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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    832401 9gac:A (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    832402 9gac:C (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    832403 9gaf:A (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    832404 9gaf:C (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    832405 9gpb:A (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    832406 9gpb:B (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    832407 9gpb:C (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    832408 9gpb:D (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    832409 9gss:A (1.97) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 9398518
    832410 9gss:B (1.97) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 9398518
    832411 9hvp:A (2.8) BS01 0E9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12497 2200122 PDBbind: -logKd/Ki=8.35, Ki=4.5nM
    832412 9hvp:B (2.8) BS01 0E9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12497 2200122 PDBbind: -logKd/Ki=8.35, Ki=4.5nM
    832413 9ica:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832414 9ica:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832415 9ica:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832416 9ica:A (3.0) BS04 STP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832417 9icb:A (3.2) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832418 9icb:A (3.2) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832419 9icb:A (3.2) BS03 CO 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832420 9icb:A (3.2) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832421 9icc:A (3.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832422 9icc:A (3.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832423 9icc:A (3.1) BS03 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832424 9icd:A (2.5) BS01 NAP 1.1.1.42 GO:0000287 ... P08200 1888729 MOAD: Kd=125uM
    PDBbind: -logKd/Ki=3.90, Kd=125uM
    832425 9ice:A (3.3) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832426 9ice:A (3.3) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832427 9icf:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832428 9icf:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832429 9icf:A (3.0) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832430 9icf:A (3.0) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832431 9icg:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832432 9icg:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832433 9icg:A (3.0) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832434 9icg:A (3.0) BS04 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832435 9ich:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832436 9ich:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832437 9ich:A (2.9) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832438 9ich:A (2.9) BS04 DGT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832439 9ici:A (3.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832440 9ici:A (3.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832441 9ici:A (3.1) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832442 9icj:A (3.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832443 9icj:A (3.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832444 9ick:A (2.7) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832445 9ick:A (2.7) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832446 9icl:A (2.8) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832447 9icl:A (2.8) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832448 9icl:A (2.8) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832449 9icl:A (2.8) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    832450 9icm:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    832451 9icm:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    832452 9icn:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832453 9icn:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832454 9icn:A (3.0) BS03 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832455 9ico:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832456 9ico:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832457 9icp:A (3.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832458 9icp:A (3.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832459 9icq:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832460 9icq:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832461 9icq:A (2.9) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832462 9icq:A (2.9) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832463 9icr:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832464 9icr:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832465 9icr:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832466 9icr:A (3.0) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832467 9icr:A (3.0) BS05 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832468 9ics:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832469 9ics:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832470 9ics:A (2.9) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832471 9ics:A (2.9) BS04 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832472 9ict:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832473 9ict:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832474 9ict:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832475 9ict:A (3.0) BS04 DGT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832476 9icu:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832477 9icu:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832478 9icu:A (2.9) BS03 TTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119 BindingDB: IC50=1400nM
    832479 9icv:A (2.7) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832480 9icv:A (2.7) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832481 9icv:A (2.7) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832482 9icv:A (2.7) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    832483 9icw:A (2.6) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    832484 9icw:A (2.6) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    832485 9icx:A (2.6) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    832486 9icx:A (2.6) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    832487 9icy:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    832488 9icy:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    832489 9ins:B (1.7) BS01 peptide ? GO:0005179 ... P01315 1504238
    832490 9jdw:A (2.5) BS01 ABA 2.1.4.1 GO:0005515 ... P50440 9915841
    832491 9ldb:A (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    832492 9ldb:B (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    832493 9ldt:A (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    832494 9ldt:B (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    832495 9lpr:A (2.2) BS01 peptide 3.4.21.12 GO:0004252 ... P00778 1931963
    832496 9lyz:A (2.5) BS01 AMU 3.2.1.17 GO:0003796 ... P00698 514367
    832497 9mht:A (2.39) BS01 dna 2.1.1.37 GO:0003677 ... P05102 9783745
    832498 9mht:A (2.39) BS02 dna 2.1.1.37 GO:0003677 ... P05102 9783745
    832499 9mht:A (2.39) BS03 SAH 2.1.1.37 GO:0003677 ... P05102 9783745
    832500 9nse:A (2.24) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11051558
    832501 9nse:A (2.24) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    832502 9nse:A (2.24) BS03 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    832503 9nse:A (2.24) BS04 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    832504 9nse:A (2.24) BS05 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    832505 9nse:B (2.24) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11051558
    832506 9nse:B (2.24) BS02 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    832507 9nse:B (2.24) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    832508 9nse:B (2.24) BS04 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    832509 9nse:B (2.24) BS05 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    832510 9nse:B (2.24) BS06 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    832511 9pcy:A (-1.00) BS01 CU ? GO:0005507 ... P00287 1920431
    832512 9rsa:B (1.8) BS01 ADU 4.6.1.18 GO:0003676 ... P61823 2340284
    832513 9rub:A (2.6) BS01 RUB 4.1.1.39 GO:0000287 ... P04718 1905726
    832514 9rub:B (2.6) BS01 RUB 4.1.1.39 GO:0000287 ... P04718 1905726
    832515 9rub:B (2.6) BS02 MG 4.1.1.39 GO:0000287 ... P04718 1905726
    832516 9xia:A (1.9) BS01 DFR 5.3.1.5 GO:0000287 ... P24300 2734296
    832517 9xia:A (1.9) BS02 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    832518 9xia:A (1.9) BS03 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    832519 9xim:A (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    832520 9xim:A (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    832521 9xim:A (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    832522 9xim:B (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    832523 9xim:B (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    832524 9xim:B (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    832525 9xim:C (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    832526 9xim:C (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    832527 9xim:C (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    832528 9xim:D (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    832529 9xim:D (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    832530 9xim:D (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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