Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER D-I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK D-QUARK DRfold DRfold2 LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred TCRfinder

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA DeepMSA2 FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP Library
>protein
MPYLLISTQIRMEVGPTMVGDEQSDPELMQHLGASKRRALGNNFYEYYVDDPPRIVLDKLERRGFRVLSMTGVGQTLVWC
LH

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7alc:I 85 82 1.0000 0.9647 1.0000 2.47e-58 7al9:A, 7al9:J, 7al9:B, 7al9:I, 7al9:C, 7al9:D, 7al9:E, 7al9:G, 7al9:F, 7al9:H, 7alb:a, 7alb:b, 7alb:c, 7alb:d, 7alb:e, 7alb:f, 7alb:j, 7alb:g, 7alb:h, 7alb:i, 7alb:k, 7alb:l, 7alb:m, 7alb:n, 7alb:o, 7alb:p, 7alb:q, 7alb:r, 7alb:s, 7alb:t, 7alc:F, 7alc:G, 7alc:J, 7alc:H, 1is7:K, 1is7:L, 1is7:M, 1is7:N, 1is7:O, 1is7:P, 1is7:Q, 1is7:R, 1is7:S, 1is7:T, 1is8:K, 1is8:L, 1is8:M, 1is8:N, 1is8:O, 1is8:P, 1is8:Q, 1is8:R, 1is8:S, 1is8:T, 6z80:L, 6z80:K, 6z80:N, 6z80:M, 6z80:O, 6z80:P, 6z80:Q, 6z80:R, 6z80:S, 6z80:T
2 8bd3:B 504 37 0.2073 0.0337 0.4595 0.37 8bd3:b
3 5l4g:K 393 44 0.1585 0.0331 0.2955 2.2 8cvt:D, 5gjq:K, 5gjr:K, 5gjr:y, 5m32:e, 6msb:D, 6msd:D, 6mse:D, 6msg:D, 6msh:D, 6msj:D, 6msk:D, 7qxn:D, 7qxp:D, 7qxu:D, 7qxw:D, 7qxx:D, 7qy7:D, 7qya:D, 7qyb:D, 5t0c:AD, 5t0c:BD, 5t0g:D, 5t0h:D, 5t0i:D, 5t0j:D, 5vfp:D, 5vfq:D, 5vfr:D, 5vfs:D, 7w37:D, 7w38:D, 7w39:D, 7w3a:D, 7w3b:D, 7w3c:D, 7w3f:D, 7w3g:D, 7w3h:D, 7w3i:D, 7w3j:D, 7w3m:D, 6wjd:D, 6wjn:D
4 5xnl:B 503 37 0.1951 0.0318 0.4324 2.3 8c29:B, 8c29:b, 3jcu:B, 3jcu:b, 5mdx:b, 5mdx:B, 7oui:B, 7oui:b, 5xnl:b, 5xnm:B, 5xnm:b, 6yp7:b, 6yp7:B
5 2iw0:A 226 61 0.1951 0.0708 0.2623 3.1
6 5dn6:A 505 56 0.2073 0.0337 0.3036 4.3 5dn6:B, 5dn6:C
7 6uk3:A 475 46 0.1585 0.0274 0.2826 6.6 6uk3:C, 6uk3:B, 6uk3:D
8 7l0o:A 479 33 0.1829 0.0313 0.4545 7.1 7l0o:B, 2woy:A, 2wqs:A, 2wza:A
9 5na8:A 651 33 0.1341 0.0169 0.3333 9.7 5na6:A, 5na7:A, 5na8:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417