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BioLiP Library
>protein
MKKYTCTVCVYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCAVGKDQFEEVEE

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6gps:A 330 54 0.9630 0.1576 0.9630 8.34e-38 6gpx:A
2 4xnw:C 350 54 0.9630 0.1486 0.9630 2.34e-37 4xnv:A, 4xnw:A
3 6bd4:A 379 54 0.9630 0.1372 0.9630 2.99e-37
4 6iiv:A 461 54 0.9630 0.1128 0.9630 3.14e-37 1b13:A, 1b2j:A, 1b2o:A, 1b2o:B, 1be7:A, 1bfy:A, 1c09:A, 1c09:B, 1c09:C, 1fhh:A, 1fhm:A, 6iiu:A, 1irn:A, 1iro:A, 1r0h:A, 4rxn:A, 5rxn:A, 1smm:A, 1smu:A, 1smw:A, 1t9o:A, 1t9o:B, 1t9o:C, 1t9p:A, 1t9p:B, 1t9p:C, 1t9q:A
5 5xpd:A 269 52 0.9259 0.1859 0.9615 5.65e-37
6 5vbl:B 353 54 0.9630 0.1473 0.9630 1.09e-36 6knm:B, 7sus:A
7 6li2:A 347 54 0.9630 0.1499 0.9630 3.19e-36
8 6ln2:A 437 54 0.9630 0.1190 0.9630 1.99e-35 3c59:A, 3c5t:A, 3iol:A, 5otu:A, 5otu:C, 5otv:C, 5otv:A, 5otw:C, 5otw:A, 5otx:A, 5otx:C, 4zgm:A
9 6me8:A 449 53 0.9444 0.1136 0.9623 3.51e-35 6me6:A, 6me7:A, 6me9:A
10 7f1t:A 423 54 0.9444 0.1206 0.9444 1.09e-33 6akx:A, 6akx:B, 6aky:A, 5d65:B, 5d65:A, 5d65:D, 4mbs:A, 4mbs:B, 5uiw:A
11 2pve:A 52 52 0.7963 0.8269 0.8269 7.34e-28 2pve:B, 2pve:C
12 2pvx:B 54 54 0.6852 0.6852 0.6852 1.20e-24 2pvx:A, 2pvx:C, 2pvx:D, 2pvx:E, 2pvx:F, 2pvx:G, 2pvx:H
13 1yk5:A 53 53 0.5741 0.5849 0.5849 4.38e-21 2pya:A, 1yk4:A, 1yk5:B, 1yk5:C, 1yk5:D
14 2kkd:A 52 52 0.6111 0.6346 0.6346 1.63e-20 2ql0:A, 1rb9:A, 1rdv:A, 2rdv:A, 2rdv:B, 2rdv:C, 7rxn:A, 8rxn:A
15 5ai2:A 54 54 0.5370 0.5370 0.5370 1.06e-19 5ai3:A, 4ar3:A, 4ar4:A, 4ar5:A, 4ar6:A, 9bkl:A, 9bkp:A, 9bkt:A, 1bq8:A, 1bq9:A, 1brf:A, 1caa:A, 1cad:A, 1iu5:A, 1iu6:A, 4k9f:A, 3kyu:A, 3kyv:A, 3kyw:A, 3kyx:A, 3kyy:A, 5nw3:A, 5ome:A, 3ryg:A, 3rz6:A, 3rzt:A, 3ss2:A, 1vcx:A, 1zrp:A
16 2dsx:A 52 51 0.5556 0.5769 0.5882 5.99e-19 1rdg:A
17 7e0l:A 491 48 0.5741 0.0631 0.6458 1.08e-18 7e0l:B, 7e0l:K, 7e0l:M, 7wsx:A, 7wsx:B
18 2v3b:B 53 53 0.5000 0.5094 0.5094 8.73e-15
19 2ms3:A 57 50 0.4259 0.4035 0.4600 1.18e-13
20 1dx8:A 70 52 0.4444 0.3429 0.4615 8.52e-13 1h7v:A
21 8f6t:A 428 42 0.4259 0.0537 0.5476 2.64e-11
22 1s24:A 56 52 0.4444 0.4286 0.4615 2.88e-11
23 2kn9:A 81 52 0.4259 0.2840 0.4423 1.20e-10 7a9a:A, 7a9a:B, 7a9a:C, 7a9a:D, 7a9a:E, 7a9a:F, 7a9a:G, 7a9a:H
24 8ito:B 74 44 0.3704 0.2703 0.4545 7.10e-10 8ito:A
25 6rxn:A 45 50 0.4259 0.5111 0.4600 1.09e-09
26 3i74:A 642 36 0.2037 0.0171 0.3056 0.31 3i74:B
27 4jdz:B 445 58 0.3519 0.0427 0.3276 0.42 4jdz:A, 4je0:A
28 2d1g:A 481 32 0.2222 0.0249 0.3750 0.51 2d1g:B
29 8vdk:A 432 58 0.3519 0.0440 0.3276 0.64
30 8ewg:A 1017 22 0.2037 0.0108 0.5000 0.98
31 8ouw:2 701 48 0.2963 0.0228 0.3333 1.0
32 3fhz:D 166 15 0.1852 0.0602 0.6667 1.1 3cag:A, 3cag:C, 3cag:E, 3cag:B, 3cag:D, 3cag:F, 3ere:D, 3fhz:C, 3fhz:E, 3fhz:B, 3fhz:F, 3fhz:A, 3laj:C, 3laj:E, 3laj:B, 3laj:F, 3laj:A, 3laj:D, 3lap:C, 3lap:E, 3lap:B, 3lap:F, 3lap:A, 3lap:D, 2zfz:A, 2zfz:C, 2zfz:F, 2zfz:B, 2zfz:D, 2zfz:E
33 6asb:I 121 37 0.2593 0.1157 0.3784 1.2 6asb:C, 6asb:L
34 8b37:B 681 13 0.1481 0.0117 0.6154 1.2 8b37:A
35 3s6h:A 436 24 0.2222 0.0275 0.5000 1.6 4kzt:A, 4kzt:B, 4kzt:X, 4kzt:Y, 3s6g:B, 3s6g:Y, 3s6h:X, 3s6h:B, 3s6h:Y
36 8fac:A 1377 24 0.1667 0.0065 0.3750 3.8 8e04:A
37 8e05:A 1749 24 0.1667 0.0051 0.3750 3.8 8e05:B, 8e06:A
38 7mex:A 1737 13 0.1111 0.0035 0.4615 3.9 6kgi:B, 7mey:A, 3nih:A, 3nii:A, 3nij:A, 3nik:B, 3nik:D, 3nik:A, 3nik:F, 3nil:D, 3nil:A, 3nil:B, 3nil:F, 3nim:B, 3nim:F, 3nim:A, 3nim:D, 3nin:A, 3nin:B, 3nis:A, 3nis:B, 3nis:D, 3nis:F, 3nit:A
39 7ybu:A 670 33 0.1852 0.0149 0.3030 3.9 7ybu:B, 7ybu:D, 7ybu:F, 7ybu:H, 7ybu:J
40 7w1y:2 706 42 0.2222 0.0170 0.2857 4.3 7pfo:2, 7plo:2, 8q6o:A, 8q6o:2, 8q6p:2, 7w1y:A, 6xtx:2, 6xty:2
41 5ui3:C 306 17 0.1667 0.0294 0.5294 5.8 5ui3:D, 5ui3:A, 5ui3:B
42 6rax:2 605 40 0.2037 0.0182 0.2750 7.9 6raw:2, 6ray:2
43 3ik2:A 512 39 0.2593 0.0273 0.3590 7.9
44 6xn8:A 540 30 0.2222 0.0222 0.4000 9.0 6xn8:B
45 3q9t:A 577 43 0.2222 0.0208 0.2791 9.4 3q9t:B, 3q9t:C, 5zu2:A, 5zu2:B, 5zu2:C, 5zu3:A, 5zu3:B, 5zu3:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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