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BioLiP Library
>protein
QPVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFW

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1l4a:A 66 66 1.0000 1.0000 1.0000 4.59e-42
2 3hd7:A 91 60 0.8030 0.5824 0.8833 3.19e-33 5w5c:A
3 2dq3:A 425 38 0.2424 0.0376 0.4211 0.046 2dq3:B
4 8b9w:A 329 40 0.2273 0.0456 0.3750 0.94 8b9w:B
5 3kyq:A 193 52 0.1970 0.0674 0.2500 2.0
6 5kr6:B 460 21 0.1515 0.0217 0.4762 5.3 5kr6:A
7 5hkk:K 478 41 0.1970 0.0272 0.3171 6.1 5hkk:A, 5hkk:B, 5hkk:C, 5hkk:I, 5hkk:J, 5ik2:A, 5ik2:B, 5ik2:C, 5ik2:I, 5ik2:J, 5ik2:K
8 8t85:A 335 41 0.1970 0.0388 0.3171 6.9 7lcm:A
9 8j3p:A 374 39 0.1515 0.0267 0.2564 8.2 8j3o:A, 8j3o:B, 8j3o:C, 8j3o:D, 8j3p:B, 8j3p:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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