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BioLiP Library
>protein
SAKQAQQQITSLETQLYEVNETMFGLERERDFYFNKLREIEILVQTHLTTSPMSMENMLERIQAILYSTE

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5m9e:B 71 70 1.0000 0.9859 1.0000 2.36e-46 5m9e:A, 5m9e:C, 5m9e:D
2 6evq:A 70 49 0.3143 0.3143 0.4490 4.44e-07 6evq:B, 3gjo:A, 3gjo:B, 3gjo:C, 3gjo:D, 5n74:A, 5n74:B, 5n74:C, 5n74:D, 5n74:E, 5n74:F, 5n74:G, 5n74:H, 7olg:A, 7olg:B
3 2jbs:D 400 24 0.1857 0.0325 0.5417 3.0 2jbs:A, 2jbs:B, 2jbs:C, 2jbt:A, 2jbt:D, 2jbt:B, 2jbt:C
4 6pfz:A 541 28 0.1571 0.0203 0.3929 3.7 6pfz:D, 6pfz:C, 6pfz:B
5 4cjn:A 642 59 0.2571 0.0280 0.3051 4.3 4bl3:A, 4bl3:B, 4cjn:B, 4cpk:A, 4cpk:B, 4dki:A, 4dki:B, 6h5o:B, 5m18:A, 5m18:B, 5m19:A, 5m19:B, 5m1a:A, 5m1a:B, 1mwt:A, 1mwt:B, 1mwu:A, 1mwu:B, 6q9n:A, 3zfz:A, 3zfz:B, 3zg0:A, 3zg0:B, 3zg5:A, 3zg5:B
6 7jl0:A 662 52 0.2286 0.0242 0.3077 4.7 7jl2:A, 7jl2:C, 7jl2:E
7 6h5o:A 598 59 0.2571 0.0301 0.3051 5.2
8 7elh:B 1264 41 0.1857 0.0103 0.3171 8.6 1mwh:A, 1n1h:A, 1n35:A, 1n38:A, 1uon:A, 7yed:R, 7yfe:R

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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