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BioLiP Library
>protein
PKQTWWGDVLKGNNNSEAGKFVPGWGTTPVMAGFVVMITLLLLIMLQVYNHTIVLDGVDAGWTSLGGF

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ymi:H 68 68 1.0000 1.0000 1.0000 1.45e-44 7ymi:h, 7ymm:1H, 7ymm:2H, 7ymm:3H, 7ymm:4H
2 8wql:HD 64 64 0.4412 0.4688 0.4688 3.34e-15 8wql:HE, 8wql:H1, 8wql:h1, 8wql:hD, 8wql:hE
3 6dhe:H 65 65 0.5000 0.5231 0.5231 4.60e-15 3a0b:H, 3a0b:h, 3a0h:H, 3a0h:h, 2axt:H, 2axt:h, 5b5e:H, 5b5e:h, 5b66:H, 5b66:h, 7cji:H, 7cji:h, 7cjj:H, 7cjj:h, 7cou:H, 7cou:h, 7czl:H, 7czl:h, 7d1t:H, 7d1t:h, 7d1u:H, 7d1u:h, 6dhe:h, 6dhf:H, 6dhf:h, 6dhg:H, 6dhg:h, 6dhh:H, 6dhh:h, 6dho:H, 6dho:h, 6dhp:H, 6dhp:h, 7dxa:h, 7dxh:h, 5e79:H, 5e79:h, 5e7c:H, 5e7c:h, 7eda:H, 9evx:H, 9evx:h, 8ez5:H, 8ez5:h, 8f4c:H, 8f4c:h, 8f4d:H, 8f4d:h, 8f4e:H, 8f4e:h, 8f4f:H, 8f4f:h, 8f4g:H, 8f4g:h, 8f4h:H, 8f4h:h, 8f4i:H, 8f4i:h, 8f4j:H, 8f4j:h, 8f4k:H, 8f4k:h, 4fby:H, 4fby:W, 8gn0:H, 8gn0:h, 8gn1:H, 8gn1:h, 8gn2:H, 8gn2:h, 5gth:H, 5gth:h, 5gti:H, 5gti:h, 5h2f:H, 5h2f:h, 4il6:H, 4il6:h, 8ir5:H, 8ir5:h, 8ir6:H, 8ir6:h, 8ir7:H, 8ir7:h, 8ir8:H, 8ir8:h, 8ir9:H, 8ir9:h, 8ira:H, 8ira:h, 8irb:H, 8irb:h, 8irc:H, 8irc:h, 8ird:H, 8ird:h, 8ire:H, 8ire:h, 8irf:H, 8irf:h, 8irg:H, 8irg:h, 8irh:H, 8irh:h, 8iri:H, 8iri:h, 4ixq:H, 4ixq:h, 4ixr:H, 4ixr:h, 6jlj:H, 6jlj:h, 6jlk:H, 6jlk:h, 6jll:H, 6jll:h, 6jlm:H, 6jlm:h, 6jln:H, 6jln:h, 6jlo:H, 6jlo:h, 6jlp:H, 6jlp:h, 5kaf:H, 5kaf:h, 5kai:H, 5kai:h, 3kzi:H, 5mx2:H, 5mx2:h, 7nho:H, 7nhp:H, 7nhq:H, 4pbu:H, 4pbu:h, 4pj0:H, 4pj0:h, 7rf1:H, 7rf1:h, 7rf2:H, 7rf2:h, 7rf3:H, 7rf3:h, 7rf4:H, 7rf4:h, 7rf5:H, 7rf5:h, 7rf6:H, 7rf6:h, 7rf7:H, 7rf7:h, 7rf8:H, 7rf8:h, 4rvy:H, 4rvy:h, 1s5l:H, 1s5l:h, 5tis:H, 5tis:h, 4tnh:H, 4tnh:h, 4tni:H, 4tni:h, 4tnj:H, 4tnj:h, 4tnk:H, 4tnk:h, 4ub6:H, 4ub6:h, 4ub8:H, 4ub8:h, 5v2c:H, 5v2c:h, 4v62:AH, 4v62:BH, 4v82:AH, 4v82:BH, 6w1o:H, 6w1o:h, 6w1p:H, 6w1p:h, 6w1q:H, 6w1q:h, 6w1r:H, 6w1r:h, 6w1t:H, 6w1t:h, 6w1u:H, 6w1u:h, 6w1v:H, 6w1v:h, 5ws5:H, 5ws5:h, 5ws6:H, 5ws6:h, 3wu2:H, 3wu2:h, 7yq2:H, 7yq2:h, 7yq7:H, 7yq7:h, 5zzn:H, 5zzn:h
4 8kde:H 73 52 0.3824 0.3562 0.5000 1.43e-14 6kac:H, 6kac:h, 6kad:H, 6kad:h, 6kaf:H, 6kaf:h, 8r2i:H, 8zee:H
5 7pi0:H 67 52 0.3971 0.4030 0.5192 1.74e-14 7pi0:h, 7pi5:H, 7pi5:h, 7pin:H, 7pin:h, 7pin:H1, 7pin:h1, 7piw:H, 7piw:h, 7piw:H1, 7piw:h1, 7pnk:H, 7pnk:h
6 7y5e:HL 66 64 0.4706 0.4848 0.5000 1.09e-12 8wb4:H, 8wb4:h, 8xlp:h, 8xlp:H, 8xr6:H, 8xr6:h, 7y5e:H6, 7y5e:h6, 7y5e:hL, 7y7a:H9, 7y7a:h9, 7y7a:hE, 7y7a:HE, 7y7a:HO, 7y7a:hO, 7y7a:HZ, 7y7a:hZ, 7y7a:Hm, 7y7a:hm
7 8eqm:H 65 45 0.3382 0.3538 0.5111 1.86e-12 8eqm:h
8 6j3y:H 66 62 0.3529 0.3636 0.3871 2.29e-12 6j3y:h, 6j3z:H, 6j3z:h, 6j40:H, 6j40:h, 8j5k:H, 8j5k:h, 6jlu:H, 6jlu:h, 7vd5:H, 7vd5:h
9 8c29:H 62 62 0.3971 0.4355 0.4355 2.40e-12 8c29:h
10 5xnl:H 60 59 0.3824 0.4333 0.4407 2.50e-12 5xnl:h, 5xnm:H, 5xnm:h, 6yp7:h, 6yp7:H
11 7oui:H 60 59 0.3824 0.4333 0.4407 3.51e-12 3jcu:H, 3jcu:h, 5mdx:H, 5mdx:h, 7oui:h
12 8bd3:H 67 52 0.3529 0.3582 0.4615 6.01e-12 8bd3:h
13 7n8o:H 63 62 0.4412 0.4762 0.4839 2.34e-11 7n8o:h, 7rcv:H, 7rcv:h, 8tow:H, 8tow:h, 6wj6:H
14 4yuu:h1 62 61 0.3971 0.4355 0.4426 3.73e-10 4yuu:H1, 4yuu:H2, 4yuu:h2
15 8iwh:H 65 62 0.3971 0.4154 0.4355 4.27e-09 8iwh:h
16 4mby:A 277 43 0.2353 0.0578 0.3721 1.2 4mby:B, 4mby:C, 4mby:D, 4mby:E, 4mby:G, 4mby:I, 4mby:H, 4mby:J, 4mby:F, 4mbz:B, 4mbz:A, 4mbz:C, 4mbz:E, 4mbz:D, 4mbz:I, 4mbz:H, 4mbz:J, 4mbz:F
17 5hjh:D 178 42 0.2059 0.0787 0.3333 2.0 5hjh:A, 5hjh:B, 5hjh:C, 5i4j:A, 5i4j:B, 5i4j:C, 5i4j:D
18 4pos:J 274 43 0.2353 0.0584 0.3721 2.1 4por:B, 4por:A, 4por:C, 4por:D, 4por:E, 4por:F, 4por:H, 4por:G, 4por:I, 4por:J, 4pos:B, 4pos:A, 4pos:C, 4pos:E, 4pos:D, 4pos:G, 4pos:F, 4pos:H, 4pos:I, 4pot:B, 4pot:A, 4pot:C, 4pot:D, 4pot:E, 4pot:G, 4pot:F, 4pot:H, 4pot:I, 4pot:J
19 4u60:C 274 43 0.2059 0.0511 0.3256 2.3 6hku:B, 6hku:C, 6hku:F, 6hku:I, 6hku:J, 6hku:D, 6hkv:A, 6hkv:B, 6hkv:C, 6hkv:D, 6hkv:E, 6hkv:F, 6hkv:G, 6hkv:H, 6hkv:I, 6hkv:J, 4u60:A, 4u60:D, 4u60:E, 4u60:B, 4u61:A, 4u61:B, 4u61:C, 4u61:E, 4u61:H, 4u61:I, 4u61:J, 4u62:B, 4u62:C, 4u62:J
20 5ik7:A 381 46 0.2206 0.0394 0.3261 4.4 1dyk:A, 5ik4:A, 5ik5:A, 5ik7:B, 5ik8:B, 5ik8:A, 1okq:A, 1qu0:A, 1qu0:B, 1qu0:C, 1qu0:D
21 7b6s:FFF 271 42 0.1912 0.0480 0.3095 5.4 7b6s:AAA, 7b6s:BBB, 7b6s:CCC, 7b6s:DDD, 7b6s:EEE, 7b6s:GGG, 7b6s:HHH, 7b6s:III, 7b6s:JJJ, 7b6t:AAA, 7b6t:CCC, 7b6t:DDD, 7b6t:FFF, 7b6t:HHH, 7b6t:JJJ, 7b6t:GGG, 7b6t:III, 7b6u:AAA, 7b6u:BBB, 7b6u:CCC, 7b6u:DDD, 7b6u:EEE, 7b6u:FFF, 7b6u:GGG, 7b6u:HHH, 7b6u:III, 7b6u:JJJ, 7b6v:AAA, 7b6v:BBB, 7b6v:CCC, 7b6v:DDD, 7b6v:EEE, 7b6v:FFF, 7b6v:GGG, 7b6v:HHH, 7b6v:III, 7b6v:JJJ, 6y63:AAA, 6y63:BBB, 6y63:HHH, 6y63:III, 6y63:EEE, 6y63:DDD, 6y63:GGG, 6y64:D, 6y64:F, 6y64:G, 6y64:J, 6y64:B, 6y64:A, 6y64:C, 6y64:E, 6y64:H, 6y64:I
22 6y60:AAA 260 43 0.2059 0.0538 0.3256 6.2 6y60:DDD, 6y60:EEE, 6y60:FFF, 6y60:HHH, 6y60:III, 6y60:JJJ, 6y60:BBB, 6y60:CCC, 6y60:GGG

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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