BioLiP

>rna
ugaacgcacauugcgccccuugguauuccagggggcaugccuguuugagcgucauuu

The query sequence (length=57) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	4v7h:B4	157	57	1.0000	0.3631	1.0000	1.11e-24
2	4v6i:DB	157	57	1.0000	0.3631	1.0000	1.11e-24
3	7r6q:2	57	57	1.0000	1.0000	1.0000	1.11e-24
4	5obm:4	156	57	1.0000	0.3654	1.0000	1.11e-24
5	8aaf:i	158	57	1.0000	0.3608	1.0000	1.11e-24	8agt:i, 8agu:i, 8agv:i, 8agw:i, 8agx:i, 8agz:i, 5apn:8, 5apo:8, 7azy:G, 7b7d:LC, 8bip:C3, 8bjq:C3, 8bn3:4, 8bqd:BS, 8bqx:BS, 7bt6:2, 7btb:2, 6c0f:2, 6cb1:2, 8ccs:CC, 8cdl:CC, 8cdr:CC, 8ceh:CC, 8cf5:CC, 8cg8:CC, 8cgn:CC, 8civ:CC, 8cku:CC, 8cmj:CC, 5dat:4, 5dat:8, 5dc3:4, 5dc3:8, 5dge:4, 5dge:8, 5dgf:4, 5dgf:8, 5dgv:4, 5dgv:8, 6elz:2, 6em1:2, 6em4:2, 6em5:2, 8eub:A4, 8evp:A4, 8evq:A4, 8evr:A4, 8evs:A4, 8evt:A4, 8ewb:A4, 8ewc:A4, 5fci:4, 5fci:8, 5fcj:4, 5fcj:8, 5gak:4, 6gq1:4, 6gqb:4, 6gqv:4, 5h4p:4, 6hd7:4, 6hhq:4, 6hhq:AT, 5i4l:4, 5i4l:8, 3j6x:8S, 3j6y:8S, 3j77:8S, 3j78:8S, 3jct:2, 5jcs:y, 5juo:C, 5jup:C, 5jus:C, 5jut:C, 5juu:C, 8k82:C3, 5lyb:4, 5lyb:8, 5m1j:44, 6m62:2, 5mc6:BS, 5mei:4, 5mei:AT, 7mpi:A4, 7mpj:A4, 6n8j:3, 6n8m:C, 6n8n:C, 6n8o:C, 7n8b:A4, 7nac:2, 5ndg:4, 5ndv:8, 5ndw:4, 5ndw:8, 7nrc:LC, 7nrd:LC, 5obm:8, 7of1:2, 7ohq:2, 7ohr:2, 6oig:8, 5on6:4, 5on6:AT, 7osa:58S, 7osm:58S, 8p8m:LD, 8p8u:LD, 8pfr:LD, 6q8y:BS, 7r7a:2, 6r84:4, 6r86:4, 6r87:4, 7rr5:C3, 6s47:AC, 6snt:3, 6t4q:C3, 5t62:C, 5t6r:C, 6t7i:C3, 6t7t:C3, 6t83:3b, 5tbw:4, 5tbw:AT, 6tb3:BS, 5tga:4, 5tga:8, 5tgm:4, 5tgm:8, 6tnu:BS, 7too:A58S, 7top:A58S, 7u0h:2, 4u3m:4, 4u3m:8, 4u3n:4, 4u3n:8, 4u3u:4, 4u3u:8, 4u4n:4, 4u4n:8, 4u4o:4, 4u4o:8, 4u4q:4, 4u4q:8, 4u4r:4, 4u4r:8, 4u4u:4, 4u4u:8, 4u4y:4, 4u4y:8, 4u4z:4, 4u4z:8, 4u50:4, 4u50:8, 4u51:4, 4u51:8, 4u52:4, 4u52:8, 4u53:4, 4u53:8, 4u55:4, 4u55:8, 4u56:4, 4u56:8, 4u6f:4, 4u6f:8, 7ug6:2, 7uoo:2, 7uqb:2, 7uqz:2, 7v08:2, 4v7r:B3, 4v7r:D3, 4v88:A4, 4v88:A8, 4v8t:8, 4v8y:B8, 4v8z:B8, 4v91:4, 6xiq:4, 6xir:4, 8y0u:C3, 6ylx:2, 6yly:3, 7zpq:3, 7zrs:3, 7zs5:4, 7zuw:3, 7zux:3, 7zw0:LD
6	6ylg:2	154	56	0.9825	0.3636	1.0000	4.00e-24	6ylh:2
7	6em3:2	157	56	0.9825	0.3567	1.0000	4.00e-24	6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8k:3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:BS, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3
8	8hfr:3n	156	55	0.9649	0.3526	1.0000	1.44e-23	6qik:y, 6qt0:y, 6qtz:y, 6ri5:y, 6rzz:y, 6s05:y, 5z3g:B
9	6ft6:2	162	55	0.9649	0.3395	1.0000	1.44e-23
10	5it7:8	157	56	0.9474	0.3439	0.9643	8.66e-21	6uz7:8
11	7oh3:2	155	56	0.9474	0.3484	0.9643	3.11e-20
12	8e5t:2	138	48	0.8421	0.3478	1.0000	1.12e-19
13	7ohv:2	155	57	0.9474	0.3484	0.9474	1.45e-18	8v87:2
14	7nad:2	59	37	0.6491	0.6271	1.0000	1.46e-13	7r72:2
15	7ohy:2	148	30	0.5263	0.2027	1.0000	1.14e-09
16	7ohp:2	149	30	0.5263	0.2013	1.0000	1.14e-09
17	8v83:2	150	57	0.8596	0.3267	0.8596	4.09e-09	8v84:2
18	7ohw:2	149	32	0.5439	0.2081	0.9688	4.09e-09
19	7ohs:2	147	32	0.5439	0.2109	0.9688	4.09e-09
20	7ohu:2	148	28	0.4912	0.1892	1.0000	1.47e-08

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