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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    827601 8wdv:W (2.24) BS07 CRT ? GO:0005886 ... D3RP74 38347078
    827602 8wdv:X (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    827603 8wdv:X (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    827604 8wdv:X (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    827605 8wdv:Y (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    827606 8wdv:Y (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    827607 8wdv:Y (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    827608 8wdv:Y (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    827609 8wdv:Y (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    827610 8wdv:Y (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    827611 8wdv:Z (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    827612 8wdv:Z (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    827613 8wdv:Z (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    827614 8wdv:Z (2.24) BS04 BCL ? GO:0005886 ... D3RP68 38347078
    827615 8wdx:A (1.65) BS01 W6K ? GO:0005324 ... P15090 38043490
    827616 8we3:A (1.82) BS01 W6B ? GO:0005324 ... P15090 38043490
    827617 8we6:A (2.9) BS01 CA ? GO:0002520 ... Q13936 37972591
    827618 8we6:A (2.9) BS02 CLR ? GO:0002520 ... Q13936 37972591
    827619 8we6:A (2.9) BS03 CLR ? GO:0002520 ... Q13936 37972591
    827620 8we6:A (2.9) BS04 CLR ? GO:0002520 ... Q13936 37972591
    827621 8we6:A (2.9) BS05 CLR ? GO:0002520 ... Q13936 37972591
    827622 8we6:A (2.9) BS06 PT5 ? GO:0002520 ... Q13936 37972591
    827623 8we6:D (2.9) BS01 CA ? N/A P54289 37972591
    827624 8we7:A (3.2) BS01 CA ? GO:0002520 ... Q13936 37972591
    827625 8we7:A (3.2) BS02 CLR ? GO:0002520 ... Q13936 37972591
    827626 8we7:A (3.2) BS03 CLR ? GO:0002520 ... Q13936 37972591
    827627 8we7:D (3.2) BS01 CA ? N/A P54289 37972591
    827628 8we8:A (2.9) BS01 CA ? GO:0002520 ... Q13936 37972591
    827629 8we8:A (2.9) BS02 CLR ? GO:0002520 ... Q13936 37972591
    827630 8we8:A (2.9) BS03 CLR ? GO:0002520 ... Q13936 37972591
    827631 8we8:A (2.9) BS04 CLR ? GO:0002520 ... Q13936 37972591
    827632 8we8:A (2.9) BS05 CLR ? GO:0002520 ... Q13936 37972591
    827633 8we8:A (2.9) BS06 PT5 ? GO:0002520 ... Q13936 37972591
    827634 8we8:A (2.9) BS07 6UB ? GO:0002520 ... Q13936 37972591
    827635 8we8:A (2.9) BS08 CLR ? GO:0002520 ... Q13936 37972591
    827636 8we8:B (2.9) BS01 CLR ? GO:0005246 ... P22947 37972591
    827637 8we8:D (2.9) BS01 CA ? N/A P54289 37972591
    827638 8we9:A (3.0) BS01 CA ? GO:0002520 ... Q13936 37972591
    827639 8we9:A (3.0) BS02 CLR ? GO:0002520 ... Q13936 37972591
    827640 8we9:A (3.0) BS03 CLR ? GO:0002520 ... Q13936 37972591
    827641 8we9:A (3.0) BS04 CLR ? GO:0002520 ... Q13936 37972591
    827642 8we9:A (3.0) BS05 PT5 ? GO:0002520 ... Q13936 37972591
    827643 8we9:D (3.0) BS01 CA ? N/A P54289 37972591
    827644 8wea:A (3.2) BS01 9Z9 ? GO:0002520 ... Q13936 37972591
    827645 8wea:A (3.2) BS02 WB9 ? GO:0002520 ... Q13936 37972591
    827646 8wea:D (3.2) BS01 CA ? N/A P54289 37972591
    827647 8wej:B (2.79) BS01 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    827648 8wej:B (2.79) BS02 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    827649 8wej:B (2.79) BS03 NDP 1.-.-.- GO:0005515 ... P04839 38355798
    827650 8wej:B (2.79) BS04 FDA 1.-.-.- GO:0005515 ... P04839 38355798
    827651 8wej:E (2.79) BS01 peptide 3.6.5.2 GO:0001764 ... P63000 38355798
    827652 8wej:E (2.79) BS02 GTP 3.6.5.2 GO:0001764 ... P63000 38355798
    827653 8wej:E (2.79) BS03 MG 3.6.5.2 GO:0001764 ... P63000 38355798
    827654 8wex:A (2.33) BS01 ZN ? GO:0016740 ... A0A3A6V1D8 37895170
    827655 8wex:B (2.33) BS01 ZN ? GO:0016740 ... A0A3A6V1D8 37895170
    827656 8wf5:A (1.72) BS01 WC5 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 38780472
    827657 8wfi:A (2.58) BS01 GLY ? GO:0005283 ... P48067 38513663
    827658 8wfj:A (3.35) BS01 W5F ? GO:0005283 ... P48067 38513663
    827659 8wfk:A (3.22) BS01 W5O ? GO:0005283 ... P48067 38513663
    827660 8wfl:A (3.03) BS01 W5X ? GO:0005283 ... P48067 38513663
    827661 8wfq:A (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    827662 8wfq:B (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    827663 8wfq:C (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    827664 8wfq:D (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    827665 8wfq:E (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    827666 8wfq:F (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    827667 8wfq:G (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    827668 8wfq:H (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    827669 8wfy:A (2.6) BS01 5OD 3.1.3.48 GO:0004725 ... Q06124 N/A
    827670 8wfy:B (2.6) BS01 5OD 3.1.3.48 GO:0004725 ... Q06124 N/A
    827671 8wg0:A (1.95) BS01 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827672 8wg0:A (1.95) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827673 8wg0:B (1.95) BS01 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827674 8wg0:B (1.95) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827675 8wg0:C (1.95) BS01 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827676 8wg0:C (1.95) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827677 8wg0:C (1.95) BS03 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827678 8wg0:D (1.95) BS01 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827679 8wg0:D (1.95) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827680 8wg1:A (2.34) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827681 8wg1:A (2.34) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827682 8wg1:A (2.34) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827683 8wg1:B (2.34) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827684 8wg1:B (2.34) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827685 8wg1:B (2.34) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827686 8wg1:C (2.34) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827687 8wg1:C (2.34) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827688 8wg1:C (2.34) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827689 8wg1:D (2.34) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827690 8wg1:D (2.34) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827691 8wg1:D (2.34) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827692 8wg2:A (2.45) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827693 8wg2:A (2.45) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827694 8wg2:A (2.45) BS03 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827695 8wg2:A (2.45) BS04 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827696 8wg2:B (2.45) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827697 8wg2:B (2.45) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827698 8wg2:B (2.45) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827699 8wg2:C (2.45) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827700 8wg2:C (2.45) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827701 8wg2:C (2.45) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827702 8wg2:D (2.45) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827703 8wg2:D (2.45) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827704 8wg2:D (2.45) BS03 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827705 8wg2:D (2.45) BS04 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    827706 8wg5:A (3.05) BS01 dna ? GO:0000786 ... P68431 38918638
    827707 8wg5:A (3.05) BS02 dna ? GO:0000786 ... P68431 38918638
    827708 8wg5:B (3.05) BS01 dna ? GO:0003677 ... P62805 38918638
    827709 8wg5:B (3.05) BS02 dna ? GO:0003677 ... P62805 38918638
    827710 8wg5:C (3.05) BS01 dna ? GO:0000786 ... P04908 38918638
    827711 8wg5:C (3.05) BS02 dna ? GO:0000786 ... P04908 38918638
    827712 8wg5:D (3.05) BS01 dna ? GO:0000786 ... O60814 38918638
    827713 8wg5:D (3.05) BS02 dna ? GO:0000786 ... O60814 38918638
    827714 8wg5:E (3.05) BS01 dna ? GO:0000786 ... P68431 38918638
    827715 8wg5:E (3.05) BS02 dna ? GO:0000786 ... P68431 38918638
    827716 8wg5:F (3.05) BS01 dna ? GO:0003677 ... P62805 38918638
    827717 8wg5:F (3.05) BS02 dna ? GO:0003677 ... P62805 38918638
    827718 8wg5:G (3.05) BS01 dna ? GO:0000786 ... P04908 38918638
    827719 8wg5:G (3.05) BS02 dna ? GO:0000786 ... P04908 38918638
    827720 8wg5:H (3.05) BS01 dna ? GO:0000786 ... O60814 38918638
    827721 8wg5:H (3.05) BS02 dna ? GO:0000786 ... O60814 38918638
    827722 8wg8:R (2.71) BS01 peptide ? GO:0004888 ... P47871 38346960
    827723 8wgf:A (1.85) BS01 ANP 2.7.11.24 GO:0004672 ... P53779 N/A
    827724 8wgs:A (1.801) BS01 WGH ? N/A P02766 38670538
    827725 8wgs:B (1.801) BS01 WGH ? N/A P02766 38670538
    827726 8wgt:A (1.696) BS01 WGJ ? N/A P02766 38670538
    827727 8wgt:B (1.696) BS01 WGJ ? N/A P02766 38670538
    827728 8wgu:A (1.508) BS01 WH0 ? N/A P02766 38670538
    827729 8wgu:B (1.508) BS01 WH0 ? N/A P02766 38670538
    827730 8wh5:A (3.58) BS01 dna ? GO:0000786 ... P59226 38413824
    827731 8wh5:A (3.58) BS02 dna ? GO:0000786 ... P59226 38413824
    827732 8wh5:B (3.58) BS01 dna ? GO:0000325 ... P59259 38413824
    827733 8wh5:B (3.58) BS02 dna ? GO:0000325 ... P59259 38413824
    827734 8wh5:C (3.58) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    827735 8wh5:C (3.58) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    827736 8wh5:D (3.58) BS01 dna ? GO:0000786 ... O23629 38413824
    827737 8wh5:E (3.58) BS01 dna ? GO:0000786 ... P59226 38413824
    827738 8wh5:F (3.58) BS01 dna ? GO:0000325 ... P59259 38413824
    827739 8wh5:F (3.58) BS02 dna ? GO:0000325 ... P59259 38413824
    827740 8wh5:G (3.58) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    827741 8wh5:G (3.58) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    827742 8wh5:H (3.58) BS01 dna ? GO:0000786 ... O23629 38413824
    827743 8wh5:K (3.58) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    827744 8wh5:K (3.58) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    827745 8wh8:A (3.6) BS01 dna ? GO:0000786 ... P59226 38413824
    827746 8wh8:A (3.6) BS02 dna ? GO:0000786 ... P59226 38413824
    827747 8wh8:B (3.6) BS01 dna ? GO:0000325 ... P59259 38413824
    827748 8wh8:B (3.6) BS02 dna ? GO:0000325 ... P59259 38413824
    827749 8wh8:C (3.6) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    827750 8wh8:C (3.6) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    827751 8wh8:D (3.6) BS01 dna ? GO:0000786 ... O23629 38413824
    827752 8wh8:D (3.6) BS02 dna ? GO:0000786 ... O23629 38413824
    827753 8wh8:E (3.6) BS01 dna ? GO:0000786 ... P59226 38413824
    827754 8wh8:F (3.6) BS01 dna ? GO:0000325 ... P59259 38413824
    827755 8wh8:F (3.6) BS02 dna ? GO:0000325 ... P59259 38413824
    827756 8wh8:G (3.6) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    827757 8wh8:G (3.6) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    827758 8wh8:H (3.6) BS01 dna ? GO:0000786 ... O23629 38413824
    827759 8wh8:K (3.6) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    827760 8wh8:K (3.6) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    827761 8wh8:K (3.6) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    827762 8wh9:A (3.31) BS01 dna ? GO:0000786 ... P59226 38413824
    827763 8wh9:A (3.31) BS02 dna ? GO:0000786 ... P59226 38413824
    827764 8wh9:B (3.31) BS01 dna ? GO:0000325 ... P59259 38413824
    827765 8wh9:B (3.31) BS02 dna ? GO:0000325 ... P59259 38413824
    827766 8wh9:C (3.31) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    827767 8wh9:C (3.31) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    827768 8wh9:D (3.31) BS01 dna ? GO:0000786 ... O23629 38413824
    827769 8wh9:D (3.31) BS02 dna ? GO:0000786 ... O23629 38413824
    827770 8wh9:E (3.31) BS01 dna ? GO:0000786 ... P59226 38413824
    827771 8wh9:E (3.31) BS02 dna ? GO:0000786 ... P59226 38413824
    827772 8wh9:F (3.31) BS01 dna ? GO:0000325 ... P59259 38413824
    827773 8wh9:G (3.31) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    827774 8wh9:G (3.31) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    827775 8wh9:H (3.31) BS01 dna ? GO:0000786 ... O23629 38413824
    827776 8wh9:H (3.31) BS02 dna ? GO:0000786 ... O23629 38413824
    827777 8wh9:K (3.31) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    827778 8wh9:K (3.31) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    827779 8wh9:K (3.31) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    827780 8wha:A (4.05) BS01 dna ? GO:0000786 ... P59226 38413824
    827781 8wha:A (4.05) BS02 dna ? GO:0000786 ... P59226 38413824
    827782 8wha:B (4.05) BS01 dna ? GO:0000325 ... P59259 38413824
    827783 8wha:B (4.05) BS02 dna ? GO:0000325 ... P59259 38413824
    827784 8wha:C (4.05) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    827785 8wha:C (4.05) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    827786 8wha:D (4.05) BS01 dna ? GO:0000786 ... O23629 38413824
    827787 8wha:D (4.05) BS02 dna ? GO:0000786 ... O23629 38413824
    827788 8wha:E (4.05) BS01 dna ? GO:0000786 ... P59226 38413824
    827789 8wha:E (4.05) BS02 dna ? GO:0000786 ... P59226 38413824
    827790 8wha:F (4.05) BS01 dna ? GO:0000325 ... P59259 38413824
    827791 8wha:G (4.05) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    827792 8wha:G (4.05) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    827793 8wha:H (4.05) BS01 dna ? GO:0000786 ... O23629 38413824
    827794 8wha:H (4.05) BS02 dna ? GO:0000786 ... O23629 38413824
    827795 8wha:K (4.05) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    827796 8wha:K (4.05) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    827797 8wha:K (4.05) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    827798 8wha:L (4.05) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    827799 8wha:L (4.05) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    827800 8wha:L (4.05) BS03 BEF 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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