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BioLiP Library
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ln1:A (2.4) BS01 DLP ? GO:0005515 ... Q9UKL6 12055623
    2 1ln2:A (2.9) BS01 DLP ? GO:0005515 ... Q9UKL6 12055623
    3 1ln2:B (2.9) BS01 DLP ? GO:0005515 ... Q9UKL6 12055623
    4 4ews:A (2.59) BS04 DLP ? GO:0005548 ... P11597 22961980
    5 7dce:X (3.8) BS01 DLP ? GO:0002513 ... Q9H6D3 34625749
    6 7niv:A (3.6) BS01 DLP 7.6.2.1 GO:0005515 ... P21439 34385322
    7 7niw:A (3.8) BS05 DLP 7.6.2.1 GO:0005515 ... P21439 34385322
    8 7qp9:A (2.89) BS01 DLP ? GO:0005783 ... Q9LFP6 35768502
    9 7qp9:A (2.89) BS02 DLP ? GO:0005783 ... Q9LFP6 35768502
    10 7qp9:A (2.89) BS03 DLP ? GO:0005783 ... Q9LFP6 35768502
    11 7qp9:B (2.89) BS01 DLP ? GO:0005783 ... Q9LFP6 35768502
    12 7qp9:B (2.89) BS02 DLP ? GO:0005783 ... Q9LFP6 35768502
    13 7qp9:B (2.89) BS03 DLP ? GO:0005783 ... Q9LFP6 35768502
    14 7qpa:A (3.18) BS02 DLP ? GO:0005783 ... Q9LFP6 35768502
    15 7qpa:B (3.18) BS01 DLP ? GO:0005783 ... Q9LFP6 35768502
    16 7qpa:B (3.18) BS02 DLP ? GO:0005783 ... Q9LFP6 35768502
    17 7qpc:A (3.44) BS02 DLP ? GO:0005783 ... Q9LFP6 35768502
    18 7qpc:B (3.44) BS02 DLP ? GO:0005783 ... Q9LFP6 35768502
    19 8xej:X (3.66) BS01 DLP ? GO:0002513 ... Q9H6D3 38364890
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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