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BioLiP Library
>protein
GPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRLDP

The query sequence (length=36) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ltv:A 36 36 1.0000 1.0000 1.0000 2.54e-22 2law:A
2 6jjz:B 96 33 0.6389 0.2396 0.6970 9.88e-13 6jjz:A, 6kkg:A, 6kkg:B
3 6jjz:B 96 33 0.3333 0.1250 0.3636 0.67 6jjz:A, 6kkg:A, 6kkg:B
4 6jjy:A 128 32 0.5833 0.1641 0.6562 2.55e-12 6j68:A, 6j68:B, 6j69:A, 6jjw:A, 6jjx:B, 6jjx:A
5 6jjy:A 128 32 0.4167 0.1172 0.4688 0.009 6j68:A, 6j68:B, 6j69:A, 6jjw:A, 6jjx:B, 6jjx:A
6 2lb1:A 35 34 0.5278 0.5429 0.5588 6.47e-10 2ltx:A
7 2djy:A 42 35 0.5000 0.4286 0.5143 1.66e-09
8 1i5h:W 50 34 0.5000 0.3600 0.5294 2.74e-09
9 4lcd:A 419 34 0.5000 0.0430 0.5294 3.82e-09 4lcd:B
10 2kxq:A 90 35 0.5000 0.2000 0.5143 7.80e-09 2laz:A, 2lb0:A, 2ltz:A
11 2kxq:A 90 32 0.3611 0.1444 0.4062 6.31e-06 2laz:A, 2lb0:A, 2ltz:A
12 5dws:C 40 33 0.4444 0.4000 0.4848 9.98e-09
13 1jmq:A 46 32 0.5000 0.3913 0.5625 1.68e-08 1k5r:A, 1k9q:A, 1k9r:A, 2lax:A, 2lay:A, 2ltw:A
14 5cq2:A 76 33 0.4444 0.2105 0.4848 2.12e-08 5dws:A, 5dws:E, 5dws:G, 5dzd:A, 5dzd:B, 2jo9:A, 4rof:A, 4rof:B
15 5cq2:A 76 32 0.4444 0.2105 0.5000 9.79e-08 5dws:A, 5dws:E, 5dws:G, 5dzd:A, 5dzd:B, 2jo9:A, 4rof:A, 4rof:B
16 7lp3:A 37 33 0.4722 0.4595 0.5152 9.72e-08 7lp3:C
17 7lp2:E 37 30 0.4167 0.4054 0.5000 3.92e-07 2lb2:A, 7lp2:A, 7lp2:C, 2lty:A
18 2m3o:W 43 34 0.4722 0.3953 0.5000 4.89e-07 2kpz:A, 2kq0:A, 2mpt:A, 4n7h:A
19 2jmf:A 43 33 0.4167 0.3488 0.4545 1.20e-06
20 2laj:A 40 32 0.4167 0.3750 0.4688 2.03e-06
21 2ez5:W 46 32 0.3333 0.2609 0.3750 9.00e-06
22 2n8t:A 39 32 0.3889 0.3590 0.4375 1.44e-05
23 1eg4:A 260 28 0.3333 0.0462 0.4286 4.21e-04
24 2nc3:A 33 30 0.3333 0.3636 0.4000 4.38e-04 2nc4:A, 2nc5:A, 2nc6:A
25 8sg2:A 163 31 0.3611 0.0798 0.4194 0.001 6dun:A, 6dun:B, 7efj:A, 7efx:A, 7ekv:A, 7f0m:A, 7f0m:C, 7f0m:B, 7f0m:D, 1f8a:B, 4gwv:A, 3i6c:A, 3i6c:B, 1i8g:B, 1i8h:B, 3ikd:A, 3ikd:B, 3ikg:A, 3ikg:B, 9inr:A, 9inr:B, 2itk:A, 3jyj:A, 3jyj:B, 3kab:A, 3kac:A, 3kac:B, 3kad:A, 3kaf:A, 3kag:A, 3kah:A, 3kai:A, 3kce:A, 2lb3:A, 2n1o:A, 1nmw:A, 3ntp:A, 6o33:A, 6o34:A, 3odk:A, 3oob:A, 1pin:A, 2q5a:A, 3tc5:A, 3tcz:A, 3tdb:A, 4tns:A, 4tyo:A, 4tyo:B, 5uy9:A, 6vaj:A, 3wh0:A, 2xp3:A, 2xp4:A, 2xp5:A, 2xp6:A, 2xp7:A, 2xp8:A, 2xp9:A, 2xpa:A, 2xpb:A
26 6zmb:C 200 23 0.3056 0.0550 0.4783 0.034 8afj:B, 8afj:A, 2itb:A, 2itb:B, 6zma:B, 6zma:C, 6zmb:B, 6zmc:B, 6zmc:C
27 2jup:W 37 27 0.2500 0.2432 0.3333 0.49 2rly:W, 2rm0:W
28 8fhc:B 215 21 0.2778 0.0465 0.4762 1.2 8fhc:A
29 7kq5:A 265 26 0.2500 0.0340 0.3462 2.0 3dkt:A, 3dkt:B, 3dkt:C, 3dkt:D, 3dkt:E, 3dkt:F, 3dkt:G, 3dkt:H, 3dkt:I, 3dkt:J, 7lik:A, 7lis:A, 7lit:A, 7mu1:A, 6wkv:A, 6wkv:f, 6wkv:B, 6wkv:Q, 6wkv:C, 6wkv:I, 6wkv:D, 6wkv:H, 6wkv:s, 6wkv:E, 6wkv:v, 6wkv:F, 6wkv:W, 6wkv:G, 6wkv:V, 6wkv:o, 6wkv:P, 6wkv:J, 6wkv:3, 6wkv:M, 6wkv:Z, 6wkv:S, 6wkv:N, 6wkv:i, 6wkv:O, 6wkv:l, 6wkv:e, 6wkv:R, 6wkv:T, 6wkv:p, 6wkv:2, 6wkv:X, 6wkv:8, 6wkv:Y, 6wkv:b, 6wkv:0, 6wkv:4, 6wkv:L, 6wkv:1, 6wkv:5, 6wkv:k, 6wkv:K, 6wkv:6, 6wkv:c, 6wkv:7, 6wkv:U, 6wkv:a, 6wkv:9, 6wkv:q, 6wkv:j, 6wkv:d, 6wkv:x, 6wkv:u, 6wkv:h, 6wkv:m, 6wkv:t, 6wkv:g, 6wkv:n, 6wkv:w, 6wkv:r
30 8pxx:A 99 26 0.2500 0.0909 0.3462 2.4 2dyf:A
31 8pxx:A 99 27 0.2222 0.0808 0.2963 3.1 2dyf:A
32 2kt4:B 157 36 0.3611 0.0828 0.3611 2.7 2lbv:A
33 1otw:A 255 19 0.1944 0.0275 0.3684 4.7 3hlx:A, 3hlx:D, 3hml:A, 3hml:B, 3hnh:A, 4ny7:A, 4ny7:B, 1otw:B
34 8j4u:P 559 32 0.2500 0.0161 0.2812 5.9 8j4u:Q, 8su9:P, 8su9:Q, 8sub:P, 8sub:Q, 8uae:P, 8uae:Q, 8uaf:P, 8uaf:Q
35 8j4u:O 585 32 0.2500 0.0154 0.2812 5.9 8j4u:M, 8j4u:N, 8su9:M, 8su9:N, 8su9:O, 8sub:M, 8sub:N, 8sub:O, 8suw:M, 8suw:N, 8suw:O, 8uae:M, 8uae:N, 8uae:O, 8uaf:M, 8uaf:N, 8uaf:O
36 8b5q:B 365 35 0.3056 0.0301 0.3143 6.0 8b5q:A, 8b5s:A, 8b5s:B, 8b62:A, 8b62:B, 8b63:A, 8b63:B
37 8t19:A 86 30 0.3333 0.1395 0.4000 6.3
38 8cip:A 665 11 0.1944 0.0105 0.6364 8.7 8cip:B, 8cip:C, 8cip:D
39 5nx7:A 308 23 0.2778 0.0325 0.4348 9.0 5nx6:A, 5nx6:B, 5nx7:B
40 6quz:D 574 14 0.1944 0.0122 0.5000 9.5 6quz:B, 6qv0:B, 6qv0:D, 6qv1:B, 6qv1:D, 6qv2:B, 6qv2:D
41 2ch6:A 343 18 0.1944 0.0204 0.3889 9.8 2ch6:B, 2ch6:C, 2ch6:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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