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BioLiP
>rna
gccgggcgcgguggcgcgcgccuguagucccagcuacucgggaggcugaggcuggaggaucgcuuuagcgagaccccguc
ucgacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggccc
aggucggaaacggagcaggucaaaacucccgugcugaucaguaguu

The query sequence (length=206) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3jaj:4 206 206 1.0000 1.0000 1.0000 7.84e-107 3jan:4
2 7nfx:1 249 211 0.9612 0.7952 0.9384 1.04e-85 7obr:1
3 6frk:1 258 215 0.9660 0.7713 0.9256 2.26e-82
4 6r6g:AF 206 206 0.9175 0.9175 0.9175 1.77e-73
5 4p3e:A 124 124 0.6019 1.0000 1.0000 3.01e-61
6 4ue5:A 299 129 0.6165 0.4247 0.9845 3.89e-60
7 4ue5:A 299 69 0.3252 0.2241 0.9710 2.44e-27
8 7qwq:1 167 129 0.6165 0.7605 0.9845 3.89e-60
9 7obq:1 165 129 0.6165 0.7697 0.9845 3.89e-60
10 5m73:A 145 129 0.6165 0.8759 0.9845 3.89e-60 5m73:E
11 2j37:A 128 122 0.5922 0.9531 1.0000 3.89e-60 1mfq:A, 1ry1:A
12 2go5:A 127 122 0.5922 0.9606 1.0000 3.89e-60
13 1l9a:B 126 122 0.5825 0.9524 0.9836 3.03e-56
14 3ktv:A 108 105 0.5097 0.9722 1.0000 1.10e-50 3ktv:C
15 1ry1:E 49 47 0.2282 0.9592 1.0000 1.91e-18
16 1e8o:E 50 47 0.2282 0.9400 1.0000 1.91e-18

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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