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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5601 2qwc:A (1.6) BS02 DAN 3.2.1.18 GO:0004308 ... P03472 9655825 MOAD: Ki=280uM
    PDBbind: -logKd/Ki=3.55, Ki=280uM
    BindingDB: IC50=13000nM
    5602 2qwd:A (2.0) BS02 4AM 3.2.1.18 GO:0004308 ... P03472 9655825 MOAD: Ki=14uM
    PDBbind: -logKd/Ki=4.85, Ki=14uM
    5603 2qwf:A (1.9) BS02 G20 3.2.1.18 GO:0004308 ... P03472 9655825 MOAD: Ki=2.16uM
    PDBbind: -logKd/Ki=5.67, Ki=2.160uM
    5604 2qwg:A (1.8) BS02 G28 3.2.1.18 GO:0004308 ... P03472 9655825 MOAD: ic50=230uM
    PDBbind: -logKd/Ki=3.64, IC50=230uM
    5605 2qx0:A (1.8) BS04 PH2 2.7.6.3 GO:0003848 ... A0A5P8YCA3 18007032 MOAD: Kd=0.78uM
    PDBbind: -logKd/Ki=6.11, Kd=0.78uM
    5606 2qx0:B (1.8) BS04 PH2 2.7.6.3 GO:0003848 ... A0A5P8YCA3 18007032 MOAD: Kd=0.78uM
    PDBbind: -logKd/Ki=6.11, Kd=0.78uM
    5607 2qyk:A (2.1) BS01 NPV 3.1.4.53 GO:0004114 ... P27815 17727341 MOAD: ic50=3.3uM
    PDBbind: -logKd/Ki=5.48, IC50=3.3uM
    BindingDB: IC50=3300nM, EC50=20nM
    5608 2qyl:A (1.95) BS03 NPV 3.1.4.53 GO:0004114 ... Q07343 17727341 MOAD: ic50=0.65uM
    PDBbind: -logKd/Ki=6.19, IC50=0.65uM
    BindingDB: IC50=650nM
    5609 2qyn:A (1.57) BS01 NPV 3.1.4.53 GO:0004114 ... Q08499 17727341 MOAD: ic50=0.57uM
    PDBbind: -logKd/Ki=6.24, IC50=0.57uM
    BindingDB: IC50=1nM
    5610 2qzk:A (1.8) BS01 I21 3.4.23.46 GO:0004190 ... P56817 17827011 MOAD: ic50=27nM
    PDBbind: -logKd/Ki=7.57, IC50=27nM
    5611 2qzl:A (1.8) BS01 IXS 3.4.23.46 GO:0004190 ... P56817 16690314 MOAD: ic50=8nM
    PDBbind: -logKd/Ki=8.10, IC50=8nM
    BindingDB: IC50=8nM
    5612 2qzr:A (1.95) BS02 S79 2.4.2.29 GO:0002099 ... P28720 17902085 MOAD: Ki=55nM
    PDBbind: -logKd/Ki=7.26, Ki=55nM
    5613 2r0u:A (1.9) BS01 M54 2.7.11.1 GO:0000077 ... O14757 17900896 MOAD: ic50=1nM
    PDBbind: -logKd/Ki=9.00, IC50=1.0nM
    BindingDB: IC50=1nM
    5614 2r1x:A (1.6) BS01 KDA ? GO:0046872 ... Q52L64 18272175 PDBbind: -logKd/Ki=4.80, Kd=16uM
    5615 2r1x:B (1.6) BS01 KDA ? GO:0002250 ... A2NU21 18272175 PDBbind: -logKd/Ki=4.80, Kd=16uM
    5616 2r1y:A (1.6) BS01 KDO ? GO:0046872 ... Q52L64 18272175 PDBbind: -logKd/Ki=4.51, Kd=31uM
    5617 2r1y:B (1.6) BS02 KDO ? GO:0002250 ... A2NU21 18272175 PDBbind: -logKd/Ki=4.51, Kd=31uM
    5618 2r2l:B (2.23) BS03 PB9 2.5.1.58 GO:0003824 ... Q02293 17606674 MOAD: ic50=0.58nM
    PDBbind: -logKd/Ki=9.00, IC50=1nM
    5619 2r2m:B (2.1) BS03 I50 3.4.21.5 GO:0004252 ... P00734 17889527 MOAD: Ki=47.1nM
    PDBbind: -logKd/Ki=7.33, Ki=47.1nM
    5620 2r2w:U (2.01) BS01 4PG 3.4.21.73 GO:0004252 ... P00749 17905583 MOAD: Ki=34uM
    PDBbind: -logKd/Ki=4.47, Ki=34uM
    5621 2r38:A (1.81) BS01 G4G 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18692068 PDBbind: -logKd/Ki=7.44, Ki=0.036uM
    5622 2r38:B (1.81) BS01 G4G 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18692068 MOAD: Ki=0.036uM
    PDBbind: -logKd/Ki=7.44, Ki=0.036uM
    5623 2r3f:A (1.5) BS01 SC8 2.7.11.22 GO:0000082 ... P24941 17937404 MOAD: ic50=500nM
    PDBbind: -logKd/Ki=6.30, IC50=500nM
    5624 2r3g:A (1.55) BS01 SC9 2.7.11.22 GO:0000082 ... P24941 17937404 MOAD: ic50=800nM
    PDBbind: -logKd/Ki=6.10, IC50=800nM
    5625 2r3h:A (1.5) BS01 SCE 2.7.11.22 GO:0000082 ... P24941 17937404 MOAD: ic50=20000nM
    PDBbind: -logKd/Ki=4.70, IC50=20uM
    5626 2r3i:A (1.28) BS01 SCF 2.7.11.22 GO:0000082 ... P24941 17937404 MOAD: ic50=1000nM
    PDBbind: -logKd/Ki=6.00, IC50=1uM
    5627 2r3j:A (1.65) BS01 SCJ 2.7.11.22 GO:0000082 ... P24941 17937404 MOAD: ic50=10nM
    PDBbind: -logKd/Ki=8.00, IC50=10nM
    5628 2r3k:A (1.7) BS01 SCQ 2.7.11.22 GO:0000082 ... P24941 17937404 MOAD: ic50=100nM
    PDBbind: -logKd/Ki=7.00, IC50=100nM
    5629 2r3l:A (1.65) BS01 SCW 2.7.11.22 GO:0000082 ... P24941 17937404 MOAD: ic50=100nM
    PDBbind: -logKd/Ki=7.00, IC50=100nM
    5630 2r3m:A (1.7) BS01 SCX 2.7.11.22 GO:0000082 ... P24941 17937404 MOAD: ic50=10nM
    PDBbind: -logKd/Ki=8.00, IC50=10nM
    5631 2r3n:A (1.63) BS01 SCZ 2.7.11.22 GO:0000082 ... P24941 17937404 MOAD: ic50=70nM
    PDBbind: -logKd/Ki=7.15, IC50=70nM
    5632 2r3o:A (1.8) BS01 2SC 2.7.11.22 GO:0000082 ... P24941 17937404 MOAD: ic50=600nM
    PDBbind: -logKd/Ki=6.22, IC50=600nM
    5633 2r3p:A (1.66) BS01 3SC 2.7.11.22 GO:0000082 ... P24941 17937404 MOAD: ic50=900nM
    PDBbind: -logKd/Ki=6.05, IC50=900nM
    5634 2r3t:A (1.8) BS01 G4G 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18692068 PDBbind: -logKd/Ki=5.85, Ki=1.4uM
    5635 2r3t:B (1.8) BS01 G4G 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18692068 MOAD: Ki=1.4uM
    PDBbind: -logKd/Ki=5.85, Ki=1.4uM
    5636 2r3w:A (1.92) BS01 G3G 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18692068 MOAD: Ki=0.128uM
    PDBbind: -logKd/Ki=6.89, Ki=0.128uM
    5637 2r3w:B (1.92) BS01 G3G 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18692068 PDBbind: -logKd/Ki=6.89, Ki=0.128uM
    5638 2r43:A (1.58) BS01 G3G 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 18692068 PDBbind: -logKd/Ki=6.00, Ki=1uM
    5639 2r43:B (1.58) BS01 G3G 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 18692068 MOAD: Ki=1uM
    PDBbind: -logKd/Ki=6.00, Ki=1uM
    5640 2r4b:A (2.4) BS01 GW7 2.7.10.1 GO:0004672 ... Q15303 18287036 PDBbind: -logKd/Ki=7.18, IC50=66nM
    5641 2r4f:A (1.7) BS01 RIE 1.1.1.34 GO:0004420 ... P04035 18072721 MOAD: ic50=1.5nM
    PDBbind: -logKd/Ki=8.82, IC50=1.5nM
    5642 2r4f:A (1.7) BS02 RIE 1.1.1.34 GO:0004420 ... P04035 18072721 MOAD: ic50=1.5nM
    PDBbind: -logKd/Ki=8.82, IC50=1.5nM
    5643 2r4f:B (1.7) BS01 RIE 1.1.1.34 GO:0004420 ... P04035 18072721 MOAD: ic50=1.5nM
    PDBbind: -logKd/Ki=8.82, IC50=1.5nM
    5644 2r4f:B (1.7) BS02 RIE 1.1.1.34 GO:0004420 ... P04035 18072721 MOAD: ic50=1.5nM
    PDBbind: -logKd/Ki=8.82, IC50=1.5nM
    5645 2r58:A (2.0) BS01 MLY ? GO:0005634 ... Q9VHA0 17932512 PDBbind: -logKd/Ki=2.00, Kd=10mM
    5646 2r59:A (1.89) BS02 PH0 3.3.2.6
    3.4.11.4    		 GO:0003723 ... P09960 18804029 MOAD: Ki=6.5nM
    PDBbind: -logKd/Ki=8.19, Ki=6.5nM
    5647 2r5a:A (2.3) BS01 MLZ ? GO:0005634 ... Q9VHA0 17932512 MOAD: Kd=2500uM
    PDBbind: -logKd/Ki=2.60, Kd=2.5mM
    5648 2r5p:A (2.3) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... O12158 18092815 PDBbind: -logKd/Ki=8.48, Ki=3.3nM
    5649 2r5p:B (2.3) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... O12158 18092815 MOAD: Ki=3.3nM
    PDBbind: -logKd/Ki=8.48, Ki=3.3nM
    5650 2r5q:A (2.3) BS01 1UN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... O12158 18092815 PDBbind: -logKd/Ki=8.57, Ki=2.7nM
    5651 2r5q:B (2.3) BS01 1UN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... O12158 18092815 MOAD: Ki=2.7nM
    PDBbind: -logKd/Ki=8.57, Ki=2.7nM
    5652 2r5y:A (2.6) BS01 dna ? GO:0000981 ... P09077 17981120 PDBbind: Kd=10.3nM
    5653 2r5y:A (2.6) BS02 dna ? GO:0000981 ... P09077 17981120 PDBbind: Kd=10.3nM
    5654 2r5y:B (2.6) BS01 dna ? GO:0000981 ... P40427 17981120 PDBbind: Kd=10.3nM
    5655 2r5y:B (2.6) BS02 dna ? GO:0000981 ... P40427 17981120 PDBbind: Kd=10.3nM
    5656 2r5z:A (2.6) BS01 dna ? GO:0000981 ... P09077 17981120 PDBbind: Kd=8.63nM
    5657 2r5z:A (2.6) BS02 dna ? GO:0000981 ... P09077 17981120 PDBbind: Kd=8.63nM
    5658 2r5z:B (2.6) BS01 dna ? GO:0000981 ... P40427 17981120 PDBbind: Kd=8.63nM
    5659 2r5z:B (2.6) BS02 dna ? GO:0000981 ... P40427 17981120 PDBbind: Kd=8.63nM
    5660 2r64:A (2.3) BS01 740 2.7.11.22 GO:0000082 ... P24941 18353638 MOAD: ic50=0.03uM
    PDBbind: -logKd/Ki=7.52, IC50=0.03uM
    BindingDB: IC50=30nM
    5661 2r6f:A (3.2) BS01 ADP ? GO:0003677 ... Q5KVB6 18158267 PDBbind: -logKd/Ki=8.00, Kd=10nM
    5662 2r6f:A (3.2) BS02 ADP ? GO:0003677 ... Q5KVB6 18158267 PDBbind: -logKd/Ki=8.00, Kd=10nM
    5663 2r6n:A (1.95) BS01 CKE 3.4.22.38 GO:0006508 ... P43235 17911019 PDBbind: -logKd/Ki=9.00, IC50=1nM
    5664 2r6w:A (2.0) BS01 LLB ? N/A P03372 18474858 MOAD: Ki=0.44nM
    PDBbind: -logKd/Ki=9.36, Ki=0.44nM
    5665 2r6y:A (2.0) BS01 LLC ? N/A P03372 18474858 MOAD: Ki=0.32nM
    PDBbind: -logKd/Ki=9.49, Ki=0.32nM
    BindingDB: IC50=120nM
    5666 2r75:1 (1.402) BS01 01G ? GO:0000917 ... O66809 18291323 MOAD: Kd=714nM
    PDBbind: -logKd/Ki=6.15, Kd=714nM
    5667 2r7b:A (2.7) BS02 253 2.7.11.1 GO:0004672 ... O15530 17941624 PDBbind: -logKd/Ki=7.22, IC50=0.06uM
    BindingDB: IC50=60nM
    5668 2r8q:A (1.5) BS02 IBM 3.1.4.- GO:0004114 ... Q6S996 17944832 MOAD: ic50=580uM
    PDBbind: -logKd/Ki=3.24, IC50=580uM
    BindingDB: IC50=580000nM
    5669 2r8s:H (1.95) BS01 rna N/A N/A N/A 18162543 PDBbind: Kd=51nM
    5670 2r8s:L (1.95) BS01 rna N/A N/A N/A 18162543 PDBbind: Kd=51nM
    5671 2r9m:A (1.97) BS01 Y11 3.4.22.27 GO:0006508 ... P25774 N/A PDBbind: -logKd/Ki=8.82, IC50=1.5nM
    BindingDB: IC50=1.5nM
    5672 2r9s:A (2.4) BS01 255 2.7.11.24 GO:0004672 ... P53779 17911023 MOAD: ic50=0.15uM
    PDBbind: -logKd/Ki=6.82, IC50=0.15uM
    BindingDB: IC50=150nM
    5673 2r9w:A (1.8) BS01 23C 3.5.2.6 GO:0008800 ... P00811 18333608 MOAD: Ki=8uM
    PDBbind: -logKd/Ki=5.10, Ki=8uM
    BindingDB: Ki=5000nM
    5674 2r9x:A (1.9) BS01 WH6 3.5.2.6 GO:0008800 ... P00811 18333608 MOAD: Ki=14uM
    PDBbind: -logKd/Ki=4.85, Ki=14uM
    5675 2ra0:A (2.3) BS01 JNJ 3.4.21.6 GO:0004252 ... P00742 18159923 MOAD: Ki=15.9nM
    PDBbind: -logKd/Ki=7.80, Ki=15.9nM
    BindingDB: Ki=15.9nM
    5676 2ra6:A (1.5) BS02 ETY ? GO:0005576 ... Q29147 17685895 PDBbind: -logKd/Ki=4.52, Kd=30uM
    5677 2rbf:A (2.25) BS01 dna 1.2.1.88
    1.5.5.2    		 GO:0006355 ... P09546 18586269 PDBbind: Kd=210nM
    5678 2rbf:A (2.25) BS02 dna 1.2.1.88
    1.5.5.2    		 GO:0006355 ... P09546 18586269 PDBbind: Kd=210nM
    5679 2rbf:B (2.25) BS01 dna 1.2.1.88
    1.5.5.2    		 GO:0006355 ... P09546 18586269 PDBbind: Kd=210nM
    5680 2rbf:B (2.25) BS02 dna 1.2.1.88
    1.5.5.2    		 GO:0006355 ... P09546 18586269 PDBbind: Kd=210nM
    5681 2rc8:A (1.45) BS01 DSN ? GO:0015276 ... Q9R1M7 18636091 PDBbind: -logKd/Ki=6.52, IC50=0.3uM
    5682 2rc9:A (1.96) BS01 1AC ? GO:0015276 ... Q9R1M7 18636091 PDBbind: -logKd/Ki=7.40, IC50=0.04uM
    5683 2rcb:A (1.62) BS01 DSN ? GO:0015276 ... Q8VHN2 18636091 PDBbind: -logKd/Ki=6.79, Kd=163nM
    5684 2rcn:A (2.25) BS02 GDP 3.6.1.- GO:0003924 ... Q8ZKB0 18007041 MOAD: Kd=1uM
    PDBbind: -logKd/Ki=6.00, Kd=1.0uM
    5685 2rcw:A (2.8) BS01 AAI 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 N/A PDBbind: -logKd/Ki=8.10, Ki=8nM
    BindingDB: Ki=8nM, EC50=3nM
    5686 2rcx:A (2.0) BS01 SM4 3.5.2.6 GO:0008800 ... P00811 17997318 PDBbind: -logKd/Ki=9.00, Ki=1nM
    5687 2rd6:A (2.3) BS01 78P 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 N/A PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: IC50=1.5nM, Ki=5nM, EC50=5.9nM, Kd=1.7nM
    5688 2reg:A (1.9) BS01 CHT ? GO:0015871 ... Q92N37 18779321 MOAD: Kd=2.3uM
    PDBbind: -logKd/Ki=5.64, Kd=2.3uM
    5689 2rf2:A (2.4) BS01 MRX 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 18083561 MOAD: ic50=3.6nM
    PDBbind: -logKd/Ki=8.44, IC50=3.6nM
    5690 2rfh:A (1.7) BS02 23N 3.4.17.1 GO:0004181 ... P00730 18289863 MOAD: Ki=0.15uM
    PDBbind: -logKd/Ki=6.82, Ki=0.15uM
    5691 2rfn:A (2.5) BS01 AM7 2.7.10.1 GO:0004672 ... P08581 18055465 MOAD: ic50=5nM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: IC50=8.9nM, Ki=8.9nM
    5692 2rg5:A (2.4) BS01 279 2.7.11.24 GO:0000077 ... Q16539 18072718 MOAD: ic50=3.1nM
    PDBbind: -logKd/Ki=8.51, IC50=3.1nM
    BindingDB: IC50=3.1nM, EC50=61nM
    5693 2rg6:A (1.72) BS01 287 2.7.11.24 GO:0000077 ... Q16539 18072718 MOAD: ic50=2.2nM
    PDBbind: -logKd/Ki=8.66, IC50=2.2nM
    BindingDB: IC50=2.2nM, EC50=10nM
    5694 2rg6:A (1.72) BS02 287 2.7.11.24 GO:0000077 ... Q16539 18072718 MOAD: ic50=2.2nM
    PDBbind: -logKd/Ki=8.66, IC50=2.2nM
    BindingDB: IC50=2.2nM, EC50=10nM
    5695 2rgp:A (2.0) BS01 HYZ 2.7.10.1 GO:0004672 ... P00533 18653333 MOAD: ic50=0.03uM
    PDBbind: -logKd/Ki=7.52, IC50=0.03uM
    5696 2ri9:A (1.95) BS02 LDY 3.2.1.113 GO:0004571 ... P31723 18323617 PDBbind: -logKd/Ki=3.22, Ki=0.6mM
    5697 2ria:A (1.8) BS04 289 ? N/A P35247 18092821 MOAD: ic50=2.7mM
    PDBbind: -logKd/Ki=2.57, IC50=2.7mM
    5698 2rib:A (1.8) BS04 GMH ? N/A P35247 18092821 PDBbind: -logKd/Ki=2.82, IC50=1.5mM
    5699 2rin:A (1.8) BS01 ACH ? GO:0015871 ... Q92N37 18779321 MOAD: Kd=100uM
    PDBbind: -logKd/Ki=4.00, Kd=100uM
    5700 2rio:A (2.4) BS02 ADP 2.7.11.1
    3.1.26.-    		 GO:0004521 ... P32361 18191223 PDBbind: -logKd/Ki=4.69, Kd=20.4uM
    5701 2rip:A (2.9) BS01 34Q 3.4.14.5 GO:0001618 ... P27487 17977724 PDBbind: -logKd/Ki=7.19, IC50=65nM
    BindingDB: IC50=65nM
    5702 2rjp:A (2.8) BS05 886 3.4.24.82 GO:0004222 ... O75173 18042673 PDBbind: -logKd/Ki=7.00, IC50=0.1uM
    BindingDB: IC50=100nM
    5703 2rjr:A (2.1) BS01 295 4.3.1.23
    5.4.3.6    		 GO:0003824 ... Q8GMG0 18078753 PDBbind: -logKd/Ki=1.94, IC50=11.6mM
    5704 2rk8:A (2.0) BS02 PPF 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 18197707 MOAD: Ki=230uM
    PDBbind: -logKd/Ki=3.64, Ki=230uM
    5705 2rka:A (1.95) BS01 PGA 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 18197707 MOAD: Ki=1mM
    PDBbind: -logKd/Ki=3.00, Ki=1mM
    5706 2rkd:A (1.9) BS03 3PP 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 18197707 MOAD: Ki=1.9mM
    PDBbind: -logKd/Ki=2.72, Ki=1.9mM
    5707 2rke:A (1.8) BS03 SAT 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 18197707 MOAD: Ki=82.5uM
    PDBbind: -logKd/Ki=4.08, Ki=82.5uM
    5708 2rkf:A (1.8) BS01 AB1 3.1.26.13 GO:0004190 ... Q90JJ9 18400858 MOAD: Ki=0.83nM
    PDBbind: -logKd/Ki=9.08, Ki=0.83nM
    5709 2rkf:B (1.8) BS01 AB1 3.1.26.13 GO:0004190 ... Q90JJ9 18400858 PDBbind: -logKd/Ki=9.08, Ki=0.83nM
    5710 2rkg:A (1.8) BS01 AB1 3.1.26.13 GO:0004190 ... A0F6C5 18400858 PDBbind: -logKd/Ki=8.09, Ki=8.2nM
    5711 2rkg:B (1.8) BS01 AB1 3.1.26.13 GO:0004190 ... A0F6C5 18400858 MOAD: Ki=8.2nM
    PDBbind: -logKd/Ki=8.09, Ki=8.2nM
    5712 2rkm:A (1.8) BS01 LYS ? GO:0015031 ... P06202 9245406 PDBbind: -logKd/Ki=3.90, Ki=125uM
    5713 2rkm:A (1.8) BS02 LYS ? GO:0015031 ... P06202 9245406 PDBbind: -logKd/Ki=3.90, Ki=125uM
    5714 2rkn:A (1.6) BS03 LP3 ? GO:0005504 ... Q8W453 18552128 MOAD: Kd=0.06uM
    PDBbind: -logKd/Ki=7.22, Kd=0.06uM
    5715 2rkn:A (1.6) BS04 LP3 ? GO:0005504 ... Q8W453 18552128 MOAD: Kd=0.06uM
    PDBbind: -logKd/Ki=7.22, Kd=0.06uM
    5716 2rku:A (1.95) BS02 R78 2.7.11.21 GO:0004672 ... P53350 18005335 MOAD: ic50=8nM
    PDBbind: -logKd/Ki=8.30, IC50=5.0nM
    BindingDB: IC50=0.830000nM, Kd=0.190000nM, Ki=<1nM
    5717 2rl5:A (2.65) BS01 2RL 2.7.10.1 GO:0004672 ... P35968 18311900 PDBbind: -logKd/Ki=8.40, IC50=4nM
    BindingDB: IC50=0.5nM
    5718 2rok:A (-1.00) BS01 7MG 3.1.13.4 GO:0003676 ... Q8VDG3 18641416 PDBbind: -logKd/Ki=4.35, Kd=45uM
    5719 2rok:A (-1.00) BS02 GDP 3.1.13.4 GO:0003676 ... Q8VDG3 18641416 PDBbind: -logKd/Ki=4.35, Kd=45uM
    5720 2rox:A (2.0) BS01 T44 ? GO:0005179 ... P02766 15299640 PDBbind: -logKd/Ki=4.98, IC50=10.5uM
    BindingDB: IC50=10500nM
    5721 2rox:B (2.0) BS01 T44 ? GO:0005179 ... P02766 15299640 PDBbind: -logKd/Ki=4.98, IC50=10.5uM
    BindingDB: IC50=10500nM
    5722 2rqc:A (-1.00) BS01 rna ? GO:0003676 ... Q92879 19553194 PDBbind: Kd=1.9uM
    5723 2rra:A (-1.00) BS01 rna ? GO:0003676 ... P62995 20926394 PDBbind: Kd=1.5uM
    5724 2ru3:A (-1.00) BS01 rna ? GO:0003676 ... O45189 25132178 PDBbind: Kd=565nM
    5725 2sim:A (1.6) BS01 DAN 3.2.1.18 GO:0004308 ... P29768 8656428 MOAD: Ki=0.38mM
    PDBbind: -logKd/Ki=3.42, Ki=0.38mM
    5726 2ssp:E (2.25) BS01 dna 3.2.2.27 GO:0004844 ... P13051 9724657 PDBbind: Kd=19nM
    5727 2ssp:E (2.25) BS02 dna 3.2.2.27 GO:0004844 ... P13051 9724657 PDBbind: Kd=19nM
    5728 2std:A (2.1) BS01 CRP 4.2.1.94 GO:0005575 ... P56221 9665698 MOAD: Kd=0.14nM
    PDBbind: -logKd/Ki=9.85, Ki=0.14nM
    BindingDB: Ki=30nM
    5729 2tmn:E (1.6) BS06 0FA 3.4.24.27 GO:0004222 ... P00800 3709536 MOAD: Ki=1.3uM
    PDBbind: -logKd/Ki=5.89, Ki=1.3uM
    BindingDB: Ki=21300nM, Kd=1288nM
    5730 2toh:A (2.3) BS02 HBI 1.14.16.2 GO:0004497 ... P04177 9753429 MOAD: Ki=70uM
    PDBbind: -logKd/Ki=4.15, Ki=70uM
    5731 2tpi:Z (2.1) BS01 ILE 3.4.21.4 GO:0004175 ... P00760 N/A PDBbind: -logKd/Ki=4.31, Kd=49uM
    5732 2tpi:Z (2.1) BS02 VAL 3.4.21.4 GO:0004175 ... P00760 N/A PDBbind: -logKd/Ki=4.31, Kd=49uM
    5733 2tsr:A (2.6) BS02 D16 2.1.1.45 GO:0000900 ... P45352 9894005 PDBbind: -logKd/Ki=7.54, Ki=29nM
    5734 2tsr:B (2.6) BS02 D16 2.1.1.45 GO:0000900 ... P45352 9894005 PDBbind: -logKd/Ki=7.54, Ki=29nM
    5735 2upj:A (3.0) BS01 U02 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 7658450 PDBbind: -logKd/Ki=7.39, Ki=0.041uM
    5736 2upj:B (3.0) BS01 U02 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 7658450 PDBbind: -logKd/Ki=7.39, Ki=0.041uM
    5737 2usn:A (2.2) BS06 IN8 3.4.24.17 GO:0004222 ... P08254 9792098 MOAD: Ki=0.31uM
    PDBbind: -logKd/Ki=6.51, Ki=0.31uM
    5738 2uue:A (2.06) BS01 MTZ 2.7.11.22 GO:0000082 ... P24941 17051658 PDBbind: -logKd/Ki=6.13, IC50=0.74uM
    5739 2uuo:A (2.5) BS01 LK3 6.3.2.9 GO:0005515 ... P14900 19007109 MOAD: ic50=170uM
    PDBbind: -logKd/Ki=3.77, IC50=170uM
    BindingDB: IC50=170000nM
    5740 2uup:A (1.88) BS01 LK4 6.3.2.9 GO:0005515 ... P14900 19007109 MOAD: ic50=105uM
    PDBbind: -logKd/Ki=3.98, IC50=105uM
    BindingDB: IC50=105000nM
    5741 2uvm:A (1.94) BS01 GVF 2.7.11.1 N/A P31749 17432822 PDBbind: -logKd/Ki=7.10, Ki=0.08uM
    BindingDB: Ki=80nM
    5742 2uw0:A (2.0) BS02 GVK 2.7.11.11 GO:0001669 ... P00517 17451235 PDBbind: -logKd/Ki=7.70, IC50=20nM
    5743 2uw3:A (2.19) BS02 GVG 2.7.11.11 GO:0001669 ... P00517 17451234 MOAD: ic50=80uM
    PDBbind: -logKd/Ki=4.10, IC50=80uM
    5744 2uw4:A (2.0) BS02 L15 2.7.11.11 GO:0001669 ... P00517 17451234 MOAD: ic50=5.2uM
    PDBbind: -logKd/Ki=5.28, IC50=5.2uM
    5745 2uw5:A (2.14) BS02 GVN 2.7.11.11 GO:0001669 ... P00517 17451234 MOAD: ic50=34nM
    PDBbind: -logKd/Ki=7.51, IC50=31nM
    5746 2uw6:A (2.23) BS02 GVO 2.7.11.11 GO:0001669 ... P00517 17451234 MOAD: ic50=0.28uM
    PDBbind: -logKd/Ki=6.55, IC50=0.28uM
    5747 2uw7:A (2.1) BS02 GVP 2.7.11.11 GO:0001669 ... P00517 17451234 MOAD: ic50=18nM
    PDBbind: -logKd/Ki=7.74, IC50=18nM
    5748 2uw8:A (2.0) BS02 GVQ 2.7.11.11 GO:0001669 ... P00517 17451234 MOAD: ic50=77uM
    PDBbind: -logKd/Ki=4.11, IC50=77uM
    5749 2uwd:A (1.9) BS03 2GG 3.6.4.10 GO:0005524 ... P07900 17431102 MOAD: Kd=4.5nM
    PDBbind: -logKd/Ki=8.35, Kd=4.5nM
    5750 2uwl:A (1.9) BS01 895 3.4.21.6 GO:0004252 ... P00742 17420122 MOAD: Ki=4nM
    PDBbind: -logKd/Ki=8.40, Ki=4nM
    BindingDB: Ki=4nM
    5751 2uwm:A (2.31) BS01 rna ? GO:0001514 ... Q2RFK4 17502103 PDBbind: Kd=10uM
    5752 2uwm:A (2.31) BS02 rna ? GO:0001514 ... Q2RFK4 17502103 PDBbind: Kd=10uM
    5753 2uwm:B (2.31) BS01 rna ? GO:0001514 ... Q2RFK4 17502103 PDBbind: Kd=10uM
    5754 2uwm:B (2.31) BS02 rna ? GO:0001514 ... Q2RFK4 17502103 PDBbind: Kd=10uM
    5755 2uwo:A (1.75) BS01 701 3.4.21.6 GO:0004252 ... P00742 17420122 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    BindingDB: Ki=2nM
    5756 2uwp:A (1.75) BS01 894 3.4.21.6 GO:0004252 ... P00742 17420122 MOAD: Ki=154nM
    PDBbind: -logKd/Ki=6.81, Ki=154nM
    BindingDB: Ki=154nM
    5757 2uxi:A (2.5) BS01 G50 ? GO:0000976 ... Q9AIU0 17466326 MOAD: Kd=0.05uM
    PDBbind: -logKd/Ki=7.30, Kd=0.05uM
    5758 2uxi:B (2.5) BS01 G50 ? GO:0000976 ... Q9AIU0 17466326 MOAD: Kd=0.05uM
    PDBbind: -logKd/Ki=7.30, Kd=0.05uM
    5759 2uxi:B (2.5) BS02 G50 ? GO:0000976 ... Q9AIU0 17466326 MOAD: Kd=0.05uM
    PDBbind: -logKd/Ki=7.30, Kd=0.05uM
    5760 2uxu:A (2.3) BS01 NAR ? GO:0000976 ... Q9AIU0 17466326 MOAD: Kd=18uM
    PDBbind: -logKd/Ki=4.74, Kd=18uM
    5761 2uxx:A (2.74) BS01 FAJ 1.14.99.66 GO:0005634 ... O60341 17569509 PDBbind: -logKd/Ki=3.30, Ki=500uM
    5762 2uxz:A (1.75) BS01 HI1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 18215014 MOAD: Ki=3.3nM
    PDBbind: -logKd/Ki=8.48, Ki=3.3nM
    5763 2uxz:B (1.75) BS01 HI1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 18215014 PDBbind: -logKd/Ki=8.48, Ki=3.3nM
    5764 2uy0:A (1.76) BS01 HV1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 18215014 PDBbind: -logKd/Ki=6.92, Ki=120nM
    5765 2uy0:B (1.76) BS01 HV1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 18215014 MOAD: Ki=120nM
    PDBbind: -logKd/Ki=6.92, Ki=120nM
    5766 2uy3:A (1.9) BS01 H33 3.2.1.14 GO:0004553 ... P29029 17524989 MOAD: Ki=600uM
    PDBbind: -logKd/Ki=3.22, Ki=600uM
    BindingDB: Ki=340000nM
    5767 2uy4:A (1.75) BS01 AZM 3.2.1.14 GO:0004553 ... P29029 17524989 MOAD: Ki=21uM
    PDBbind: -logKd/Ki=4.68, Ki=21uM
    BindingDB: Ki=21000nM
    5768 2uy5:A (1.6) BS01 H35 3.2.1.14 GO:0004553 ... P29029 17524989 MOAD: Ki=3.2uM
    PDBbind: -logKd/Ki=5.49, Ki=3.2uM
    BindingDB: Ki=3200nM
    5769 2uyi:A (2.1) BS02 K02 ? GO:0003777 ... P52732 17498954 MOAD: ic50=0.48uM
    PDBbind: -logKd/Ki=6.32, IC50=0.48uM
    BindingDB: IC50=480nM
    5770 2uym:A (2.11) BS02 K03 ? GO:0003777 ... P52732 17498954 MOAD: ic50=3.1uM
    PDBbind: -logKd/Ki=5.51, IC50=3.1uM
    BindingDB: IC50=3100nM
    5771 2uyn:A (1.6) BS01 2KT 3.5.4.- GO:0005829 ... P0AGL2 17506874 PDBbind: -logKd/Ki=2.70, Kd=2mM
    5772 2uyn:B (1.6) BS01 2KT 3.5.4.- GO:0005829 ... P0AGL2 17506874 PDBbind: -logKd/Ki=2.70, Kd=2mM
    5773 2uyn:B (1.6) BS02 2KT 3.5.4.- GO:0005829 ... P0AGL2 17506874 PDBbind: -logKd/Ki=2.70, Kd=2mM
    5774 2uyq:A (1.8) BS01 SAM 2.1.1.- GO:0008168 ... Q9CCZ4 17660248 MOAD: Kd=2.1uM
    PDBbind: -logKd/Ki=5.68, Kd=2.1uM
    5775 2uyw:A (1.7) BS01 BTN ? GO:0009374 ... A7YYL1 19788720 PDBbind: -logKd/Ki=13.00, Kd=0.1pM
    5776 2uyw:D (1.7) BS01 BTN ? GO:0009374 ... A7YYL1 19788720 PDBbind: -logKd/Ki=13.00, Kd=0.1pM
    5777 2uz9:A (2.3) BS02 XAN 3.5.4.3 GO:0000255 ... Q9Y2T3 N/A PDBbind: -logKd/Ki=5.71, Ki=1.96uM
    5778 2uzb:A (2.7) BS01 C75 2.7.11.22 GO:0000082 ... P24941 17570665 PDBbind: -logKd/Ki=6.92, IC50=0.12uM
    BindingDB: IC50=120nM
    5779 2uzd:A (2.72) BS01 C85 2.7.11.22 GO:0000082 ... P24941 17570665 PDBbind: -logKd/Ki=6.74, IC50=0.18uM
    BindingDB: IC50=180nM
    5780 2uze:A (2.4) BS01 C95 2.7.11.22 GO:0000082 ... P24941 17570665 MOAD: ic50=47uM
    PDBbind: -logKd/Ki=4.33, IC50=47uM
    BindingDB: IC50=47000nM
    5781 2uzj:A (1.55) BS01 E64 3.4.22.10 GO:0006508 ... P0C0J0 19712682 PDBbind: -logKd/Ki=4.57, Kd=27uM
    5782 2uzl:A (2.4) BS01 C94 2.7.11.22 GO:0000082 ... P24941 17570665 MOAD: ic50=0.61uM
    PDBbind: -logKd/Ki=6.21, IC50=0.61uM
    BindingDB: IC50=610nM
    5783 2uzn:A (2.3) BS01 C96 2.7.11.22 GO:0000082 ... P24941 17570665 MOAD: ic50=0.03uM
    PDBbind: -logKd/Ki=7.52, IC50=0.03uM
    BindingDB: IC50=30nM
    5784 2uzo:A (2.3) BS01 C62 2.7.11.22 GO:0000082 ... P24941 17570665 MOAD: ic50=27uM
    PDBbind: -logKd/Ki=4.57, IC50=27uM
    BindingDB: IC50=27000nM
    5785 2uzv:A (2.5) BS02 SS5 2.7.11.11 GO:0001669 ... P00517 17523610 MOAD: ic50>3uM
    PDBbind: -logKd/Ki=5.87, IC50=1.36uM
    BindingDB: IC50=>3000nM
    5786 2v00:A (1.55) BS01 V15 3.4.23.22 GO:0004190 ... P11838 17985861 MOAD: Kd=0.22mM
    PDBbind: -logKd/Ki=3.66, Kd=0.22mM
    BindingDB: Kd=220000nM
    5787 2v0c:A (1.85) BS05 ANZ 6.1.1.4 GO:0000166 ... Q7SIE4 17588934 PDBbind: -logKd/Ki=5.68, IC50=2.1uM
    5788 2v0n:A (2.71) BS03 C2E 2.7.7.65 GO:0000160 ... B8GZM2 17697997 PDBbind: -logKd/Ki=6.30, Ki=0.5uM
    5789 2v0n:A (2.71) BS04 C2E 2.7.7.65 GO:0000160 ... B8GZM2 17697997 PDBbind: -logKd/Ki=6.30, Ki=0.5uM
    5790 2v0n:A (2.71) BS08 C2E 2.7.7.65 GO:0000160 ... B8GZM2 17697997 PDBbind: -logKd/Ki=6.30, Ki=0.5uM
    5791 2v0n:B (2.71) BS01 C2E 2.7.7.65 GO:0000160 ... B8GZM2 17697997 PDBbind: -logKd/Ki=6.30, Ki=0.5uM
    5792 2v0n:B (2.71) BS04 C2E 2.7.7.65 GO:0000160 ... B8GZM2 17697997 PDBbind: -logKd/Ki=6.30, Ki=0.5uM
    5793 2v0n:B (2.71) BS05 C2E 2.7.7.65 GO:0000160 ... B8GZM2 17697997 PDBbind: -logKd/Ki=6.30, Ki=0.5uM
    5794 2v0z:C (2.2) BS01 C41 3.4.23.15 GO:0004190 ... P00797 10903938 MOAD: ic50=0.0006uM
    PDBbind: -logKd/Ki=9.22, IC50=0.6nM
    BindingDB: IC50=0.6nM
    5795 2v10:C (3.1) BS01 C61 3.4.23.15 GO:0004190 ... P00797 10903938 PDBbind: -logKd/Ki=9.40, IC50=0.4nM
    BindingDB: IC50=1nM
    5796 2v11:C (3.1) BS01 C80 3.4.23.15 GO:0004190 ... P00797 10903938 PDBbind: -logKd/Ki=8.52, IC50=3nM
    BindingDB: IC50=3nM
    5797 2v12:C (3.2) BS01 C39 3.4.23.15 GO:0004190 ... P00797 10903938 PDBbind: -logKd/Ki=9.05, IC50=0.9nM
    BindingDB: IC50=0.9nM
    5798 2v13:A (2.8) BS01 C40 3.4.23.15 GO:0004190 ... P00797 10903938 PDBbind: -logKd/Ki=7.59, IC50=26nM
    BindingDB: IC50=22nM
    5799 2v16:C (2.8) BS01 C47 3.4.23.15 GO:0004190 ... P00797 10903938 PDBbind: -logKd/Ki=8.22, IC50=6nM
    BindingDB: IC50=0.8nM
    5800 2v22:B (2.6) BS01 C35 ? GO:0016538 ... P20248 17051658 PDBbind: -logKd/Ki=5.39, IC50=4.1uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218