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BioLiP
>rna
guucgcgaacuucguggacauuuggucaauuugaaacaauacagagaucagcaguuccccugcauaaggaugaaccguuc
aaagagauuuguuuu

The query sequence (length=95) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5nrl:6 95 95 1.0000 1.0000 1.0000 1.63e-45
2 5zwm:F 99 87 0.8947 0.8586 0.9770 3.54e-37 5zwo:F
3 5mps:6 99 97 0.9474 0.9091 0.9278 9.92e-33 5mq0:6
4 5lj3:V 97 97 0.9474 0.9278 0.9278 9.92e-33 5lj5:V
5 7dco:F 103 87 0.8526 0.7864 0.9310 2.15e-29 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6n:E, 6j6q:E, 5wsg:E, 5ylz:D
6 7b9v:6 102 87 0.8526 0.7941 0.9310 2.15e-29 6bk8:6, 6exn:6, 5lqw:6
7 5y88:D 101 86 0.8421 0.7921 0.9302 7.72e-29
8 5gan:W 80 79 0.7895 0.9375 0.9494 7.72e-29
9 5tf6:B 71 70 0.6737 0.9014 0.9143 6.06e-20
10 5gap:W 56 60 0.5895 1.0000 0.9333 2.82e-18
11 3jcm:D 45 41 0.4316 0.9111 1.0000 1.70e-15

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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