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BioLiP

PDB CCD ID: RP5
Number of entries in BioLiP: 41
Chemical formula: C5 H11 O8 P
InChI: InChI=1S/C5H11O8P/c6-3-2(1-12-14(9,10)11)13-5(8)4(3)7/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4-,5-/m1/s1
InChIKey: KTVPXOYAKDPRHY-TXICZTDVSA-N
SMILES:
SoftwareSMILES
CACTVS 3.370O[CH]1O[CH](CO[P](O)(O)=O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.0C([C@@H]1[C@H]([C@H]([C@@H](O1)O)O)O)OP(=O)(O)O
OpenEye OEToolkits 1.7.0C(C1C(C(C(O1)O)O)O)OP(=O)(O)O
CACTVS 3.370O[C@@H]1O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]1O
ACDLabs 12.01O=P(O)(O)OCC1OC(O)C(O)C1O
Name:5-O-phosphono-beta-D-ribofuranose;
[(2R,3S,4S,5R)-3,4,5-TRIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN PHOSPHATE;
5-O-phosphono-beta-D-ribose;
5-O-phosphono-D-ribose;
5-O-phosphono-ribose
ChEMBL: CHEMBL1235722
DrugBank: DB04352
ZINC: ZINC000004228241
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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