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BioLiP
>rna
guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcg

The query sequence (length=46) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8z9c:M 48 46 1.0000 0.9583 1.0000 1.04e-18
2 8z99:M 54 46 1.0000 0.8519 1.0000 1.04e-18
3 8z4l:M 49 46 1.0000 0.9388 1.0000 1.04e-18
4 8yhe:M 46 46 1.0000 1.0000 1.0000 1.04e-18
5 8yhd:M 53 46 1.0000 0.8679 1.0000 1.04e-18
6 8z9e:M 39 39 0.8478 1.0000 1.0000 8.10e-15
7 8z4j:M 38 38 0.8261 1.0000 1.0000 2.91e-14
8 8z99:N 46 37 0.8043 0.8043 1.0000 1.05e-13
9 8z9c:N 41 35 0.7609 0.8537 1.0000 1.36e-12
10 8z4l:N 40 34 0.7391 0.8500 1.0000 4.87e-12
11 8yhd:N 35 34 0.7391 0.9714 1.0000 4.87e-12
12 8z4j:N 34 28 0.6087 0.8235 1.0000 1.05e-08 8z9e:N
13 8yhe:N 30 28 0.6087 0.9333 1.0000 1.05e-08

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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