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BioLiP
>rna
ggauugaaacgccaugcucaggcuggcgagugcgcgccacucaucaag

The query sequence (length=48) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8dex:L 48 48 1.0000 1.0000 1.0000 8.61e-20 8dfs:L
2 8dfo:L 45 45 0.9375 1.0000 1.0000 4.01e-18
3 7kha:J 45 46 0.9167 0.9778 0.9565 8.68e-15
4 8dfa:L 46 42 0.8542 0.8913 0.9762 8.68e-15
5 8dej:L 47 42 0.8542 0.8723 0.9762 8.68e-15

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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