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BioLiP Library
>protein
RKRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2hap:C 76 74 0.9865 0.9605 0.9865 4.21e-48 2hap:D, 1hwt:C, 1hwt:D, 1hwt:G, 1hwt:H, 1pyc:A, 1qp9:A, 1qp9:B, 1qp9:C, 1qp9:D
2 6gys:B 579 48 0.2432 0.0311 0.3750 6.18e-05 6f07:B, 6gyp:B, 6gys:C, 6gys:J, 6gys:I, 6gyu:B, 7k7g:M, 8ow1:CE
3 3coq:A 89 37 0.2027 0.1685 0.4054 0.042 3coq:B, 1d66:A, 1d66:B, 7uik:T, 7uik:U, 7uio:GA, 7uio:GB
4 1aw6:A 43 31 0.1757 0.3023 0.4194 0.071
5 1ajy:A 71 40 0.1892 0.1972 0.3500 0.072 1ajy:B, 1zme:C, 1zme:D
6 1pyi:A 88 27 0.1622 0.1364 0.4444 0.36 1pyi:B
7 1cld:A 33 24 0.1622 0.3636 0.5000 0.83
8 2yfn:A 719 31 0.1486 0.0153 0.3548 2.2 2yfo:A
9 2csh:A 110 27 0.1486 0.1000 0.4074 5.3
10 8i9r:Cg 233 35 0.1486 0.0472 0.3143 5.6 8i9t:Cg
11 4ail:C 750 31 0.1486 0.0147 0.3548 6.8 2jgu:A
12 3i6t:B 364 12 0.1216 0.0247 0.7500 7.0 3i6t:A, 3i6t:C, 3i6t:D
13 6seh:C 252 30 0.1351 0.0397 0.3333 9.0 6seh:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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