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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1801 1aql:A (2.8) BS01 TCH 3.1.1.13
    3.1.1.3
    3.1.1.6    		 GO:0004771 ... P30122 9331420
    1802 1aql:A (2.8) BS02 TCH 3.1.1.13
    3.1.1.3
    3.1.1.6    		 GO:0004771 ... P30122 9331420
    1803 1aql:B (2.8) BS01 TCH 3.1.1.13
    3.1.1.3
    3.1.1.6    		 GO:0004771 ... P30122 9331420
    1804 1aql:B (2.8) BS02 TCH 3.1.1.13
    3.1.1.3
    3.1.1.6    		 GO:0004771 ... P30122 9331420
    1805 1aqm:A (1.85) BS01 CA 3.2.1.1 GO:0003824 ... P29957 9541387
    1806 1aqm:A (1.85) BS02 CL 3.2.1.1 GO:0003824 ... P29957 9541387
    1807 1aqn:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 N/A
    1808 1aqn:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 N/A
    1809 1aqp:A (2.0) BS01 CU 4.6.1.18 GO:0003676 ... P61823 9275172
    1810 1aqp:A (2.0) BS02 CU 4.6.1.18 GO:0003676 ... P61823 9275172
    1811 1aqu:A (1.6) BS01 A3P 2.8.2.4 GO:0004304 ... P49891 9360604
    1812 1aqu:A (1.6) BS02 EST 2.8.2.4 GO:0004304 ... P49891 9360604
    1813 1aqu:B (1.6) BS01 A3P 2.8.2.4 GO:0004304 ... P49891 9360604
    1814 1aqu:B (1.6) BS02 EST 2.8.2.4 GO:0004304 ... P49891 9360604
    1815 1aqv:A (1.94) BS01 0HG 2.5.1.18 GO:0000302 ... P09211 9351803
    1816 1aqv:B (1.94) BS01 0HG 2.5.1.18 GO:0000302 ... P09211 9351803
    1817 1aqw:A (1.8) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9351803
    1818 1aqw:B (1.8) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9351803
    1819 1aqw:C (1.8) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9351803
    1820 1aqw:D (1.8) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9351803
    1821 1aqx:A (2.0) BS01 GTD 2.5.1.18 GO:0000302 ... P09211 9351803
    1822 1aqx:B (2.0) BS01 GTD 2.5.1.18 GO:0000302 ... P09211 9351803
    1823 1aqx:C (2.0) BS01 GTD 2.5.1.18 GO:0000302 ... P09211 9351803
    1824 1aqx:D (2.0) BS01 GTD 2.5.1.18 GO:0000302 ... P09211 9351803
    1825 1aqy:A (1.75) BS01 A3P 2.8.2.4 GO:0004304 ... P49891 9360604
    1826 1aqy:B (1.75) BS01 A3P 2.8.2.4 GO:0004304 ... P49891 9360604
    1827 1ar1:A (2.7) BS01 CU 7.1.1.9 GO:0004129 ... P98002 9380672
    1828 1ar1:A (2.7) BS02 MG 7.1.1.9 GO:0004129 ... P98002 9380672
    1829 1ar1:A (2.7) BS03 CA 7.1.1.9 GO:0004129 ... P98002 9380672
    1830 1ar1:A (2.7) BS04 HEA 7.1.1.9 GO:0004129 ... P98002 9380672
    1831 1ar1:A (2.7) BS05 HEA 7.1.1.9 GO:0004129 ... P98002 9380672
    1832 1ar1:B (2.7) BS01 CU 7.1.1.9 GO:0004129 ... P08306 9380672
    1833 1ar1:B (2.7) BS02 CU 7.1.1.9 GO:0004129 ... P08306 9380672
    1834 1ar4:A (1.9) BS01 MN 1.15.1.1 GO:0004784 ... P80293 N/A
    1835 1ar4:B (1.9) BS01 MN 1.15.1.1 GO:0004784 ... P80293 N/A
    1836 1ar5:A (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    1837 1ar5:B (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    1838 1ar6:4 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0005198 ... P03300 9253417
    1839 1ar7:4 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0005198 ... P03300 9253417
    1840 1ar8:4 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0005198 ... P03300 9253417
    1841 1ar9:4 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0005198 ... P03300 9253417
    1842 1arc:A (2.0) BS01 TCK 3.4.21.50 GO:0004252 ... P15636 2492988
    1843 1arg:A (2.2) BS01 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1844 1arg:A (2.2) BS02 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1845 1arg:B (2.2) BS01 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1846 1arg:B (2.2) BS02 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1847 1arh:A (2.3) BS01 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1848 1arh:A (2.3) BS02 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1849 1arh:B (2.3) BS01 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1850 1arh:B (2.3) BS02 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1851 1ari:A (2.3) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7851426
    1852 1ari:B (2.3) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7851426
    1853 1arm:A (1.76) BS01 HG 3.4.17.1 GO:0004181 ... P00730 9867434
    1854 1arm:A (1.76) BS02 HG 3.4.17.1 GO:0004181 ... P00730 9867434
    1855 1arp:A (1.9) BS01 CA 1.11.1.7 GO:0000302 ... P28313 8289254
    1856 1arp:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 8289254
    1857 1arp:A (1.9) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 8289254
    1858 1ars:A (1.8) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7798192
    1859 1art:A (1.8) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7798192
    1860 1art:A (1.8) BS02 0A0 2.6.1.1 GO:0003824 ... P00509 7798192
    1861 1aru:A (1.6) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1862 1aru:A (1.6) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1863 1aru:A (1.6) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    1864 1arv:A (1.6) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1865 1arv:A (1.6) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1866 1arv:A (1.6) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    1867 1arw:A (1.6) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1868 1arw:A (1.6) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1869 1arw:A (1.6) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    1870 1arx:A (1.9) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1871 1arx:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1872 1arx:A (1.9) BS03 IOD 1.11.1.7 GO:0000302 ... P28313 7665612
    1873 1arx:A (1.9) BS04 IOD 1.11.1.7 GO:0000302 ... P28313 7665612
    1874 1arx:A (1.9) BS05 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    1875 1ary:A (1.9) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1876 1ary:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1877 1ary:A (1.9) BS03 IOD 1.11.1.7 GO:0000302 ... P28313 7665612
    1878 1ary:A (1.9) BS04 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    1879 1arz:A (2.6) BS01 PO4 1.17.1.8 GO:0005737 ... P04036 9398235
    1880 1arz:B (2.6) BS01 NAI 1.17.1.8 GO:0005737 ... P04036 9398235
    1881 1arz:B (2.6) BS02 PDC 1.17.1.8 GO:0005737 ... P04036 9398235
    1882 1arz:C (2.6) BS01 NAI 1.17.1.8 GO:0005737 ... P04036 9398235
    1883 1arz:C (2.6) BS02 PDC 1.17.1.8 GO:0005737 ... P04036 9398235
    1884 1arz:D (2.6) BS01 NAI 1.17.1.8 GO:0005737 ... P04036 9398235
    1885 1arz:D (2.6) BS02 PDC 1.17.1.8 GO:0005737 ... P04036 9398235
    1886 1as0:A (2.0) BS01 MG ? GO:0000287 ... P10824 9398294
    1887 1as0:A (2.0) BS02 GSP ? GO:0000287 ... P10824 9398294
    1888 1as2:A (2.8) BS01 GDP ? GO:0000287 ... P10824 9398294
    1889 1as3:A (2.4) BS01 GDP ? GO:0000287 ... P10824 9398294
    1890 1as4:B (2.1) BS01 ACT ? N/A P01011 9521649
    1891 1as6:A (1.8) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1892 1as6:A (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1893 1as6:A (1.8) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1894 1as6:B (1.8) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1895 1as6:B (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1896 1as6:B (1.8) BS03 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1897 1as6:B (1.8) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1898 1as6:C (1.8) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1899 1as6:C (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1900 1as6:C (1.8) BS03 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1901 1as6:C (1.8) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1902 1as7:A (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1903 1as7:A (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1904 1as7:B (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1905 1as7:B (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1906 1as7:C (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1907 1as7:C (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1908 1as8:A (1.85) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1909 1as8:A (1.85) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1910 1as8:A (1.85) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1911 1as8:A (1.85) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1912 1as8:B (1.85) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1913 1as8:B (1.85) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1914 1as8:B (1.85) BS03 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1915 1as8:C (1.85) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1916 1as8:C (1.85) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1917 1as8:C (1.85) BS03 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1918 1as8:C (1.85) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1919 1asa:A (2.4) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 N/A
    1920 1asb:A (2.6) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 N/A
    1921 1asc:A (2.4) BS01 NPL 2.6.1.1 GO:0003824 ... P00509 N/A
    1922 1asd:A (2.2) BS01 MPL 2.6.1.1 GO:0003824 ... P00509 N/A
    1923 1ase:A (2.5) BS01 NOP 2.6.1.1 GO:0003824 ... P00509 N/A
    1924 1asf:A (2.8) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 N/A
    1925 1asg:A (2.8) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 N/A
    1926 1ash:A (2.15) BS01 HEM ? GO:0005506 ... P28316 7753786
    1927 1asj:4 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0005198 ... P03300 9253417
    1928 1asl:A (2.6) BS01 PLA 2.6.1.1 GO:0003824 ... P00509 8196059
    1929 1asl:A (2.6) BS02 PLA 2.6.1.1 GO:0003824 ... P00509 8196059
    1930 1asl:B (2.6) BS01 PLA 2.6.1.1 GO:0003824 ... P00509 8196059
    1931 1asl:B (2.6) BS02 PLA 2.6.1.1 GO:0003824 ... P00509 8196059
    1932 1asm:A (2.35) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 8196059
    1933 1asm:B (2.35) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 8196059
    1934 1asn:A (2.5) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 8196059
    1935 1asn:B (2.5) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 8196059
    1936 1aso:A (2.2) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1937 1aso:A (2.2) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1938 1aso:A (2.2) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1939 1aso:A (2.2) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1940 1aso:B (2.2) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1941 1aso:B (2.2) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1942 1aso:B (2.2) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1943 1aso:B (2.2) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1944 1asp:A (2.59) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1945 1asp:A (2.59) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1946 1asp:A (2.59) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1947 1asp:A (2.59) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1948 1asp:B (2.59) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1949 1asp:B (2.59) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1950 1asp:B (2.59) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1951 1asp:B (2.59) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1952 1asq:A (2.32) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1953 1asq:A (2.32) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1954 1asq:A (2.32) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1955 1asq:A (2.32) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1956 1asq:A (2.32) BS05 AZI 1.10.3.3 GO:0005507 ... P37064 8478945
    1957 1asq:A (2.32) BS06 AZI 1.10.3.3 GO:0005507 ... P37064 8478945
    1958 1asq:B (2.32) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1959 1asq:B (2.32) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1960 1asq:B (2.32) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1961 1asq:B (2.32) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1962 1asq:B (2.32) BS05 AZI 1.10.3.3 GO:0005507 ... P37064 8478945
    1963 1asq:B (2.32) BS06 AZI 1.10.3.3 GO:0005507 ... P37064 8478945
    1964 1ast:A (1.8) BS01 ZN 3.4.24.21 GO:0004222 ... P07584 1319561
    1965 1asy:A (2.9) BS01 rna 6.1.1.12 GO:0000166 ... P04802 2047877
    1966 1asy:B (2.9) BS01 rna 6.1.1.12 GO:0000166 ... P04802 2047877
    1967 1asz:A (3.0) BS01 rna 6.1.1.12 GO:0000166 ... P04802 8313877
    1968 1asz:A (3.0) BS02 ATP 6.1.1.12 GO:0000166 ... P04802 8313877
    1969 1asz:B (3.0) BS01 rna 6.1.1.12 GO:0000166 ... P04802 8313877
    1970 1asz:B (3.0) BS02 ATP 6.1.1.12 GO:0000166 ... P04802 8313877
    1971 1at1:A (2.8) BS01 MLI 2.1.3.2 GO:0004070 ... P0A786 2405902
    1972 1at1:A (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2405902
    1973 1at1:B (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 2405902
    1974 1at1:C (2.8) BS01 MLI 2.1.3.2 GO:0004070 ... P0A786 2405902
    1975 1at1:C (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2405902
    1976 1at1:D (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 2405902
    1977 1at3:A (2.5) BS01 DFP 3.4.21.97 GO:0004252 ... Q69527 9369473
    1978 1at3:B (2.5) BS01 DFP 3.4.21.97 GO:0004252 ... Q69527 9369473
    1979 1at9:A (2.8) BS01 RET ? GO:0005216 ... P02945 9296502
    1980 1atg:A (1.2) BS01 WO4 ? GO:0015689 ... Q7SIH2 9862806
    1981 1ati:B (2.75) BS01 peptide 6.1.1.14 GO:0000166 ... P56206 7556056
    1982 1atj:A (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1983 1atj:A (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1984 1atj:A (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    1985 1atj:B (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1986 1atj:B (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1987 1atj:B (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    1988 1atj:C (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1989 1atj:C (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1990 1atj:C (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    1991 1atj:D (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1992 1atj:D (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1993 1atj:D (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    1994 1atj:E (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1995 1atj:E (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1996 1atj:E (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    1997 1atj:F (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1998 1atj:F (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1999 1atj:F (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    2000 1atk:A (2.2) BS01 E64 3.4.22.38 GO:0006508 ... P43235 9033588
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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