.05) BS04 MG ? GO:0005216 ... F2UB89 38773335
    796930 8sr9:D (3.05) BS05 MG ? GO:0005216 ... F2UB89 38773335
    796931 8sr9:D (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    796932 8sra:A (2.93) BS01 CA ? GO:0005216 ... F2UB89 38773335
    796933 8sra:A (2.93) BS02 CA ? GO:0005216 ... F2UB89 38773335
    796934 8sra:A (2.93) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    796935 8sra:A (2.93) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    796936 8sra:A (2.93) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    796937 8sra:A (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    796938 8sra:B (2.93) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796939 8sra:B (2.93) BS02 CA ? GO:0005216 ... F2UB89 38773335
    796940 8sra:B (2.93) BS03 CA ? GO:0005216 ... F2UB89 38773335
    796941 8sra:B (2.93) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    796942 8sra:B (2.93) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    796943 8sra:B (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    796944 8sra:C (2.93) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796945 8sra:C (2.93) BS02 CA ? GO:0005216 ... F2UB89 38773335
    796946 8sra:C (2.93) BS03 CA ? GO:0005216 ... F2UB89 38773335
    796947 8sra:C (2.93) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    796948 8sra:C (2.93) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    796949 8sra:C (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    796950 8sra:D (2.93) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796951 8sra:D (2.93) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    796952 8sra:D (2.93) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    796953 8sra:D (2.93) BS04 CA ? GO:0005216 ... F2UB89 38773335
    796954 8sra:D (2.93) BS05 CA ? GO:0005216 ... F2UB89 38773335
    796955 8sra:D (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    796956 8srb:A (2.82) BS01 APR ? GO:0005216 ... F2UB89 38773335
    796957 8srb:A (2.82) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    796958 8srb:A (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    796959 8srb:A (2.82) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    796960 8srb:A (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    796961 8srb:B (2.82) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796962 8srb:B (2.82) BS02 APR ? GO:0005216 ... F2UB89 38773335
    796963 8srb:B (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    796964 8srb:B (2.82) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    796965 8srb:B (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    796966 8srb:C (2.82) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796967 8srb:C (2.82) BS02 APR ? GO:0005216 ... F2UB89 38773335
    796968 8srb:C (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    796969 8srb:C (2.82) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    796970 8srb:C (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    796971 8srb:D (2.82) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796972 8srb:D (2.82) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    796973 8srb:D (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    796974 8srb:D (2.82) BS04 APR ? GO:0005216 ... F2UB89 38773335
    796975 8srb:D (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    796976 8src:A (2.92) BS01 APR ? GO:0005216 ... F2UB89 38773335
    796977 8src:A (2.92) BS02 CA ? GO:0005216 ... F2UB89 38773335
    796978 8src:A (2.92) BS03 CA ? GO:0005216 ... F2UB89 38773335
    796979 8src:A (2.92) BS04 CA ? GO:0005216 ... F2UB89 38773335
    796980 8src:A (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    796981 8src:A (2.92) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    796982 8src:A (2.92) BS07 APR ? GO:0005216 ... F2UB89 38773335
    796983 8src:A (2.92) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    796984 8src:A (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    796985 8src:A (2.92) BS10 CLR ? GO:0005216 ... F2UB89 38773335
    796986 8src:B (2.92) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796987 8src:B (2.92) BS02 APR ? GO:0005216 ... F2UB89 38773335
    796988 8src:B (2.92) BS03 CA ? GO:0005216 ... F2UB89 38773335
    796989 8src:B (2.92) BS04 CA ? GO:0005216 ... F2UB89 38773335
    796990 8src:B (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    796991 8src:B (2.92) BS06 CA ? GO:0005216 ... F2UB89 38773335
    796992 8src:B (2.92) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    796993 8src:B (2.92) BS08 APR ? GO:0005216 ... F2UB89 38773335
    796994 8src:B (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    796995 8src:B (2.92) BS10 CLR ? GO:0005216 ... F2UB89 38773335
    796996 8src:C (2.92) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    796997 8src:C (2.92) BS02 APR ? GO:0005216 ... F2UB89 38773335
    796998 8src:C (2.92) BS03 CA ? GO:0005216 ... F2UB89 38773335
    796999 8src:C (2.92) BS04 CA ? GO:0005216 ... F2UB89 38773335
    797000 8src:C (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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