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BioLiP Library
>protein
MSVLFQLLIAAFVALSFAMIIGVPVVFSTGDASDDANKLIWGGAAAWVVLLFVAALASI

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ymi:Z 59 59 1.0000 1.0000 1.0000 7.31e-34 7ymi:z, 7ymm:1Z, 7ymm:2Z, 7ymm:3Z, 7ymm:4Z
2 3a0b:Z 62 53 0.4068 0.3871 0.4528 7.05e-10 3a0b:z, 3a0h:Z, 3a0h:z, 2axt:Z, 2axt:z, 5b5e:Z, 5b5e:z, 5b66:Z, 5b66:z, 7cji:Z, 7cji:z, 7cjj:Z, 7cjj:z, 7cou:Z, 7cou:z, 7czl:z, 7d1t:Z, 7d1t:z, 7d1u:Z, 7d1u:z, 6dhe:Z, 6dhe:z, 6dhf:Z, 6dhg:Z, 6dhh:Z, 6dho:Z, 6dhp:Z, 5e79:Z, 5e79:z, 5e7c:Z, 5e7c:z, 7eda:Z, 9evx:Z, 9evx:z, 8ez5:Z, 8f4c:Z, 8f4d:Z, 8f4e:Z, 8f4f:Z, 8f4g:Z, 8f4h:Z, 8f4i:Z, 8f4j:Z, 8f4k:Z, 4fby:Z, 4fby:l, 8gn0:Z, 8gn1:z, 8gn1:Z, 8gn2:Z, 8gn2:z, 5gth:Z, 5gth:z, 5gti:Z, 5gti:z, 5h2f:Z, 5h2f:z, 8ir5:Z, 8ir5:z, 8ir6:Z, 8ir6:z, 8ir7:Z, 8ir7:z, 8ir8:Z, 8ir8:z, 8ir9:Z, 8ir9:z, 8ira:Z, 8ira:z, 8irb:Z, 8irb:z, 8irc:Z, 8irc:z, 8ird:Z, 8ird:z, 8ire:Z, 8ire:z, 8irf:Z, 8irf:z, 8irg:Z, 8irg:z, 8irh:Z, 8irh:z, 8iri:Z, 8iri:z, 4ixq:Z, 4ixq:z, 4ixr:Z, 4ixr:z, 6jlj:Z, 6jlj:z, 6jlk:Z, 6jlk:z, 6jll:Z, 6jll:z, 6jlm:Z, 6jlm:z, 6jln:Z, 6jln:z, 6jlo:Z, 6jlo:z, 6jlp:Z, 6jlp:z, 5kaf:Z, 5kaf:z, 5kai:Z, 5kai:z, 3kzi:Z, 5mx2:Z, 5mx2:z, 7nho:Z, 7nhp:Z, 7nhq:Z, 4pbu:Z, 4pbu:z, 4pj0:Z, 4pj0:z, 7rf1:Z, 7rf2:Z, 7rf3:Z, 7rf4:Z, 7rf4:z, 7rf5:Z, 7rf6:Z, 7rf7:Z, 7rf8:Z, 4rvy:Z, 4rvy:z, 5tis:Z, 4tnh:Z, 4tnh:z, 4tni:Z, 4tni:z, 4tnj:Z, 4tnj:z, 4tnk:Z, 4tnk:z, 4ub6:Z, 4ub6:z, 4ub8:z, 5v2c:Z, 5v2c:z, 4v62:AZ, 4v62:BZ, 4v82:AZ, 4v82:BZ, 6w1o:Z, 6w1p:Z, 6w1q:Z, 6w1q:z, 6w1r:Z, 6w1u:Z, 6w1v:Z, 5ws5:Z, 5ws5:z, 5ws6:Z, 5ws6:z, 3wu2:Z, 3wu2:z, 7yq7:Z, 7yq7:z, 5zzn:Z, 5zzn:z
3 7n8o:Z 60 55 0.3559 0.3500 0.3818 2.44e-08 7n8o:z, 7rcv:Z, 7rcv:z, 8tow:Z, 8tow:z
4 8wql:ZD 60 49 0.3390 0.3333 0.4082 2.36e-06 8wql:ZE, 8wql:Z1
5 7pi5:Z 61 52 0.2712 0.2623 0.3077 2.93e-05 7pi5:z, 7pin:Z, 7pin:Z1, 7pin:z1, 7piw:Z, 7piw:z, 7pnk:Z
6 8xlp:z 61 55 0.2881 0.2787 0.3091 1.12e-04 8xlp:Z
7 8wb4:z 61 52 0.2881 0.2787 0.3269 1.24e-04 8wb4:Z, 8xr6:Z, 8xr6:z
8 7oui:Z 62 56 0.2881 0.2742 0.3036 1.33e-04 3jcu:Z, 3jcu:z, 7oui:z, 5xnl:Z, 5xnl:z, 5xnm:Z, 5xnm:z
9 4yuu:Z2 59 47 0.2373 0.2373 0.2979 0.004 4yuu:z2
10 7y5e:z6 60 52 0.2373 0.2333 0.2692 0.016 7y5e:ZL, 7y7a:Z9, 7y7a:ZE, 7y7a:zO, 7y7a:zZ, 7y7a:Zm
11 6yxy:BH 282 42 0.2373 0.0496 0.3333 0.61 7aoi:BH, 6hiv:BH, 6hix:BH
12 6v0q:A 119 28 0.1864 0.0924 0.3929 1.1 5mq1:A, 6v0q:B, 6v0q:C, 6v0q:D, 6v16:A, 6v16:B, 6v17:A, 6v17:B, 6v1e:A, 6v1f:A, 6v1h:A
13 6c08:F 385 22 0.1695 0.0260 0.4545 1.9
14 5h3h:B 269 46 0.2542 0.0558 0.3261 3.1 5h3h:A
15 8d1u:A 318 37 0.2034 0.0377 0.3243 4.3 5bnm:A, 5bnr:A, 5bns:A, 5bns:B, 1ebl:A, 1ebl:B, 2eft:A, 2eft:B, 2gyo:A, 1hnd:A, 1hnh:A, 1hnj:A, 1mzs:A, 6x7r:A, 4z8d:A, 4z8d:B
16 8k7n:A 307 30 0.1695 0.0326 0.3333 4.4
17 7r50:O 455 37 0.2034 0.0264 0.3243 4.9 7r50:B, 7r50:C, 7r50:F, 7r50:J, 7r50:K
18 7r50:A 473 37 0.2034 0.0254 0.3243 5.2 7r50:D, 7r50:E, 7r50:H, 7r50:I, 7r50:L, 7r50:M, 7r50:N, 7r50:P
19 2p1r:A 290 25 0.2203 0.0448 0.5200 5.3 2p1r:B, 2p1r:C, 2p1r:D
20 7vg3:A 860 21 0.1864 0.0128 0.5238 5.6 7vg2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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