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BioLiP
>rna
uuaaugucacgguacccaauuuucugccccggacuccacggc

The query sequence (length=42) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8d97:C 42 42 1.0000 1.0000 1.0000 1.49e-16
2 7y82:B 41 38 0.9048 0.9268 1.0000 2.50e-14
3 7y8t:D 37 33 0.7857 0.8919 1.0000 1.50e-11 7y8y:D
4 8d9e:C 36 33 0.7857 0.9167 1.0000 1.50e-11 8d9g:C, 8d9h:C, 7y81:B, 7y83:B, 7y85:B
5 8d8n:C 35 33 0.7857 0.9429 1.0000 1.50e-11 8d9i:C
6 7xso:D 35 32 0.7619 0.9143 1.0000 5.40e-11 7xsp:D, 7y80:B, 7y84:B
7 7x7r:C 36 32 0.7619 0.8889 1.0000 5.40e-11
8 7xsq:D 34 31 0.7381 0.9118 1.0000 1.94e-10 7xsr:D, 7xss:D, 7xt4:r
9 7xc7:C 31 30 0.7143 0.9677 1.0000 6.99e-10
10 8gna:C 32 30 0.7143 0.9375 1.0000 6.99e-10
11 8d9f:C 33 30 0.7143 0.9091 1.0000 6.99e-10 8gu6:C, 7x7a:C, 7x8a:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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