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BioLiP Library
>protein
SFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKYQKRKLKVQ

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2kae:A 56 56 1.0000 1.0000 1.0000 3.89e-36
2 5o9b:A 68 40 0.2857 0.2353 0.4000 8.67e-05
3 2m9w:A 63 43 0.3036 0.2698 0.3953 1.18e-04 8vg0:T, 8vg1:T
4 4hca:A 99 40 0.2857 0.1616 0.4000 2.53e-04 4hc7:B
5 4hca:A 99 41 0.2857 0.1616 0.3902 0.005 4hc7:B
6 4hc7:A 108 40 0.2857 0.1481 0.4000 2.70e-04 3dfv:D, 3dfv:C, 3dfx:A, 3dfx:B, 4hc9:A
7 4hc7:A 108 40 0.2500 0.1296 0.3500 0.005 3dfv:D, 3dfv:C, 3dfx:A, 3dfx:B, 4hc9:A
8 3vd6:C 96 40 0.2679 0.1562 0.3750 4.70e-04 2l6y:A, 2l6z:A, 3vek:C, 3vek:F, 1y0j:A
9 6zfv:A 63 40 0.2500 0.2222 0.3500 0.001 1gnf:A
10 2gat:A 66 41 0.3214 0.2727 0.4390 0.001 1gat:A, 1gau:A, 3gat:A
11 4gat:A 66 41 0.2679 0.2273 0.3659 0.019 5gat:A, 6gat:A, 7gat:A, 2vus:I, 2vus:J, 2vus:K, 2vus:L, 2vus:M, 2vus:N, 2vus:O, 2vus:P, 2vut:I, 2vut:J, 2vut:K, 2vut:L, 2vut:M, 2vut:N, 2vut:O, 2vut:P, 2vuu:I, 2vuu:J, 2vuu:K, 2vuu:L, 2vuu:M, 2vuu:N, 2vuu:O, 2vuu:P
12 8j48:A 38 33 0.2500 0.3684 0.4242 0.034 8j48:D
13 7uch:A 636 25 0.2143 0.0189 0.4800 0.50 6b39:A, 6b3a:A, 6b3b:A
14 1cgt:A 684 34 0.2143 0.0175 0.3529 0.96 1cgu:A, 3cgt:A, 4cgt:A, 5cgt:A, 6cgt:A, 7cgt:A, 8cgt:A, 9cgt:A
15 6wni:A 494 25 0.1786 0.0202 0.4000 1.1 6wni:B, 6wnu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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