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BioLiP

PDB CCD ID: RP3
Number of entries in BioLiP: 2
Chemical formula: C5 H11 O7 P
InChI: InChI=1S/C5H11O7P/c6-4-1-3(12-5(4)7)2-11-13(8,9)10/h3-7H,1-2H2,(H2,8,9,10)/t3-,4+,5+/m0/s1
InChIKey: OOLHLHJSMUTTHE-VPENINKCSA-N
SMILES:
SoftwareSMILES
CACTVS 3.385O[C@@H]1C[C@@H](CO[P](O)(O)=O)O[C@H]1O
OpenEye OEToolkits 1.9.2C1[C@H](O[C@H]([C@@H]1O)O)COP(=O)(O)O
ACDLabs 12.01OP(O)(=O)OCC1OC(C(C1)O)O
CACTVS 3.385O[CH]1C[CH](CO[P](O)(O)=O)O[CH]1O
OpenEye OEToolkits 1.9.2C1C(OC(C1O)O)COP(=O)(O)O
Name:3-deoxy-5-O-phosphono-beta-D-ribofuranose;
3'-deoxy-D-ribofuranose-5'-phosphate;
3-deoxy-5-O-phosphono-beta-D-ribose;
3-deoxy-5-O-phosphono-D-ribose;
3-deoxy-5-O-phosphono-ribose
ZINC: ZINC000033801661
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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