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BioLiP
>rna
gcccggaugguggaaucgguagacacaagggaucccucggcguucgcgcugugcggguucaagucccgcuccggguacca

The query sequence (length=80) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ari:B 80 80 1.0000 1.0000 1.0000 2.84e-37 3zju:B
2 3zjt:B 83 82 1.0000 0.9639 0.9756 1.71e-34
3 3zgz:B 82 81 0.9875 0.9634 0.9753 6.16e-34
4 5onh:E 83 83 1.0000 0.9639 0.9639 7.96e-33
5 4as1:B 83 83 1.0000 0.9639 0.9639 7.96e-33
6 4aq7:B 79 81 0.9750 0.9873 0.9630 1.03e-31 4cqn:E, 5on3:B, 5on3:E
7 4arc:B 71 68 0.8500 0.9577 1.0000 1.33e-30
8 3zjv:B 85 85 1.0000 0.9412 0.9412 4.79e-30
9 3zgz:E 80 81 0.9625 0.9625 0.9506 4.79e-30
10 8pot:B 84 84 0.9875 0.9405 0.9405 1.72e-29
11 5on2:E 81 83 0.9750 0.9630 0.9398 6.20e-29
12 4cqn:B 82 84 0.9750 0.9512 0.9286 8.02e-28 5onh:B
13 4aq7:E 77 81 0.9500 0.9870 0.9383 8.02e-28 5omw:E
14 5omw:B 83 85 0.9750 0.9398 0.9176 3.73e-26
15 5on2:B 85 87 0.9750 0.9176 0.8966 2.25e-23
16 2nqp:F 71 75 0.8500 0.9577 0.9067 1.35e-20

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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