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BioLiP Library
Download all results in tab-seperated text for 1404 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 3znl:E (2.5) BS01 SIA ? GO:0019031 ... Q6DQ34 24036174
    402 3znm:A (2.4) BS01 SIA ? GO:0019031 ... Q6DQ34 24036174
    403 3znm:C (2.4) BS01 SIA ? GO:0019031 ... Q6DQ34 24036174
    404 3znm:E (2.4) BS01 SIA ? GO:0019031 ... Q6DQ34 24036174
    405 3zp0:E (2.51) BS01 SIA ? GO:0019031 ... Q6DQ34 24050651
    406 3zp1:E (2.6) BS01 SIA ? GO:0019031 ... Q6DQ34 24050651
    407 3zp2:E (2.5) BS01 SIA ? GO:0019031 ... Q6DQ34 24050651
    408 3zp3:E (2.65) BS01 SIA ? GO:0019031 ... Q6DQ34 24050651
    409 3zp6:E (2.6) BS01 SIA ? GO:0019031 ... Q6DQ34 24050651
    410 3zpb:E (2.6) BS01 SIA ? GO:0019031 ... Q6DQ34 24050651
    411 4avv:B (1.6) BS02 SIA ? GO:0001849 ... P02743 25084341
    412 4avv:E (1.6) BS01 SIA ? GO:0001849 ... P02743 25084341
    413 4bgx:A (2.48) BS01 SIA ? GO:0019031 ... Q6DQ34 23615615 PDBbind: -logKd/Ki=1.77, Kd=17mM
    414 4bgy:A (2.68) BS01 SIA ? GO:0019031 ... Q6DQ34 23615615 PDBbind: -logKd/Ki=2.96, Kd=1.1mM
    415 4bh0:A (2.36) BS02 SIA ? GO:0019031 ... Q207Z6 23615615
    416 4bh0:C (2.36) BS02 SIA ? GO:0019031 ... Q207Z6 23615615
    417 4bh0:E (2.36) BS02 SIA ? GO:0019031 ... Q207Z6 23615615
    418 4bh1:A (2.15) BS01 SIA ? GO:0019031 ... Q207Z6 23615615
    419 4bh1:C (2.15) BS01 SIA ? GO:0019031 ... Q207Z6 23615615
    420 4bh1:E (2.15) BS01 SIA ? GO:0019031 ... Q207Z6 23615615
    421 4bh3:A (2.0) BS01 SIA ? GO:0019031 ... Q5EP31 23615615 PDBbind: -logKd/Ki=1.92, Kd=12mM
    422 4bh4:A (1.9) BS01 SIA ? GO:0019031 ... Q5EP31 23615615 PDBbind: -logKd/Ki=1.49, Kd=32mM
    423 4bsb:A (2.35) BS01 SIA ? GO:0019031 ... M4YV75 23787694
    424 4bsc:A (2.55) BS01 SIA ? GO:0019031 ... M4YV75 23787694
    425 4bsd:A (2.4) BS01 SIA ? GO:0019031 ... M4YV75 23787694
    426 4bse:A (2.55) BS01 SIA ? GO:0019031 ... M4YV75 23787694
    427 4bsf:A (2.76) BS01 SIA ? GO:0019031 ... M4YV75 23787694
    428 4bsh:A (2.25) BS01 SIA ? GO:0019031 ... Q6GYW3 23787694
    429 4bsi:A (2.62) BS02 SIA ? GO:0019031 ... G0KQM4 23787694
    430 4c1w:A (1.84) BS01 SIA 3.2.1.18 GO:0004308 ... Q4LB86 24733924
    431 4c1x:A (1.84) BS01 SIA 3.2.1.18 GO:0004308 ... P62575 26289431
    432 4caj:A (2.191) BS02 SIA ? N/A Q8CJ91 25450767
    433 4caj:B (2.191) BS02 SIA ? N/A Q8CJ91 25450767
    434 4caj:C (2.191) BS02 SIA ? N/A Q8CJ91 25450767
    435 4cqq:A (2.55) BS01 SIA ? GO:0019031 ... Q6DQ34 24889237
    436 4cqr:A (2.45) BS01 SIA ? GO:0019031 ... Q6DQ34 24889237
    437 4cqu:A (2.48) BS01 SIA ? GO:0019031 ... Q6DQ34 24889237
    438 4cqw:A (2.3) BS01 SIA ? GO:0019031 ... Q207Z6 24889237
    439 4cqw:C (2.3) BS01 SIA ? GO:0019031 ... Q207Z6 24889237
    440 4cqw:E (2.3) BS01 SIA ? GO:0019031 ... Q207Z6 24889237
    441 4cqx:A (2.3) BS01 SIA ? GO:0019031 ... Q207Z6 24889237
    442 4cqx:C (2.3) BS02 SIA ? GO:0019031 ... Q207Z6 24889237
    443 4cqx:E (2.3) BS02 SIA ? GO:0019031 ... Q207Z6 24889237
    444 4cqy:A (2.05) BS01 SIA ? GO:0019031 ... Q207Z6 24889237
    445 4cqy:C (2.05) BS01 SIA ? GO:0019031 ... Q207Z6 24889237
    446 4cqy:E (2.05) BS01 SIA ? GO:0019031 ... Q207Z6 24889237
    447 4cqz:A (2.7) BS01 SIA ? GO:0019031 ... Q6DQ34 24889237
    448 4csy:B (2.41) BS02 SIA ? GO:0007155 ... P16581 26117840
    449 4cyw:A (2.6) BS02 SIA ? GO:0019031 ... E0YNJ7 24870229
    450 4cyw:C (2.6) BS02 SIA ? GO:0019031 ... E0YNJ7 24870229
    451 4cyw:E (2.6) BS02 SIA ? GO:0019031 ... E0YNJ7 24870229
    452 4cyz:A (2.4) BS01 SIA ? GO:0019031 ... E0YNJ7 24870229
    453 4cyz:E (2.4) BS01 SIA ? GO:0019031 ... E0YNJ7 24870229
    454 4cz0:A (3.2) BS01 SIA ? GO:0019031 ... E0YNJ7 24870229
    455 4cz0:C (3.2) BS01 SIA ? GO:0019031 ... E0YNJ7 24870229
    456 4cz0:E (3.2) BS01 SIA ? GO:0019031 ... E0YNJ7 24870229
    457 4d00:A (2.5) BS02 SIA ? GO:0019031 ... Q0A448 24870229
    458 4d00:C (2.5) BS01 SIA ? GO:0019031 ... Q0A448 24870229
    459 4d00:E (2.5) BS01 SIA ? GO:0019031 ... Q0A448 24870229
    460 4d62:A (2.5) BS01 SIA N/A N/A N/A 26418008 MOAD: Kd=3.64mM
    PDBbind: -logKd/Ki=2.44, Kd=3.64mM
    461 4d63:A (2.2) BS01 SIA N/A N/A N/A 26418008 MOAD: Kd~7mM
    PDBbind: -logKd/Ki=1.64, Kd~23mM
    462 4dj7:A (2.81) BS02 SIA ? GO:0019031 ... Q6VMK1 22674977 PDBbind: -logKd/Ki=6.30, Kd=0.5uM
    463 4dj7:C (2.81) BS01 SIA ? GO:0019031 ... Q6VMK1 22674977
    464 4dj7:E (2.81) BS02 SIA ? GO:0019031 ... Q6VMK1 22674977
    465 4dj8:A (2.8) BS01 SIA ? GO:0019031 ... Q6VMK1 22674977
    466 4dj8:C (2.8) BS01 SIA ? GO:0019031 ... Q6VMK1 22674977
    467 4dj8:E (2.8) BS01 SIA ? GO:0019031 ... Q6VMK1 22674977
    468 4dqo:H (2.438) BS02 SIA N/A N/A N/A 23708607
    469 4dqo:L (2.438) BS02 SIA N/A N/A N/A 23708607
    470 4dxg:A (2.5) BS02 SIA ? GO:0005576 ... A0A0H3K6A3 22949551 PDBbind: -logKd/Ki=7.06, Kd=87.0nM
    471 4en6:B (2.56) BS02 SIA ? GO:0005576 ... P46085 22684008
    472 4en7:B (2.68) BS02 SIA ? GO:0005576 ... P46085 22684008
    473 4en8:B (2.6) BS01 SIA ? GO:0005576 ... P46085 22684008
    474 4en9:B (2.64) BS01 SIA ? GO:0005576 ... P46085 22684008
    475 4fmh:B (1.85) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    476 4fmh:H (1.85) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    477 4fmh:K (1.85) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    478 4fmh:M (1.85) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    479 4fmh:O (1.85) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    480 4fmh:Q (1.85) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    481 4fmh:T (1.85) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    482 4fmi:A (2.0) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    483 4fmi:E (2.0) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    484 4fmi:M (2.0) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    485 4fmi:T (2.0) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    486 4fmj:H (2.4) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    487 4fmj:K (2.4) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    488 4fmj:M (2.4) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    489 4fmj:O (2.4) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    490 4fmj:Q (2.4) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    491 4fmj:S (2.4) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    492 4fmj:T (2.4) BS01 SIA ? GO:0005198 ... C0JPK1 22910713
    493 4fvv:B (2.7) BS01 SIA ? GO:0005576 ... Q9LBR1 23027864
    494 4gu3:A (3.6) BS01 SIA ? GO:0007155 ... P04506 23236285
    495 4gu3:B (3.6) BS01 SIA ? GO:0007155 ... P04506 23236285
    496 4gu3:C (3.6) BS01 SIA ? GO:0007155 ... P04506 23236285
    497 4gu4:A (3.5) BS01 SIA ? GO:0007155 ... P04506 23236285
    498 4gu4:B (3.5) BS01 SIA ? GO:0007155 ... P04506 23236285
    499 4gu4:C (3.5) BS01 SIA ? GO:0007155 ... P04506 23236285
    500 4gzq:A (2.2) BS01 SIA 3.2.1.18 GO:0004308 ... K7N5N3 23015718
    501 4gzw:A (2.45) BS01 SIA 3.2.1.18 GO:0004308 ... K7N5N3 23015718 PDBbind: -logKd/Ki=4.52, Kd=30.0uM
    502 4gzw:B (2.45) BS01 SIA 3.2.1.18 GO:0004308 ... K7N5N3 23015718
    503 4gzw:C (2.45) BS02 SIA 3.2.1.18 GO:0004308 ... K7N5N3 23015718
    504 4gzw:D (2.45) BS02 SIA 3.2.1.18 GO:0004308 ... K7N5N3 23015718
    505 4gzx:A (2.45) BS01 SIA 3.2.1.18 GO:0004308 ... K7N5N3 23015718 PDBbind: -logKd/Ki=3.19, Kd=645uM
    506 4gzx:B (2.45) BS02 SIA 3.2.1.18 GO:0004308 ... K7N5N3 23015718
    507 4gzx:C (2.45) BS02 SIA 3.2.1.18 GO:0004308 ... K7N5N3 23015718
    508 4gzx:D (2.45) BS02 SIA 3.2.1.18 GO:0004308 ... K7N5N3 23015718
    509 4h53:A (1.5) BS01 SIA 3.2.1.18 GO:0004308 ... Q194T1 23422659
    510 4h53:B (1.5) BS03 SIA 3.2.1.18 GO:0004308 ... Q194T1 23422659
    511 4h53:C (1.5) BS01 SIA 3.2.1.18 GO:0004308 ... Q194T1 23422659
    512 4hiz:A (1.601) BS02 SIA 3.2.1.129 GO:0016996 ... I7HXG2 N/A
    513 4hiz:B (1.601) BS02 SIA 3.2.1.129 GO:0016996 ... I7HXG2 N/A
    514 4hiz:C (1.601) BS02 SIA 3.2.1.129 GO:0016996 ... I7HXG2 N/A
    515 4hmg:A (3.0) BS01 SIA ? GO:0019031 ... P03437 2329580
    516 4hmg:C (3.0) BS01 SIA ? GO:0019031 ... P03437 2329580
    517 4hmg:E (3.0) BS01 SIA ? GO:0019031 ... P03437 2329580
    518 4jcf:C (2.2) BS01 SIA ? GO:0005198 ... P03089 23760462
    519 4jno:A (3.0) BS01 SIA ? GO:0016020 ... Q8WS31 23508963
    520 4jno:A (3.0) BS02 SIA ? GO:0016020 ... Q8WS31 23508963
    521 4jtv:A (2.997) BS01 SIA ? GO:0019031 ... C3W5S1 23514882
    522 4jtv:C (2.997) BS02 SIA ? GO:0019031 ... C3W5S1 23514882
    523 4jtv:E (2.997) BS01 SIA ? GO:0019031 ... C3W5S1 23514882
    524 4jtv:G (2.997) BS01 SIA ? GO:0019031 ... C3W5S1 23514882
    525 4jtv:I (2.997) BS01 SIA ? GO:0019031 ... C3W5S1 23514882
    526 4jtv:K (2.997) BS01 SIA ? GO:0019031 ... C3W5S1 23514882
    527 4ju0:A (2.908) BS01 SIA ? GO:0019031 ... C3W5S1 23514882
    528 4ju0:C (2.908) BS02 SIA ? GO:0019031 ... C3W5S1 23514882
    529 4ju0:E (2.908) BS02 SIA ? GO:0019031 ... C3W5S1 23514882
    530 4ju0:G (2.908) BS01 SIA ? GO:0019031 ... C3W5S1 23514882
    531 4ju0:I (2.908) BS02 SIA ? GO:0019031 ... C3W5S1 23514882
    532 4ju0:K (2.908) BS01 SIA ? GO:0019031 ... C3W5S1 23514882
    533 4juh:A (2.805) BS01 SIA ? GO:0019031 ... Q9WFX3 23514882
    534 4juj:A (3.013) BS01 SIA ? GO:0019031 ... Q9WFX3 23514882
    535 4juj:C (3.013) BS01 SIA ? GO:0019031 ... Q9WFX3 23514882
    536 4k63:A (3.1) BS01 SIA ? GO:0019031 ... A8HWY8 23641058 PDBbind: -logKd/Ki=4.22, Kd=60uM
    537 4k63:C (3.1) BS01 SIA ? GO:0019031 ... A8HWY8 23641058
    538 4k63:E (3.1) BS01 SIA ? GO:0019031 ... A8HWY8 23641058
    539 4k63:G (3.1) BS01 SIA ? GO:0019031 ... A8HWY8 23641058
    540 4k64:A (2.604) BS01 SIA ? GO:0019031 ... A8HWY8 23641058 PDBbind: -logKd/Ki=3.00, Kd>1mM
    541 4k64:C (2.604) BS01 SIA ? GO:0019031 ... A8HWY8 23641058
    542 4k66:A (3.005) BS01 SIA ? GO:0019031 ... A8HWY8 23641058 PDBbind: -logKd/Ki=3.26, Kd=554uM
    543 4k66:C (3.005) BS01 SIA ? GO:0019031 ... A8HWY8 23641058
    544 4k67:A (2.7) BS01 SIA ? GO:0019031 ... A8HWY8 23641058 PDBbind: -logKd/Ki=3.43, Kd=372uM
    545 4k67:C (2.7) BS01 SIA ? GO:0019031 ... A8HWY8 23641058
    546 4k67:E (2.7) BS01 SIA ? GO:0019031 ... A8HWY8 23641058
    547 4k67:G (2.7) BS01 SIA ? GO:0019031 ... A8HWY8 23641058
    548 4k6t:A (2.0) BS01 SIA ? GO:0007155 ... Q64823 26177934 PDBbind: -logKd/Ki=4.10, Kd=78.6uM
    549 4k6t:A (2.0) BS02 SIA ? GO:0007155 ... Q64823 26177934 PDBbind: -logKd/Ki=4.10, Kd=78.6uM
    550 4k6t:B (2.0) BS01 SIA ? GO:0007155 ... Q64823 26177934 PDBbind: -logKd/Ki=4.10, Kd=78.6uM
    551 4k6t:C (2.0) BS01 SIA ? GO:0007155 ... Q64823 26177934 PDBbind: -logKd/Ki=4.10, Kd=78.6uM
    552 4k6t:E (2.0) BS02 SIA ? GO:0007155 ... Q64823 26177934
    553 4k6t:F (2.0) BS01 SIA ? GO:0007155 ... Q64823 26177934
    554 4k6t:F (2.0) BS03 SIA ? GO:0007155 ... Q64823 26177934
    555 4k6t:G (2.0) BS01 SIA ? GO:0007155 ... Q64823 26177934
    556 4k6t:G (2.0) BS02 SIA ? GO:0007155 ... Q64823 26177934
    557 4k6u:A (1.9) BS02 SIA ? GO:0007155 ... Q64823 26177934 PDBbind: -logKd/Ki=4.14, Kd=72.8uM
    558 4k6u:B (1.9) BS01 SIA ? GO:0007155 ... Q64823 26177934 PDBbind: -logKd/Ki=4.14, Kd=72.8uM
    559 4k6u:B (1.9) BS03 SIA ? GO:0007155 ... Q64823 26177934 PDBbind: -logKd/Ki=4.14, Kd=72.8uM
    560 4k6u:C (1.9) BS01 SIA ? GO:0007155 ... Q64823 26177934 PDBbind: -logKd/Ki=4.14, Kd=72.8uM
    561 4kbb:A (2.3) BS03 SIA 3.4.24.69 GO:0005576 ... P10844 23807078
    562 4kbb:B (2.3) BS05 SIA 3.4.24.69 GO:0005576 ... P10844 23807078
    563 4kdn:A (2.483) BS01 SIA ? GO:0019031 ... Q6DQ33 23794001
    564 4kdn:C (2.483) BS01 SIA ? GO:0019031 ... Q6DQ33 23794001
    565 4kdo:A (2.396) BS01 SIA ? GO:0019031 ... Q6DQ33 23794001
    566 4kdo:C (2.396) BS01 SIA ? GO:0019031 ... Q6DQ33 23794001
    567 4kom:A (2.604) BS01 SIA ? GO:0005886 ... V5IRU4 24009358 PDBbind: -logKd/Ki=7.00, Kd=0.10uM
    568 4kon:A (2.6) BS01 SIA ? GO:0005886 ... V5IRU4 24009358 PDBbind: -logKd/Ki=6.48, Kd=0.33uM
    569 4kps:A (2.587) BS01 SIA ? GO:0019031 ... P13103 23760233
    570 4kps:E (2.587) BS01 SIA ? GO:0019031 ... P13103 23760233
    571 4l6t:B (1.859) BS02 SIA ? GO:0005576 ... Q8GAV3 24095060 PDBbind: -logKd/Ki=7.49, Kd=32nM
    572 4l6t:C (1.859) BS02 SIA ? GO:0005576 ... Q8GAV3 24095060 PDBbind: -logKd/Ki=7.49, Kd=32nM
    573 4l6t:D (1.859) BS01 SIA ? GO:0005576 ... Q8GAV3 24095060
    574 4l6t:D (1.859) BS03 SIA ? GO:0005576 ... Q8GAV3 24095060
    575 4l6t:E (1.859) BS02 SIA ? GO:0005576 ... Q8GAV3 24095060
    576 4l6t:F (1.859) BS02 SIA ? GO:0005576 ... Q8GAV3 24095060
    577 4lkg:A (2.994) BS02 SIA ? GO:0005886 ... V5IRV0 24009358 PDBbind: -logKd/Ki=6.80, Kd=0.16uM
    578 4lkg:C (2.994) BS01 SIA ? GO:0005886 ... V5IRV0 24009358
    579 4lkg:E (2.994) BS01 SIA ? GO:0005886 ... V5IRV0 24009358
    580 4lkh:A (3.099) BS01 SIA ? GO:0005886 ... V5IRV0 24009358 PDBbind: -logKd/Ki=3.00, Kd>1.0mM
    581 4lkj:A (2.798) BS01 SIA ? GO:0005886 ... V5IRV5 24009358 PDBbind: -logKd/Ki=6.70, Kd=0.20uM
    582 4lkk:A (2.491) BS02 SIA ? GO:0005886 ... V5IRV5 24009358 PDBbind: -logKd/Ki=5.92, Kd=1.20uM
    583 4ln8:A (2.5) BS01 SIA ? GO:0019031 ... R4NN21 24027325
    584 4ln8:C (2.5) BS01 SIA ? GO:0019031 ... R4NN21 24027325
    585 4ln8:E (2.5) BS01 SIA ? GO:0019031 ... R4NN21 24027325
    586 4ln8:G (2.5) BS01 SIA ? GO:0019031 ... R4NN21 24027325
    587 4ln8:I (2.5) BS01 SIA ? GO:0019031 ... R4NN21 24027325
    588 4ln8:K (2.5) BS01 SIA ? GO:0019031 ... R4NN21 24027325
    589 4lo5:B (2.7) BS01 SIA ? GO:0005576 ... Q8KHU9 24130488
    590 4lo6:B (2.3) BS01 SIA ? GO:0005576 ... Q8KHU9 24130488
    591 4m44:A (2.5) BS01 SIA ? GO:0019031 ... A3DQM7 24074573
    592 4m44:C (2.5) BS01 SIA ? GO:0019031 ... A3DQM7 24074573
    593 4m44:E (2.5) BS01 SIA ? GO:0019031 ... A3DQM7 24074573
    594 4mby:A (1.48) BS01 SIA ? GO:0005198 ... P04010 24204265
    595 4mby:B (1.48) BS02 SIA ? GO:0005198 ... P04010 24204265
    596 4mby:C (1.48) BS02 SIA ? GO:0005198 ... P04010 24204265
    597 4mby:D (1.48) BS02 SIA ? GO:0005198 ... P04010 24204265
    598 4mby:E (1.48) BS02 SIA ? GO:0005198 ... P04010 24204265
    599 4mby:G (1.48) BS01 SIA ? GO:0005198 ... P04010 24204265
    600 4mby:H (1.48) BS01 SIA ? GO:0005198 ... P04010 24204265
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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