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BioLiP
>rna
ggaaacggccuccgaacgguaagagccuagcauguagaacugguuaccuccaggguuuccuugaugaugucauacuuauc
cugu

The query sequence (length=84) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5yzg:G 88 84 1.0000 0.9545 1.0000 1.81e-39
2 5xjc:G 84 84 1.0000 1.0000 1.0000 1.81e-39
3 6icz:G 84 78 0.9286 0.9286 1.0000 3.92e-36
4 7w59:G 82 66 0.7857 0.8049 1.0000 1.84e-29 7w5a:G, 7w5b:G
5 8i0w:6 70 66 0.7857 0.9429 1.0000 1.84e-29 6id0:G
6 6id1:G 68 66 0.7500 0.9265 0.9545 2.39e-23
7 8i0u:G 79 44 0.5238 0.5570 1.0000 3.12e-17 8i0v:G
8 5z56:G 77 43 0.5119 0.5584 1.0000 1.12e-16 5z57:G, 5z58:G
9 8ch6:g 76 41 0.4881 0.5395 1.0000 1.45e-15 7qtt:g
10 8i0s:G 72 37 0.4405 0.5139 1.0000 2.43e-13 8i0t:G
11 8i0r:G 71 37 0.4405 0.5211 1.0000 2.43e-13
12 6ahd:G 77 35 0.4167 0.4545 1.0000 3.14e-12
13 6ahd:G 77 29 0.3452 0.3766 1.0000 6.80e-09
14 8qo9:Z 46 31 0.3690 0.6739 1.0000 5.25e-10
15 8q7n:Z 31 31 0.3690 1.0000 1.0000 5.25e-10
16 8i0p:G 63 30 0.3571 0.4762 1.0000 1.89e-09
17 7abi:Z 57 30 0.3571 0.5263 1.0000 1.89e-09
18 7abg:Z 47 30 0.3571 0.6383 1.0000 1.89e-09
19 6ah0:G 42 29 0.3452 0.6905 1.0000 6.80e-09
20 7aav:Z 29 29 0.3452 1.0000 1.0000 6.80e-09 7abf:Z

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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