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BioLiP
>rna
uacgucccucuccaaacgagagaacaugcaugggcuggcaugagcggccuugaggccugaaauuucaugcuagggacaca

The query sequence (length=80) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3jcs:5 80 80 1.0000 1.0000 1.0000 2.84e-37
2 8rxx:L5 122 48 0.6000 0.3934 1.0000 1.75e-19
3 8rxh:L5 120 48 0.6000 0.4000 1.0000 1.75e-19
4 8ovj:5 115 48 0.6000 0.4174 1.0000 1.75e-19
5 8a98:5 111 48 0.6000 0.4324 1.0000 1.75e-19
6 6az3:5 97 47 0.5875 0.4845 1.0000 6.29e-19
7 8a3w:5 98 47 0.5875 0.4796 1.0000 6.29e-19
8 5t5h:H 91 45 0.5625 0.4945 1.0000 8.13e-18
9 5t2a:H 93 45 0.5625 0.4839 1.0000 8.13e-18

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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