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BioLiP
>rna
gggcuuguagcucaggugguuagagcgcaccccugauaagggugaggucggugguucaaguccacucaggcccac

The query sequence (length=75) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ffy:T 75 75 1.0000 1.0000 1.0000 1.57e-34 1qu2:T, 1qu3:T
2 8zyc:C 73 71 0.9467 0.9726 1.0000 2.63e-32 8zyd:C
3 5o2r:x 77 71 0.9467 0.9221 1.0000 2.63e-32
4 7b5k:x 77 71 0.9333 0.9091 0.9859 1.22e-30
5 8vu0:C 76 73 0.9200 0.9079 0.9452 1.23e-25 8vu0:D
6 5kcs:1x 73 71 0.8933 0.9178 0.9437 1.59e-24

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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