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BioLiP
>rna
ggccuccgaacgguaagagccuagcauguagaacugguuaccuaugaugucauacuuauccugucccuuuuuuuucc

The query sequence (length=77) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5z56:G 77 77 1.0000 1.0000 1.0000 1.26e-35 5z57:G, 5z58:G
2 8i0u:G 79 77 1.0000 0.9747 1.0000 1.26e-35 8i0v:G
3 8ch6:g 76 77 0.9481 0.9605 0.9481 7.63e-28 7qtt:g
4 6ahd:G 77 78 0.9481 0.9481 0.9359 2.74e-27
5 8i0s:G 72 77 0.9091 0.9722 0.9091 9.94e-22 8i0t:G
6 8i0r:G 71 77 0.9091 0.9859 0.9091 9.94e-22
7 5yzg:G 88 43 0.5584 0.4886 1.0000 1.00e-16
8 5xjc:G 84 43 0.5584 0.5119 1.0000 1.00e-16
9 6icz:G 84 43 0.5584 0.5119 1.0000 1.00e-16
10 8i0p:G 63 74 0.8182 1.0000 0.8514 2.80e-12
11 7w59:G 82 31 0.4026 0.3780 1.0000 4.69e-10 7w5a:G, 7w5b:G
12 8qo9:Z 46 31 0.4026 0.6739 1.0000 4.69e-10
13 8q7n:Z 31 31 0.4026 1.0000 1.0000 4.69e-10
14 8i0w:6 70 31 0.4026 0.4429 1.0000 4.69e-10 6id0:G
15 6id1:G 68 30 0.3896 0.4412 1.0000 1.69e-09
16 7abi:Z 57 30 0.3896 0.5263 1.0000 1.69e-09
17 7abg:Z 47 30 0.3896 0.6383 1.0000 1.69e-09
18 7aav:Z 29 29 0.3766 1.0000 1.0000 6.06e-09 7abf:Z

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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