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BioLiP
>rna
gccgaggugguggaauugguagacacgcuaccuugaggugguaguuuacggguucaagucccguccucgguacca

The query sequence (length=75) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ha8:x 75 75 1.0000 1.0000 1.0000 1.57e-34
2 4wsm:3K 77 77 1.0000 0.9740 0.9740 9.46e-32
3 4wsm:2K 79 79 1.0000 0.9494 0.9494 5.69e-29
4 4wsm:2L 80 80 1.0000 0.9375 0.9375 2.65e-27
5 2nr0:F 72 72 0.8933 0.9306 0.9306 7.42e-23
6 2nr0:G 67 67 0.8400 0.9403 0.9403 2.67e-22
7 6d90:3 87 45 0.6000 0.5172 1.0000 7.47e-18 6d9j:3, 6ha1:x, 6htq:v, 5kcr:1x, 7nso:8, 7nsp:8, 7nsq:8, 4v87:BB, 4v87:CB, 4v8b:AB, 4v8c:CB, 4v8c:DB, 4wsm:1K, 4wsm:1L
8 2nr0:H 65 65 0.7733 0.8923 0.8923 2.69e-17
9 2nr0:E 81 44 0.5867 0.5432 1.0000 2.69e-17
10 2nre:F 56 64 0.7467 1.0000 0.8750 7.52e-13

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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