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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP

PDB CCD ID: 1Y9
Number of entries in BioLiP: 4
Chemical formula: C12 H18 O3
InChI: InChI=1S/C12H18O3/c1-9(2)3-4-12(8-14)6-10(7-13)5-11(12)15/h3,6,8,11,13,15H,4-5,7H2,1-2H3/t11-,12-/m0/s1
InChIKey: WFKBKCXWCUVGHP-RYUDHWBXSA-N
SMILES:
SoftwareSMILES
ACDLabs 12.01O=CC1(C=C(CC1O)CO)C\C=C(/C)C
CACTVS 3.385CC(C)=CC[C]1(C=O)C=C(CO)C[CH]1O
OpenEye OEToolkits 1.7.6CC(=CC[C@]1(C=C(C[C@@H]1O)CO)C=O)C
OpenEye OEToolkits 1.7.6CC(=CCC1(C=C(CC1O)CO)C=O)C
CACTVS 3.385CC(C)=CC[C@@]1(C=O)C=C(CO)C[C@@H]1O
Name:vibralactone, bound form;
(1R,5S)-5-hydroxy-3-(hydroxymethyl)-1-(3-methylbut-2-en-1-yl)cyclopent-2-ene-1-carbaldehyde
ZINC: ZINC000095920993

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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